Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc91.6 Carica papaya HOM05D004036 ORTHO05D004576 1.3e-91 339.7 172 100.0
Duzib187G1985 Durio zibethinus HOM05D004036 ORTHO05D004576 4.3e-39 165.2 148 64.9
Gohir.D06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 5.3e-37 158.3 172 52.3
Duzib150G0431 Durio zibethinus HOM05D004036 ORTHO05D004576 1.2e-36 157.1 172 54.1
COL.COLO4_24066 Corchorus olitorius HOM05D004036 ORTHO05D004576 7.6e-36 154.5 172 52.9
Thecc.09G144100 Theobroma cacao HOM05D004036 ORTHO05D004576 1.0e-35 154.1 172 53.5
Gohir.A06G047900 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.8e-35 152.1 165 52.1
Gohir.D12G195700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.5e-33 145.6 172 50.0
Gorai.004G151900 Gossypium raimondii HOM05D004036 ORTHO05D004576 1.0e-32 144.1 172 51.2
Gohir.A12G126300 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-32 142.1 172 49.4
Gohir.D09G022200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.9e-32 142.1 172 48.8
Gohir.A11G185400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 6.7e-32 141.4 172 48.8
Gorai.009G011700 Gossypium raimondii HOM05D004036 ORTHO05D004576 6.7e-32 141.4 172 48.8
Gohir.A12G241700 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.5e-31 140.2 172 49.4
Gorai.008G052900 Gossypium raimondii HOM05D004036 ORTHO05D004576 2.5e-31 139.4 115 62.6
Gohir.D05G335100 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-31 139.0 172 48.8
Gohir.D09G023175 Gossypium hirsutum HOM05D004036 ORTHO05D004576 3.3e-31 139.0 172 48.3
Atru.chr7.2325 Acer truncatum HOM05D004036 ORTHO05D004576 1.3e-30 137.1 172 50.0
Gohir.A05G010600 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-30 136.3 171 48.0
Gohir.D01G158400 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-30 136.3 108 64.8
CiPaw.08G015700 Carya illinoinensis HOM05D004036 ORTHO05D004576 6.3e-30 134.8 151 52.3
Dinv35883 Davidia involucrata HOM05D004036 ORTHO05D004576 6.3e-30 134.8 148 52.0
Cfa013210 Carpinus fangiana HOM05D004036 ORTHO05D004576 6.9e-29 131.3 143 56.6
RcHm_v2.0_Chr6g0312751 Rosa chinensis HOM05D004036 ORTHO05D004576 9.0e-29 131.0 156 50.0
Prupe.1G466700 Prunus persica HOM05D004036 ORTHO05D004576 2.2e-27 126.3 159 46.5
Manes.16G068200 Manihot esculenta HOM05D004036 ORTHO05D004576 3.8e-27 125.6 160 45.0
FAN27G0504 Fragaria x ananassa HOM05D004036 ORTHO05D004576 8.5e-27 124.4 147 50.3
Manes.03G064800 Manihot esculenta HOM05D004036 ORTHO05D004576 1.1e-26 124.0 117 55.6
FAN20G2367 Fragaria x ananassa HOM05D004036 ORTHO05D004576 1.4e-26 123.6 147 49.7
FvH4_2g30160 Fragaria vesca HOM05D004036 ORTHO05D004576 2.5e-26 122.9 147 49.7
FAN24G0425 Fragaria x ananassa HOM05D004036 ORTHO05D004576 2.5e-26 122.9 147 49.7
TAR626G0352 Trochodendron aralioides HOM05D004036 ORTHO05D004576 4.2e-26 122.1 168 41.7
Ciclev10009480m.g Citrus clementina HOM05D004036 ORTHO05D004576 7.2e-26 121.3 152 49.3
QL12p031289 Quercus lobata HOM05D004036 ORTHO05D004576 7.2e-26 121.3 146 50.7
