Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc90.41 Carica papaya HOM05D005964 ORTHO05D007242 3.2e-147 525.0 260 100.0
MELO3C013795.2 Cucumis melo HOM05D005964 ORTHO05D007242 3.9e-15 86.3 59 69.5
CsaV3_3G001060 Cucumis sativus L. HOM05D005964 ORTHO05D007242 5.0e-15 85.9 59 69.5
AUR62007382 Chenopodium quinoa HOM05D005964 ORTHO05D007242 1.1e-14 84.7 68 60.3
Sabra03G0070200 Salix brachista HOM05D005964 ORTHO05D007242 1.9e-14 84.0 60 68.3
Dinv22873 Davidia involucrata HOM05D005964 ORTHO05D007242 2.5e-14 83.6 44 84.1
ClCG10G001030 Citrullus lanatus HOM05D005964 ORTHO05D007242 3.3e-14 83.2 44 84.1
DCAR_008183 Daucus carota HOM05D005964 ORTHO05D007242 4.3e-14 82.8 59 62.7
AUR62018605 Chenopodium quinoa HOM05D005964 ORTHO05D007242 5.6e-14 82.4 53 71.7
Lj8A334G75 Lonicera japonica HOM05D005964 ORTHO05D007242 5.6e-14 82.4 59 62.7
Sed0000446 Sechium edule HOM05D005964 ORTHO05D007242 5.6e-14 82.4 44 84.1
EL10Ac5g11971 Beta vulgaris HOM05D005964 ORTHO05D007242 9.5e-14 81.6 44 79.5
Potri.003G103000 Populus trichocarpa HOM05D005964 ORTHO05D007242 1.2e-13 81.3 44 79.5
Sc01g0007030 Simmondsia chinensis HOM05D005964 ORTHO05D007242 1.2e-13 81.3 44 81.8
Hma1.2p1_0544F.1_g175510 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.6e-13 80.9 44 81.8
Hma1.2p1_0544F.1_g175520 Hydrangea macrophylla HOM05D005964 ORTHO05D007242 1.6e-13 80.9 44 81.8
Nitab4.5_0000030g0090 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.6e-13 80.9 44 81.8
Nitab4.5_0002930g0010 Nicotiana tabacum HOM05D005964 ORTHO05D007242 1.6e-13 80.9 44 81.8
Dinv28013 Davidia involucrata HOM05D005964 ORTHO05D007242 2.1e-13 80.5 44 81.8
Lj2g0015502 Lotus japonicus HOM05D005964 ORTHO05D007242 2.1e-13 80.5 64 64.1
TAR381G0569 Trochodendron aralioides HOM05D005964 ORTHO05D007242 2.1e-13 80.5 44 81.8
CSS0036776 Camellia sinensis var. sinensis HOM05D005964 ORTHO05D007242 2.8e-13 80.1 43 81.4
Gohir.A03G000012 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.8e-13 80.1 44 79.5
Gohir.D03G177900 Gossypium hirsutum HOM05D005964 ORTHO05D007242 2.8e-13 80.1 44 79.5
Gorai.003G187200 Gossypium raimondii HOM05D005964 ORTHO05D007242 2.8e-13 80.1 44 79.5
VMungo1215G0316 Vigna mungo HOM05D005964 ORTHO05D007242 2.8e-13 80.1 56 69.6
CANSAT21G0049 Cannabis sativa HOM05D005964 ORTHO05D007242 3.6e-13 79.7 44 77.3
Aqoxy7G00888 Aquilegia oxysepala HOM05D005964 ORTHO05D007242 4.7e-13 79.3 44 79.5
ECA240G3292 Erigeron canadensis HOM05D005964 ORTHO05D007242 4.7e-13 79.3 44 77.3
Phvul.002G128700 Phaseolus vulgaris HOM05D005964 ORTHO05D007242 4.7e-13 79.3 56 67.9
MSTRG.13905 Avicennia marina HOM05D005964 ORTHO05D007242 6.2e-13 79.0 44 79.5
MSTRG.1771 Avicennia marina HOM05D005964 ORTHO05D007242 6.2e-13 79.0 43 79.1
Glyma.01G149400 Glycine max HOM05D005964 ORTHO05D007242 6.2e-13 79.0 56 67.9
Peaxi162Scf02295g00024 Petunia axillaris HOM05D005964 ORTHO05D007242 6.2e-13 79.0 44 79.5
QL12p001050 Quercus lobata HOM05D005964 ORTHO05D007242 6.2e-13 79.0 44 79.5
Sabra01G0101200 Salix brachista HOM05D005964 ORTHO05D007242 6.2e-13 79.0 49 73.5
Solyc08g075770.3 Solanum lycopersicum HOM05D005964 ORTHO05D007242 6.2e-13 79.0 44 79.5
Sopen08g024420 Solanum pennellii HOM05D005964 ORTHO05D007242 6.2e-13 79.0 44 79.5
Lsat_1_v5_gn_5_58981 Lactuca sativa HOM05D005964 ORTHO05D007242 1.1e-12 78.2 44 75.0
