Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc90.49 Carica papaya HOM05D004587 ORTHO05D005512 1.9e-86 322.4 157 100.0
MD06G1032800 Malus domestica HOM05D004587 ORTHO05D005512 1.7e-21 106.7 88 62.5
CiPaw.12G062400 Carya illinoinensis HOM05D004587 ORTHO05D005512 8.3e-21 104.4 88 58.0
COL.COLO4_17061 Corchorus olitorius HOM05D004587 ORTHO05D005512 3.1e-20 102.4 100 53.0
TWI60G1364 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.4e-20 101.7 88 60.2
TWI81G0220 Tripterygium wilfordii HOM05D004587 ORTHO05D005512 5.4e-20 101.7 88 59.1
CiPaw.11G092100 Carya illinoinensis HOM05D004587 ORTHO05D005512 1.3e-18 97.1 88 53.4
Prupe.5G039100 Prunus persica HOM05D004587 ORTHO05D005512 5.0e-18 95.1 88 55.7
Duzib068G1306 Durio zibethinus HOM05D004587 ORTHO05D005512 1.1e-17 94.0 88 54.5
Manes.17G011700 Manihot esculenta HOM05D004587 ORTHO05D005512 1.1e-17 94.0 89 58.4
RcHm_v2.0_Chr7g0209351 Rosa chinensis HOM05D004587 ORTHO05D005512 1.1e-17 94.0 88 54.5
Thecc.03G229700 Theobroma cacao HOM05D004587 ORTHO05D005512 1.1e-17 94.0 88 55.7
MELO3C003396.2 Cucumis melo HOM05D004587 ORTHO05D005512 1.9e-17 93.2 99 49.5
Potri.003G090600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.9e-17 93.2 88 56.8
Sabra01G0112000 Salix brachista HOM05D004587 ORTHO05D005512 2.5e-17 92.8 89 56.2
CANSAT21G0306 Cannabis sativa HOM05D004587 ORTHO05D005512 9.5e-17 90.9 88 55.7
CsaV3_3G049300 Cucumis sativus L. HOM05D004587 ORTHO05D005512 9.5e-17 90.9 99 48.5
Gohir.A08G157600 Gossypium hirsutum HOM05D004587 ORTHO05D005512 1.2e-16 90.5 88 53.4
Atru.chr6.1737 Acer truncatum HOM05D004587 ORTHO05D005512 1.6e-16 90.1 88 54.5
ClCG09G012070 Citrullus lanatus HOM05D004587 ORTHO05D005512 1.6e-16 90.1 88 53.4
Ciclev10033884m.g Citrus clementina HOM05D004587 ORTHO05D005512 2.1e-16 89.7 88 55.7
Psat2g173440 Pisum sativum HOM05D004587 ORTHO05D005512 3.6e-16 89.0 91 52.7
Gohir.D08G177900 Gossypium hirsutum HOM05D004587 ORTHO05D005512 4.7e-16 88.6 88 52.3
Gorai.004G186100 Gossypium raimondii HOM05D004587 ORTHO05D005512 8.0e-16 87.8 88 52.3
Hma1.2p1_0991F.1_g245040 Hydrangea macrophylla HOM05D004587 ORTHO05D005512 8.0e-16 87.8 88 53.4
FAN18G4447 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.4e-15 87.0 88 52.3
Potri.001G143600 Populus trichocarpa HOM05D004587 ORTHO05D005512 1.8e-15 86.7 89 51.7
Actinidia09217 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.3e-15 86.3 88 51.1
FAN08G2253 Fragaria x ananassa HOM05D004587 ORTHO05D005512 3.0e-15 85.9 88 51.1
Haze_08255 Corylus avellana HOM05D004587 ORTHO05D005512 4.0e-15 85.5 88 53.4
FvH4_5g21840 Fragaria vesca HOM05D004587 ORTHO05D005512 4.0e-15 85.5 88 52.3