TWI63G0992 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 2.7e-25 119.4 131 52.7
FAN15G1681 Fragaria x ananassa HOM05D004036 ORTHO05D004576 3.0e-24 115.9 147 48.3
Haze_21623 Corylus avellana HOM05D004036 ORTHO05D004576 3.9e-24 115.5 183 44.3
Nitab4.5_0006579g0060 Nicotiana tabacum HOM05D004036 ORTHO05D004576 6.7e-24 114.8 174 43.7
Nitab4.5_0000125g0270 Nicotiana tabacum HOM05D004036 ORTHO05D004576 2.5e-23 112.8 174 43.1
Sabra18G0035300 Salix brachista HOM05D004036 ORTHO05D004576 3.3e-23 112.5 132 49.2
Peaxi162Scf00105g01426 Petunia axillaris HOM05D004036 ORTHO05D004576 4.3e-23 112.1 174 42.0
Oeu045176.1 Olea europaea HOM05D004036 ORTHO05D004576 5.7e-23 111.7 110 56.4
Gohir.D05G011350 Gossypium hirsutum HOM05D004036 ORTHO05D004576 2.2e-22 109.8 126 47.6
CANSAT56G2568 Cannabis sativa HOM05D004036 ORTHO05D004576 2.8e-22 109.4 104 56.7
Hma1.2p1_0175F.1_g077210 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 2.8e-22 109.4 131 47.3
Sp2g22000 Schrenkiella parvula HOM05D004036 ORTHO05D004576 2.8e-22 109.4 146 44.5
TAR624G0048 Trochodendron aralioides HOM05D004036 ORTHO05D004576 2.8e-22 109.4 149 44.3
PGR031G0366 Punica granatum HOM05D004036 ORTHO05D004576 6.3e-22 108.2 105 59.0
TWI34G1922 Tripterygium wilfordii HOM05D004036 ORTHO05D004576 1.1e-21 107.5 117 52.1
Phvul.001G055700 Phaseolus vulgaris HOM05D004036 ORTHO05D004576 4.1e-21 105.5 143 42.0
Cc08_g08300 Coffea canephora HOM05D004036 ORTHO05D004576 5.3e-21 105.1 139 46.8
Eucgr.C01818 Eucalyptus grandis HOM05D004036 ORTHO05D004576 5.3e-21 105.1 149 42.3
Gorai.010G053700 Gossypium raimondii HOM05D004036 ORTHO05D004576 5.3e-21 105.1 121 45.5
CAN.G21.9 Capsicum annuum HOM05D004036 ORTHO05D004576 6.9e-21 104.8 137 46.7
DCAR_003061 Daucus carota HOM05D004036 ORTHO05D004576 6.9e-21 104.8 123 53.7
Thhalv10004997m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 6.9e-21 104.8 172 38.4
VMungo0647G1622 Vigna mungo HOM05D004036 ORTHO05D004576 1.5e-20 103.6 143 42.0
C07p42280 Brassica napus HOM05D004036 ORTHO05D004576 3.4e-20 102.4 100 56.0
BolC7t44757H Brassica oleracea HOM05D004036 ORTHO05D004576 3.4e-20 102.4 100 56.0
CARHR201790 Cardamine hirsuta HOM05D004036 ORTHO05D004576 4.5e-20 102.1 127 47.2
Potri.006G246600 Populus trichocarpa HOM05D004036 ORTHO05D004576 7.7e-20 101.3 132 47.7
C09p65420 Brassica napus HOM05D004036 ORTHO05D004576 1.0e-19 100.9 131 47.3
BolC9t59367H Brassica oleracea HOM05D004036 ORTHO05D004576 1.0e-19 100.9 131 47.3
MD08G1136600 Malus domestica HOM05D004036 ORTHO05D004576 1.0e-19 100.9 80 67.5
A06p36250 Brassica napus HOM05D004036 ORTHO05D004576 1.3e-19 100.5 100 56.0
BraA06t26547Z Brassica rapa HOM05D004036 ORTHO05D004576 1.3e-19 100.5 100 56.0
THA.LOC104799217 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 1.3e-19 100.5 130 48.5
BcaC04g19226 Brassica carinata HOM05D004036 ORTHO05D004576 1.7e-19 100.1 131 48.1
Glyma.14G129200 Glycine max HOM05D004036 ORTHO05D004576 2.2e-19 99.8 109 48.6
Glyma.17G203900 Glycine max HOM05D004036 ORTHO05D004576 2.2e-19 99.8 130 47.7
