Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc90.44 Carica papaya HOM05D007238 ORTHO05D009206 2.9e-188 661.8 342 100.0
Thecc.03G317700 Theobroma cacao HOM05D007238 ORTHO05D009206 3.1e-97 359.4 312 65.4
Atru.chr6.1480 Acer truncatum HOM05D007238 ORTHO05D009206 2.2e-95 353.2 322 61.2
Ciclev10000885m.g Citrus clementina HOM05D007238 ORTHO05D009206 6.5e-95 351.7 312 63.1
Dinv28012 Davidia involucrata HOM05D007238 ORTHO05D009206 1.1e-94 350.9 322 62.1
GSVIVG01022787001 Vitis vinifera HOM05D007238 ORTHO05D009206 2.5e-94 349.7 324 61.4
Dinv22874 Davidia involucrata HOM05D007238 ORTHO05D009206 4.6e-93 345.5 322 60.6
Potri.001G130800 Populus trichocarpa HOM05D007238 ORTHO05D009206 6.7e-92 341.7 323 61.6
Actinidia32774 Actinidia chinensis HOM05D007238 ORTHO05D009206 1.1e-91 340.9 315 61.0
Manes.17G003400 Manihot esculenta HOM05D007238 ORTHO05D009206 1.7e-90 337.0 323 60.7
Gohir.D12G205200 Gossypium hirsutum HOM05D007238 ORTHO05D009206 2.8e-90 336.3 322 61.5
Cfa012591 Carpinus fangiana HOM05D007238 ORTHO05D009206 1.4e-89 334.0 322 59.6
CiPaw.12G071800 Carya illinoinensis HOM05D007238 ORTHO05D009206 4.1e-89 332.4 322 57.8
Haze_08066 Corylus avellana HOM05D007238 ORTHO05D009206 6.9e-89 331.6 323 58.8
Duzib205G0751 Durio zibethinus HOM05D007238 ORTHO05D009206 5.9e-88 328.6 348 58.6
Potri.003G103100 Populus trichocarpa HOM05D007238 ORTHO05D009206 1.9e-86 323.6 303 62.4
TWI36G0279 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 4.2e-86 322.4 322 57.5
Gohir.A12G202500 Gossypium hirsutum HOM05D007238 ORTHO05D009206 4.7e-85 318.9 322 59.9
Gorai.008G220100 Gossypium raimondii HOM05D007238 ORTHO05D009206 1.5e-83 313.9 322 59.0
RcHm_v2.0_Chr7g0213421 Rosa chinensis HOM05D007238 ORTHO05D009206 1.3e-82 310.8 322 56.5
Prupe.5G020000 Prunus persica HOM05D007238 ORTHO05D009206 1.7e-82 310.5 314 57.6
FvH4_5g23980 Fragaria vesca HOM05D007238 ORTHO05D009206 6.3e-82 308.5 322 55.3
PGR031G3591 Punica granatum HOM05D007238 ORTHO05D009206 2.4e-81 306.6 323 57.0
FAN08G1858 Fragaria x ananassa HOM05D007238 ORTHO05D009206 9.1e-81 304.7 313 56.5
FAN18G0294 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.2e-80 304.3 313 55.9
CANSAT21G2527 Cannabis sativa HOM05D007238 ORTHO05D009206 4.5e-80 302.4 323 54.2
FAN18G2161 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.0e-79 301.2 314 56.1
FAN13G1136 Fragaria x ananassa HOM05D007238 ORTHO05D009206 1.3e-79 300.8 322 54.7
Eucgr.D02592 Eucalyptus grandis HOM05D007238 ORTHO05D009206 2.9e-79 299.7 316 56.6
CSS0038403 Camellia sinensis var. sinensis HOM05D007238 ORTHO05D009206 6.5e-79 298.5 306 57.8
Sabra03G0070300 Salix brachista HOM05D007238 ORTHO05D009206 1.9e-78 297.0 302 58.9
Lj8C334G11 Lonicera japonica HOM05D007238 ORTHO05D009206 1.6e-77 293.9 316 57.0
TWI56G0348 Tripterygium wilfordii HOM05D007238 ORTHO05D009206 8.0e-77 291.6 322 54.3
TAR629G0677 Trochodendron aralioides HOM05D007238 ORTHO05D009206 1.1e-75 287.7 311 55.0
Actinidia01264 Actinidia chinensis HOM05D007238 ORTHO05D009206 2.0e-75 287.0 322 53.1
ClCG10G001020 Citrullus lanatus HOM05D007238 ORTHO05D009206 2.0e-75 287.0 315 54.9
Cc08_g05060 Coffea canephora HOM05D007238 ORTHO05D009206 2.4e-73 280.0 323 51.4
MD00G1002000 Malus domestica HOM05D007238 ORTHO05D009206 2.6e-72 276.6 313 54.6
CsaV3_3G001050 Cucumis sativus L. HOM05D007238 ORTHO05D009206 3.5e-72 276.2 322 51.9
MD06G1015600 Malus domestica HOM05D007238 ORTHO05D009206 1.5e-70 270.8 308 53.6
Rhsim11G0025000 Rhododendron simsii HOM05D007238 ORTHO05D009206 2.1e-69 266.9 323 51.7
Sed0015204 Sechium edule HOM05D007238 ORTHO05D009206 6.1e-69 265.4 322 50.6
FAN04G0931 Fragaria x ananassa HOM05D007238 ORTHO05D009206 2.6e-67 260.0 270 55.9
CAN.G1363.6 Capsicum annuum HOM05D007238 ORTHO05D009206 3.1e-65 253.1 323 49.5