Lalb_Chr16g0379161 Lupinus albus HOM05D004587 ORTHO05D005512 4.0e-15 85.5 89 52.8
FAN13G1185 Fragaria x ananassa HOM05D004587 ORTHO05D005512 5.2e-15 85.1 88 51.1
Manes.15G168700 Manihot esculenta HOM05D004587 ORTHO05D005512 5.2e-15 85.1 92 53.3
BcaNung00040 Brassica carinata HOM05D004587 ORTHO05D005512 6.8e-15 84.7 88 47.7
Cfa012421 Carpinus fangiana HOM05D004587 ORTHO05D005512 6.8e-15 84.7 88 51.1
Dinv28943 Davidia involucrata HOM05D004587 ORTHO05D005512 6.8e-15 84.7 88 51.1
Dinv25204 Davidia involucrata HOM05D004587 ORTHO05D005512 8.9e-15 84.3 88 52.3
Cc08_g02530 Coffea canephora HOM05D004587 ORTHO05D005512 2.6e-14 82.8 88 53.4
C01p11800 Brassica napus HOM05D004587 ORTHO05D005512 3.4e-14 82.4 88 46.6
Sed0004713 Sechium edule HOM05D004587 ORTHO05D005512 3.4e-14 82.4 88 53.4
CSS0021945 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 4.4e-14 82.0 88 55.7
CSS0032807 Camellia sinensis var. sinensis HOM05D004587 ORTHO05D005512 4.4e-14 82.0 88 55.7
THA.LOC104812836 Tarenaya hassleriana HOM05D004587 ORTHO05D005512 4.4e-14 82.0 89 46.1
TPR.G7834 Trifolium pratense HOM05D004587 ORTHO05D005512 4.4e-14 82.0 88 52.3
Sed0024230 Sechium edule HOM05D004587 ORTHO05D005512 5.7e-14 81.6 89 51.7
Sabra03G0060300 Salix brachista HOM05D004587 ORTHO05D005512 7.5e-14 81.3 90 51.1
FAN04G0466 Fragaria x ananassa HOM05D004587 ORTHO05D005512 1.3e-13 80.5 88 48.9
QL12p005998 Quercus lobata HOM05D004587 ORTHO05D005512 1.3e-13 80.5 94 46.8
A01p10000 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-13 80.1 88 45.5
BraA01t00944Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-13 80.1 88 45.5
Actinidia25956 Actinidia chinensis HOM05D004587 ORTHO05D005512 2.2e-13 79.7 88 52.3
Sc22g0001460 Simmondsia chinensis HOM05D004587 ORTHO05D005512 2.2e-13 79.7 119 42.0
BcaC09g51581 Brassica carinata HOM05D004587 ORTHO05D005512 2.8e-13 79.3 88 45.5
BolC1t01142H Brassica oleracea HOM05D004587 ORTHO05D005512 2.8e-13 79.3 88 45.5
vmacro14165 Vaccinium macrocarpon HOM05D004587 ORTHO05D005512 2.8e-13 79.3 88 50.0
Thhalv10027517m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 3.7e-13 79.0 88 46.6
Sp7g16150 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.1e-12 77.4 90 46.7
arahy.Tifrunner.gnm1.ann1.QWZQ79 Arachis hypogaea HOM05D004587 ORTHO05D005512 1.4e-12 77.0 125 37.6
arahy.Tifrunner.gnm1.ann1.VNVR7L Arachis hypogaea HOM05D004587 ORTHO05D005512 1.4e-12 77.0 125 37.6
Carub.0008s0129 Capsella rubella HOM05D004587 ORTHO05D005512 1.8e-12 76.6 90 44.4
HanXRQChr02g0043541 Helianthus annuus HOM05D004587 ORTHO05D005512 1.8e-12 76.6 100 44.0
Hund14406 Selenicereus undatus HOM05D004587 ORTHO05D005512 1.8e-12 76.6 88 50.0