CSS0014753 Camellia sinensis var. sinensis HOM05D004036 ORTHO05D004576 2.9e-19 99.4 117 45.3
THA.LOC104815044 Tarenaya hassleriana HOM05D004036 ORTHO05D004576 2.9e-19 99.4 115 53.9
AL6G22100 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 5.0e-19 98.6 126 47.6
Solyc08g067810.3 Solanum lycopersicum HOM05D004036 ORTHO05D004576 5.0e-19 98.6 179 38.0
Thhalv10014836m.g Eutrema salsugineum HOM05D004036 ORTHO05D004576 6.5e-19 98.2 106 49.1
Carub.0006s2340 Capsella rubella HOM05D004036 ORTHO05D004576 8.5e-19 97.8 105 55.2
Sp6g32160 Schrenkiella parvula HOM05D004036 ORTHO05D004576 8.5e-19 97.8 129 45.0
Sopen08g021750 Solanum pennellii HOM05D004036 ORTHO05D004576 8.5e-19 97.8 179 38.0
PGSC0003DMG400033628 Solanum tuberosum HOM05D004036 ORTHO05D004576 1.1e-18 97.4 174 39.1
AL6G37340 Arabidopsis lyrata HOM05D004036 ORTHO05D004576 1.9e-18 96.7 125 49.6
AT5G11440 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.9e-18 96.7 116 50.0
Aa31LG3G15750 Aethionema arabicum HOM05D004036 ORTHO05D004576 4.2e-18 95.5 139 43.9
Migut.E01501 Erythranthe guttata HOM05D004036 ORTHO05D004576 4.2e-18 95.5 117 50.4
Hma1.2p1_0003F.1_g003650 Hydrangea macrophylla HOM05D004036 ORTHO05D004576 7.2e-18 94.7 162 37.7
DCAR_007682 Daucus carota HOM05D004036 ORTHO05D004576 1.2e-17 94.0 147 41.5
MSTRG.1647 Avicennia marina HOM05D004036 ORTHO05D004576 1.6e-17 93.6 104 51.0
Carub.0006s0989 Capsella rubella HOM05D004036 ORTHO05D004576 2.1e-17 93.2 139 44.6
CARHR187840 Cardamine hirsuta HOM05D004036 ORTHO05D004576 2.1e-17 93.2 134 44.0
BcaB08g37059 Brassica carinata HOM05D004036 ORTHO05D004576 2.7e-17 92.8 126 44.4
A02p01010 Brassica napus HOM05D004036 ORTHO05D004576 2.7e-17 92.8 107 48.6
BraA02t05082Z Brassica rapa HOM05D004036 ORTHO05D004576 2.7e-17 92.8 107 48.6
Lsat_1_v5_gn_3_108141 Lactuca sativa HOM05D004036 ORTHO05D004576 2.7e-17 92.8 78 55.1
BcaC03g13367 Brassica carinata HOM05D004036 ORTHO05D004576 3.6e-17 92.4 94 51.1
arahy.Tifrunner.gnm1.ann1.7NC9IZ Arachis hypogaea HOM05D004036 ORTHO05D004576 4.7e-17 92.0 108 50.0
arahy.Tifrunner.gnm1.ann1.AAJ54F Arachis hypogaea HOM05D004036 ORTHO05D004576 4.7e-17 92.0 108 50.0
BcaB01g06306 Brassica carinata HOM05D004036 ORTHO05D004576 6.1e-17 91.7 115 47.8
Aa31LG11G4630 Aethionema arabicum HOM05D004036 ORTHO05D004576 7.9e-17 91.3 97 51.5
A03p05000 Brassica napus HOM05D004036 ORTHO05D004576 7.9e-17 91.3 116 47.4
vmacro05446 Vaccinium macrocarpon HOM05D004036 ORTHO05D004576 7.9e-17 91.3 184 35.9
Actinidia14638 Actinidia chinensis HOM05D004036 ORTHO05D004576 1.0e-16 90.9 152 40.1
AT5G25540 Arabidopsis thaliana HOM05D004036 ORTHO05D004576 1.0e-16 90.9 123 48.0
Lj5g0012132 Lotus japonicus HOM05D004036 ORTHO05D004576 1.0e-16 90.9 120 45.8
A10p26310 Brassica napus HOM05D004036 ORTHO05D004576 1.8e-16 90.1 132 46.2
CsaV3_3G046690 Cucumis sativus L. HOM05D004036 ORTHO05D004576 1.8e-16 90.1 126 42.9
CiPaw.03G235800 Carya illinoinensis HOM05D004036 ORTHO05D004576 2.3e-16 89.7 164 36.0
ECA240G1837 Erigeron canadensis HOM05D004036 ORTHO05D004576 2.3e-16 89.7 90 48.9