Manes.17G003600 Manihot esculenta HOM05D005964 ORTHO05D007242 1.1e-12 78.2 44 77.3
Hund11143 Selenicereus undatus HOM05D005964 ORTHO05D007242 1.1e-12 78.2 50 66.0
Duzib205G1143 Durio zibethinus HOM05D005964 ORTHO05D007242 1.4e-12 77.8 44 77.3
PGR042G2449 Punica granatum HOM05D005964 ORTHO05D007242 1.4e-12 77.8 44 75.0
Ciclev10002048m.g Citrus clementina HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 75.0
FvH4_5g23960 Fragaria vesca HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
FAN13G2421 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
FAN18G2518 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
FAN18G4345 Fragaria x ananassa HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
Gohir.A08G150100 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
Gohir.D08G171200 Gossypium hirsutum HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
Gorai.004G178600 Gossypium raimondii HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
PSO717G0069 Papaver somniferum HOM05D005964 ORTHO05D007242 1.8e-12 77.4 43 76.7
Rhsim07G0138900 Rhododendron simsii HOM05D005964 ORTHO05D007242 1.8e-12 77.4 59 59.3
GSVIVG01022785001 Vitis vinifera HOM05D005964 ORTHO05D007242 1.8e-12 77.4 44 77.3
Cfa012590 Carpinus fangiana HOM05D005964 ORTHO05D007242 2.3e-12 77.0 44 75.0
Glyma.09G213600 Glycine max HOM05D005964 ORTHO05D007242 2.3e-12 77.0 56 66.1
HanXRQChr13g0412031 Helianthus annuus HOM05D005964 ORTHO05D007242 2.3e-12 77.0 43 76.7
Lalb_Chr05g0215451 Lupinus albus HOM05D005964 ORTHO05D007242 2.3e-12 77.0 58 63.8
TPR.G17260 Trifolium pratense HOM05D005964 ORTHO05D007242 2.3e-12 77.0 56 66.1
Atru.chr6.1471 Acer truncatum HOM05D005964 ORTHO05D007242 3.1e-12 76.6 44 75.0
arahy.Tifrunner.gnm1.ann1.NL6YXC Arachis hypogaea HOM05D005964 ORTHO05D007242 3.1e-12 76.6 45 73.3
arahy.Tifrunner.gnm1.ann1.PBCI2P Arachis hypogaea HOM05D005964 ORTHO05D007242 3.1e-12 76.6 45 73.3
Migut.E01349 Erythranthe guttata HOM05D005964 ORTHO05D007242 3.1e-12 76.6 44 77.3
Medtr5g026860 Medicago truncatula HOM05D005964 ORTHO05D007242 3.1e-12 76.6 56 66.1
Potri.001G130900 Populus trichocarpa HOM05D005964 ORTHO05D007242 3.1e-12 76.6 44 77.3
MBI04_g27277_MAGBIO Magnolia biondii HOM05D005964 ORTHO05D007242 4.0e-12 76.3 74 52.7
Nn1g02066 Nelumbo nucifera HOM05D005964 ORTHO05D007242 4.0e-12 76.3 43 79.1
SalBow8G2874 Salvia bowleyana HOM05D005964 ORTHO05D007242 4.0e-12 76.3 44 75.0
unitig_899.g14736 Utricularia gibba HOM05D005964 ORTHO05D007242 4.0e-12 76.3 61 59.0
PSO675G7054 Papaver somniferum HOM05D005964 ORTHO05D007242 5.2e-12 75.9 43 74.4
THA.LOC104811073 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 5.2e-12 75.9 44 79.5
vmacro14234 Vaccinium macrocarpon HOM05D005964 ORTHO05D007242 5.2e-12 75.9 43 76.7
BraA03t14264Z Brassica rapa HOM05D005964 ORTHO05D007242 6.8e-12 75.5 51 74.5
Oeu046805.1 Olea europaea HOM05D005964 ORTHO05D007242 6.8e-12 75.5 44 70.5
Psat2g142160 Pisum sativum HOM05D005964 ORTHO05D007242 6.8e-12 75.5 56 64.3
Cc08_g05080 Coffea canephora HOM05D005964 ORTHO05D007242 8.9e-12 75.1 44 75.0
Actinidia14743 Actinidia chinensis HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 75.0
A01p11100 Brassica napus HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 77.3