GSVIVG01013197001 Vitis vinifera HOM05D004587 ORTHO05D005512 1.8e-12 76.6 88 46.6
DCAR_008278 Daucus carota HOM05D004587 ORTHO05D005512 2.4e-12 76.3 88 46.6
Eucgr.E00288 Eucalyptus grandis HOM05D004587 ORTHO05D005512 2.4e-12 76.3 99 46.5
Lsat_1_v5_gn_6_64781 Lactuca sativa HOM05D004587 ORTHO05D005512 2.4e-12 76.3 89 47.2
AL8G11720 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 4.1e-12 75.5 105 41.0
PGR042G1036 Punica granatum HOM05D004587 ORTHO05D005512 4.1e-12 75.5 88 47.7
MD16G1276500 Malus domestica HOM05D004587 ORTHO05D005512 5.4e-12 75.1 88 50.0
Actinidia03381 Actinidia chinensis HOM05D004587 ORTHO05D005512 9.2e-12 74.3 85 49.4
Aa31LG6G710 Aethionema arabicum HOM05D004587 ORTHO05D005512 9.2e-12 74.3 99 41.4
Nitab4.5_0001276g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.2e-11 73.9 89 40.4
Phvul.002G006600 Phaseolus vulgaris HOM05D004587 ORTHO05D005512 1.2e-11 73.9 91 51.6
Sp2g11450 Schrenkiella parvula HOM05D004587 ORTHO05D005512 1.2e-11 73.9 91 45.1
Solyc08g077040.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 1.2e-11 73.9 88 44.3
Actinidia14814 Actinidia chinensis HOM05D004587 ORTHO05D005512 1.6e-11 73.6 99 46.5
PGSC0003DMG400017533 Solanum tuberosum HOM05D004587 ORTHO05D005512 1.6e-11 73.6 88 44.3
AL7G36550 Arabidopsis lyrata HOM05D004587 ORTHO05D005512 2.0e-11 73.2 88 47.7
AT4G17960 Arabidopsis thaliana HOM05D004587 ORTHO05D005512 2.0e-11 73.2 88 48.9
Thhalv10001062m.g Eutrema salsugineum HOM05D004587 ORTHO05D005512 2.0e-11 73.2 91 44.0
Sopen08g025620 Solanum pennellii HOM05D004587 ORTHO05D005512 2.0e-11 73.2 88 44.3
BcaC06g34365 Brassica carinata HOM05D004587 ORTHO05D005512 2.7e-11 72.8 99 40.4
C07p29850 Brassica napus HOM05D004587 ORTHO05D005512 2.7e-11 72.8 99 40.4
Carub.0007s2338 Capsella rubella HOM05D004587 ORTHO05D005512 2.7e-11 72.8 88 45.5
Rhsim07G0126100 Rhododendron simsii HOM05D004587 ORTHO05D005512 2.7e-11 72.8 88 45.5
CARHR174890 Cardamine hirsuta HOM05D004587 ORTHO05D005512 4.5e-11 72.0 91 42.9
Nn6g33612 Nelumbo nucifera HOM05D004587 ORTHO05D005512 5.9e-11 71.6 88 46.6
PGSC0003DMG402002106 Solanum tuberosum HOM05D004587 ORTHO05D005512 7.8e-11 71.2 117 39.3
Aa31LG9G6270 Aethionema arabicum HOM05D004587 ORTHO05D005512 1.0e-10 70.9 90 45.6
BolC7t43533H Brassica oleracea HOM05D004587 ORTHO05D005512 1.0e-10 70.9 88 43.2
ECA240G1087 Erigeron canadensis HOM05D004587 ORTHO05D005512 1.0e-10 70.9 101 42.6
Lj2g0006519 Lotus japonicus HOM05D004587 ORTHO05D005512 1.0e-10 70.9 88 46.6
Nitab4.5_0006066g0030 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.0e-10 70.9 116 39.7
TAR629G0873 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.0e-10 70.9 88 46.6