Sabra06G0192900 Salix brachista HOM05D004036 ORTHO05D004576 2.3e-16 89.7 140 43.6
MSTRG.14001 Avicennia marina HOM05D004036 ORTHO05D004576 3.9e-16 89.0 116 46.6
C02p05040 Brassica napus HOM05D004036 ORTHO05D004576 5.1e-16 88.6 103 49.5
HanXRQChr13g0409481 Helianthus annuus HOM05D004036 ORTHO05D004576 6.7e-16 88.2 119 43.7
BolC2t12008H Brassica oleracea HOM05D004036 ORTHO05D004576 8.8e-16 87.8 108 46.3
A02p39670 Brassica napus HOM05D004036 ORTHO05D004576 1.1e-15 87.4 106 50.0
BraA02t08932Z Brassica rapa HOM05D004036 ORTHO05D004576 1.1e-15 87.4 106 50.0
Gohir.A07G032200 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-15 87.4 117 42.7
Gohir.A08G237500 Gossypium hirsutum HOM05D004036 ORTHO05D004576 1.1e-15 87.4 117 42.7
Aqoxy7G01846 Aquilegia oxysepala HOM05D004036 ORTHO05D004576 1.5e-15 87.0 96 52.1
ClCG05G017210 Citrullus lanatus HOM05D004036 ORTHO05D004576 2.6e-15 86.3 109 44.0
QL02p086217 Quercus lobata HOM05D004036 ORTHO05D004576 3.3e-15 85.9 148 35.1
C02p59450 Brassica napus HOM05D004036 ORTHO05D004576 5.7e-15 85.1 95 51.6
BraA10t44688Z Brassica rapa HOM05D004036 ORTHO05D004576 7.4e-15 84.7 127 44.9
Psat6g031000 Pisum sativum HOM05D004036 ORTHO05D004576 9.7e-15 84.3 101 46.5
Lalb_Chr08g0243781 Lupinus albus HOM05D004036 ORTHO05D004576 1.3e-14 84.0 134 44.0
SGA_v2.0_scaffold163G38098 Striga asiatica HOM05D004036 ORTHO05D004576 1.7e-14 83.6 103 47.6
BcaNung01927 Brassica carinata HOM05D004036 ORTHO05D004576 2.2e-14 83.2 95 47.4
BcaNung07259 Brassica carinata HOM05D000175 ORTHO05D000481 2.2e-14 83.2 80 57.5
Sed0023915 Sechium edule HOM05D004036 ORTHO05D004576 2.2e-14 83.2 107 45.8
TPR.G20095 Trifolium pratense HOM05D004036 ORTHO05D004576 2.8e-14 82.8 103 46.6
C09p06800 Brassica napus HOM05D004036 ORTHO05D004576 3.7e-14 82.4 100 44.0
BolC9t53601H Brassica oleracea HOM05D004036 ORTHO05D004576 3.7e-14 82.4 100 44.0
Oeu031563.3 Olea europaea HOM05D004036 ORTHO05D004576 4.8e-14 82.0 134 41.8
C03p05740 Brassica napus HOM05D004036 ORTHO05D004576 6.3e-14 81.6 116 45.7
BolC3t13087H Brassica oleracea HOM05D004036 ORTHO05D004576 6.3e-14 81.6 116 45.7
Lalb_Chr23g0269031 Lupinus albus HOM05D004036 ORTHO05D004576 6.3e-14 81.6 141 40.4
Gohir.D04G088301 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.2e-14 81.3 58 60.3
Gohir.D12G143101 Gossypium hirsutum HOM05D004036 ORTHO05D004576 8.2e-14 81.3 58 60.3
Medtr1g011280 Medicago truncatula HOM05D004036 ORTHO05D004576 8.2e-14 81.3 127 40.9
Nn2g11835 Nelumbo nucifera HOM05D004036 ORTHO05D004576 8.2e-14 81.3 103 43.7
SalBow8G4507 Salvia bowleyana HOM05D004036 ORTHO05D004576 8.2e-14 81.3 98 48.0
SalBow8G4816 Salvia bowleyana HOM05D004036 ORTHO05D004576 8.2e-14 81.3 98 48.0
GSVIVG01015440001 Vitis vinifera HOM05D004036 ORTHO05D004576 1.4e-13 80.5 89 51.7
BcaB01g05484 Brassica carinata HOM05D004036 ORTHO05D004576 1.8e-13 80.1 116 44.8
BcaB04g19786 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-13 79.7 89 46.1
BcaB07g29991 Brassica carinata HOM05D004036 ORTHO05D004576 2.4e-13 79.7 104 47.1