BraA01t01056Z Brassica rapa HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 77.3
Eucgr.E01230 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 75.0
Eucgr.E01239 Eucalyptus grandis HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 75.0
MD00G1001800 Malus domestica HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 72.7
MD06G1015300 Malus domestica HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 72.7
Prupe.5G020400 Prunus persica HOM05D005964 ORTHO05D007242 1.2e-11 74.7 44 72.7
AL7G34950 Arabidopsis lyrata HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
AT4G19140 Arabidopsis thaliana HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
BcaC06g30611 Brassica carinata HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
BcaC09g51437 Brassica carinata HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
BcaNung04009 Brassica carinata HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
C01p13130 Brassica napus HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
BolC1t01286H Brassica oleracea HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
CARHR226010 Cardamine hirsuta HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
CiPaw.11G103200 Carya illinoinensis HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 79.5
Thhalv10025843m.g Eutrema salsugineum HOM05D005964 ORTHO05D007242 1.5e-11 74.3 44 77.3
Os04g0600400 Oryza sativa ssp. japonica HOM05D005964 ORTHO05D007242 1.5e-11 74.3 64 57.8
BcaNung03076 Brassica carinata HOM05D005964 ORTHO05D007242 2.0e-11 73.9 44 77.3
C07p50270 Brassica napus HOM05D005964 ORTHO05D007242 2.0e-11 73.9 44 77.3
BolC7t45529H Brassica oleracea HOM05D005964 ORTHO05D007242 2.0e-11 73.9 44 77.3
Carub.0007s2201 Capsella rubella HOM05D005964 ORTHO05D007242 2.0e-11 73.9 44 77.3
SGA_v2.0_scaffold111G31365 Striga asiatica HOM05D005964 ORTHO05D007242 2.0e-11 73.9 44 72.7
Actinidia18160 Actinidia chinensis HOM05D005964 ORTHO05D007242 3.4e-11 73.2 43 76.7
HanXRQChr03g0081171 Helianthus annuus HOM05D005964 ORTHO05D007242 3.4e-11 73.2 44 68.2
Sp7g17840 Schrenkiella parvula HOM05D005964 ORTHO05D007242 5.8e-11 72.4 44 75.0
Thecc.03G317600 Theobroma cacao HOM05D005964 ORTHO05D007242 5.8e-11 72.4 44 70.5
RcHm_v2.0_Chr7g0213391 Rosa chinensis HOM05D005964 ORTHO05D007242 7.5e-11 72.0 44 70.5
Zm00001eb071860 Zea mays HOM05D005964 ORTHO05D007242 7.5e-11 72.0 64 56.2
Duzib084G0482 Durio zibethinus HOM05D005964 ORTHO05D007242 9.8e-11 71.6 44 70.5
THA.LOC104806194 Tarenaya hassleriana HOM05D005964 ORTHO05D007242 9.8e-11 71.6 43 74.4
arahy.Tifrunner.gnm1.ann1.MDU2JP Arachis hypogaea HOM05D005964 ORTHO05D007242 3.7e-10 69.7 59 54.2
A03p51750 Brassica napus HOM05D005964 ORTHO05D007242 3.7e-10 69.7 44 75.0
Aa31LG6G1830 Aethionema arabicum HOM05D005964 ORTHO05D007242 6.4e-10 68.9 43 69.8
CDE12G0810 Ceratophyllum demersum HOM05D005964 ORTHO05D007242 6.4e-10 68.9 42 66.7
ATR0829G145 Amborella trichopoda HOM05D005964 ORTHO05D007242 1.9e-09 67.4 44 65.9
PSO717G0022 Papaver somniferum HOM05D005964 ORTHO05D007242 3.2e-09 66.6 43 67.4
SEGI_32375 Sequoiadendron giganteum HOM05D005964 ORTHO05D007242 4.1e-09 66.2 44 63.6
TWI12G1028 Tripterygium wilfordii HOM05D005964 ORTHO05D007242 3.5e-08 63.2 44 65.9


User provided reference genes

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