A06p45800 Brassica napus HOM05D004587 ORTHO05D005512 1.3e-10 70.5 89 42.7
SHI31713 Sapria himalayana HOM05D000449 ORTHO05D000360 1.3e-10 70.5 83 44.6
A02p30170 Brassica napus HOM05D004587 ORTHO05D005512 1.7e-10 70.1 92 41.3
BraA02t08033Z Brassica rapa HOM05D004587 ORTHO05D005512 1.7e-10 70.1 92 41.3
C02p47640 Brassica napus HOM05D004587 ORTHO05D005512 2.3e-10 69.7 92 40.2
BolC2t10800H Brassica oleracea HOM05D004587 ORTHO05D005512 2.3e-10 69.7 92 40.2
AUR62007272 Chenopodium quinoa HOM05D004587 ORTHO05D005512 2.3e-10 69.7 88 47.7
BraA06t27449Z Brassica rapa HOM05D004587 ORTHO05D005512 2.9e-10 69.3 88 43.2
Oeu035388.1 Olea europaea HOM05D004587 ORTHO05D005512 2.9e-10 69.3 88 47.7
CARHR224700 Cardamine hirsuta HOM05D004587 ORTHO05D005512 3.8e-10 68.9 88 42.0
Medtr5g014320 Medicago truncatula HOM05D004587 ORTHO05D005512 5.0e-10 68.6 91 45.1
Nitab4.5_0001285g0020 Nicotiana tabacum HOM05D004587 ORTHO05D005512 5.0e-10 68.6 88 40.9
Sopen06g021340 Solanum pennellii HOM05D004587 ORTHO05D005512 5.0e-10 68.6 117 38.5
VMungo1215G2797 Vigna mungo HOM05D000740 ORTHO05D005071 5.0e-10 68.6 83 49.4
Glyma.01G199100 Glycine max HOM05D004587 ORTHO05D005512 8.6e-10 67.8 88 48.9
AUR62018727 Chenopodium quinoa HOM05D004587 ORTHO05D005512 1.1e-09 67.4 88 45.5
BcaC06g31462 Brassica carinata HOM05D004587 ORTHO05D005512 1.9e-09 66.6 88 40.9
Peaxi162Scf00615g00515 Petunia axillaris HOM05D004587 ORTHO05D005512 4.3e-09 65.5 89 46.1
EL10Ac5g12139 Beta vulgaris HOM05D004587 ORTHO05D005512 5.6e-09 65.1 88 43.2
TAR375G0250 Trochodendron aralioides HOM05D004587 ORTHO05D005512 1.2e-08 63.9 88 38.6
Nitab4.5_0000256g0420 Nicotiana tabacum HOM05D004587 ORTHO05D005512 1.6e-08 63.5 89 42.7
Solyc06g061140.3 Solanum lycopersicum HOM05D004587 ORTHO05D005512 2.1e-08 63.2 88 44.3
Duzib205G0684 Durio zibethinus HOM05D004587 ORTHO05D005512 2.8e-08 62.8 88 44.3
Lj8A293T23 Lonicera japonica HOM05D004587 ORTHO05D005512 4.7e-08 62.0 90 42.2
Ah.07g200250 Amaranthus hybridus HOM05D004587 ORTHO05D005512 1.0e-07 60.8 88 44.3
PSO063G5829 Papaver somniferum HOM05D004587 ORTHO05D005512 1.4e-07 60.5 107 38.3
SalBow7G3710 Salvia bowleyana HOM05D004587 ORTHO05D005512 1.4e-07 60.5 88 43.2
BcaC03g16867 Brassica carinata HOM05D004587 ORTHO05D005512 1.8e-07 60.1 49 51.0
SGA_v2.0_scaffold108G30874 Striga asiatica HOM05D004587 ORTHO05D005512 1.2e-06 57.4 120 34.2
SGA_v2.0_scaffold195G40785 Striga asiatica HOM05D004587 ORTHO05D005512 1.5e-06 57.0 88 42.0
PSO782G4837 Papaver somniferum HOM05D004587 ORTHO05D005512 2.6e-06 56.2 108 36.1


User provided reference genes

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