Nn8g39276 Nelumbo nucifera HOM05D004036 ORTHO05D004576 1.5e-12 77.0 98 43.9
HanXRQChr03g0077811 Helianthus annuus HOM05D004036 ORTHO05D004576 4.5e-12 75.5 90 47.8
EL10Ac2g02537 Beta vulgaris HOM05D004036 ORTHO05D004576 1.7e-11 73.6 114 43.9
MBI01_g10034_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 5.0e-11 72.0 124 37.9
Sc23g0007020 Simmondsia chinensis HOM05D004036 ORTHO05D004576 8.5e-11 71.2 89 47.2
TAR383G0233 Trochodendron aralioides HOM05D004036 ORTHO05D004576 1.4e-10 70.5 82 41.5
MBI04_g26645_MAGBIO Magnolia biondii HOM05D004036 ORTHO05D004576 1.9e-10 70.1 135 36.3
MELO3C003669.2 Cucumis melo HOM05D004036 ORTHO05D004576 2.5e-10 69.7 63 49.2
AUR62032381 Chenopodium quinoa HOM05D004036 ORTHO05D004576 4.2e-10 68.9 128 39.8
AUR62024838 Chenopodium quinoa HOM05D004036 ORTHO05D004576 9.4e-10 67.8 128 38.3
Glyma.06G073400 Glycine max HOM05D004036 ORTHO05D004576 4.7e-09 65.5 98 40.8
Ah.12g063370 Amaranthus hybridus HOM05D004036 ORTHO05D004576 1.8e-08 63.5 133 36.1
BcaC09g50856 Brassica carinata HOM05D004036 ORTHO05D004576 3.9e-08 62.4 52 55.8
C07p03200 Brassica napus HOM05D004036 ORTHO05D004576 3.9e-08 62.4 46 63.0
BolC7t40715H Brassica oleracea HOM05D004036 ORTHO05D004576 3.9e-08 62.4 46 63.0
C01p19860 Brassica napus HOM05D004036 ORTHO05D004576 5.2e-08 62.0 59 49.2
BolC1t01914H Brassica oleracea HOM05D004036 ORTHO05D004576 5.2e-08 62.0 59 49.2
BraA08t33004Z Brassica rapa HOM05D004036 ORTHO05D004576 5.2e-08 62.0 46 63.0
SGA_v2.0_scaffold169G38632 Striga asiatica HOM05D004036 ORTHO05D004576 8.8e-08 61.2 102 43.1
PSO063G5334 Papaver somniferum HOM05D004036 ORTHO05D004576 1.1e-07 60.8 141 36.2
Phvul.009G097900 Phaseolus vulgaris HOM05D004036 ORTHO05D050263 1.1e-07 60.8 86 36.0
Hund25658 Selenicereus undatus HOM05D004036 ORTHO05D004576 1.1e-07 60.8 104 42.3
DCAR_004372 Daucus carota HOM05D000001 ORTHO05D004044 2.0e-07 60.1 82 37.8
Migut.E01787 Erythranthe guttata HOM05D000001 ORTHO05D004044 7.4e-07 58.2 54 51.9
PSO782G2888 Papaver somniferum HOM05D004036 ORTHO05D004576 1.7e-06 57.0 142 36.6
HPP92_016599 Vanilla planifolia HOM05D000001 ORTHO05D004044 1.7e-06 57.0 51 49.0
Eucgr.C00743 Eucalyptus grandis HOM05D000001 ORTHO05D004044 2.8e-06 56.2 55 49.1
RcHm_v2.0_Chr6g0312051 Rosa chinensis HOM05D000001 ORTHO05D004044 2.8e-06 56.2 55 45.5
Dinv40932 Davidia involucrata HOM05D000001 ORTHO05D004044 3.7e-06 55.8 56 46.4
Prupe.7G234300 Prunus persica HOM05D004036 ORTHO05D004576 4.8e-06 55.5 91 33.0
ATR0037G046 Amborella trichopoda HOM05D004036 ORTHO05D004576 6.3e-06 55.1 152 30.3
MSTRG.25995 Avicennia marina HOM05D000001 ORTHO05D004044 6.3e-06 55.1 56 48.2
Sed0025074 Sechium edule HOM05D004036 ORTHO05D004576 6.3e-06 55.1 127 28.3
HanXRQChr05g0136451 Helianthus annuus HOM05D000001 ORTHO05D004044 8.2e-06 54.7 55 49.1
Oeu019418.1 Olea europaea HOM05D004036 ORTHO05D004576 8.2e-06 54.7 159 28.9
vmacro00208 Vaccinium macrocarpon HOM05D000001 ORTHO05D004044 8.2e-06 54.7 119 28.6


User provided reference genes

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