VMungo1215G3455 Vigna mungo HOM05D007238 ORTHO05D009206 5.3e-65 252.3 324 50.3
Aqoxy3G02024 Aquilegia oxysepala HOM05D007238 ORTHO05D009206 7.0e-65 251.9 324 49.1
Lalb_Chr05g0215441 Lupinus albus HOM05D007238 ORTHO05D009206 2.0e-64 250.4 323 48.3
Psat2g142200 Pisum sativum HOM05D007238 ORTHO05D009206 4.5e-64 249.2 315 49.8
Lj2g0008424 Lotus japonicus HOM05D007238 ORTHO05D009206 5.9e-64 248.8 323 48.9
MELO3C013794.2 Cucumis melo HOM05D007238 ORTHO05D009206 7.7e-64 248.4 261 54.8
DCAR_008182 Daucus carota HOM05D007238 ORTHO05D009206 1.3e-63 247.7 323 50.5
DCAR_004239 Daucus carota HOM05D007238 ORTHO05D009206 2.9e-63 246.5 317 50.5
Oeu046801.1 Olea europaea HOM05D007238 ORTHO05D009206 2.9e-63 246.5 313 49.8
HanXRQChr03g0081381 Helianthus annuus HOM05D007238 ORTHO05D009206 1.1e-62 244.6 285 54.0
Phvul.002G128600 Phaseolus vulgaris HOM05D007238 ORTHO05D009206 5.5e-62 242.3 324 50.0
ECA233G5138 Erigeron canadensis HOM05D007238 ORTHO05D009206 7.2e-62 241.9 323 48.3
Solyc08g075760.3 Solanum lycopersicum HOM05D007238 ORTHO05D009206 2.7e-61 240.0 323 47.7
Sopen08g024410 Solanum pennellii HOM05D007238 ORTHO05D009206 6.1e-61 238.8 323 47.7
arahy.Tifrunner.gnm1.ann1.0046K4 Arachis hypogaea HOM05D007238 ORTHO05D009206 1.0e-60 238.0 325 48.6
arahy.Tifrunner.gnm1.ann1.BJTL8K Arachis hypogaea HOM05D007238 ORTHO05D009206 1.0e-60 238.0 325 48.6
Medtr5g026850 Medicago truncatula HOM05D007238 ORTHO05D009206 1.4e-60 237.7 327 46.2
Glyma.09G213700 Glycine max HOM05D007238 ORTHO05D009206 3.0e-60 236.5 326 48.5
Nitab4.5_0002930g0030 Nicotiana tabacum HOM05D007238 ORTHO05D009206 2.0e-59 233.8 323 46.7
Ca_25102_v3 Cicer arietinum L. HOM05D007238 ORTHO05D009206 5.7e-59 232.3 323 47.4
TPR.G17266 Trifolium pratense HOM05D007238 ORTHO05D009206 2.8e-58 229.9 324 46.6
Glyma.01G149500 Glycine max HOM05D007238 ORTHO05D009206 1.6e-56 224.2 326 47.5
Lsat_1_v5_gn_3_92801 Lactuca sativa HOM05D007238 ORTHO05D009206 5.9e-56 222.2 300 49.0
Nitab4.5_0000030g0130 Nicotiana tabacum HOM05D007238 ORTHO05D009206 1.0e-55 221.5 325 46.5
PGSC0003DMG400030852 Solanum tuberosum HOM05D007238 ORTHO05D009206 7.2e-54 215.3 323 45.5
PSO782G4691 Papaver somniferum HOM05D007238 ORTHO05D009206 7.5e-51 205.3 325 45.2
Hma1.2p1_1933F.1_g308070 Hydrangea macrophylla HOM05D007238 ORTHO05D009206 4.1e-49 199.5 175 63.4
vmacro00062 Vaccinium macrocarpon HOM05D007238 ORTHO05D009206 2.7e-48 196.8 244 53.7
SalBow8G0140 Salvia bowleyana HOM05D007238 ORTHO05D009206 1.3e-47 194.5 309 45.0
PSO063G0400 Papaver somniferum HOM05D007238 ORTHO05D009206 1.6e-45 187.6 317 44.2
Peaxi162Scf02295g00022 Petunia axillaris HOM05D007238 ORTHO05D009206 4.7e-45 186.0 314 41.4
PSO782G1267 Papaver somniferum HOM05D007238 ORTHO05D009206 6.1e-45 185.7 314 43.6
ATR0829G060 Amborella trichopoda HOM05D007238 ORTHO05D009206 7.0e-41 172.2 314 40.4
HPP92_002457 Vanilla planifolia HOM05D000907 ORTHO05D000753 1.7e-39 167.5 199 50.3
Migut.E01348 Erythranthe guttata HOM05D007238 ORTHO05D009206 1.5e-35 154.5 307 41.4
Os06g0115600 Oryza sativa ssp. japonica HOM05D007238 ORTHO05D009206 9.8e-35 151.8 314 37.6
SEGI_10751 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 2.7e-32 143.7 313 36.4
Zm00001eb378870 Zea mays HOM05D007238 ORTHO05D009206 3.5e-32 143.3 314 36.6
Zm00001eb269110 Zea mays HOM05D007238 ORTHO05D009206 3.0e-31 140.2 310 36.5
HanXRQChr03g0081161 Helianthus annuus HOM05D007238 ORTHO05D009206 8.3e-26 122.1 225 42.2
SEGI_26764 Sequoiadendron giganteum HOM05D007238 ORTHO05D009206 3.1e-12 77.0 81 54.3
HanXRQChr03g0081151 Helianthus annuus HOM05D007238 ORTHO05D009206 9.3e-09 65.5 50 66.0
FvH4_5g27460 Fragaria vesca HOM05D007238 ORTHO05D009206 1.5e-06 58.2 46 65.2


User provided reference genes

Program Settings