Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 7.8e-163 577.0 282 100.0
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.7e-88 328.9 277 59.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 8.3e-88 327.8 281 57.3
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.8e-87 326.6 272 58.1
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 2.4e-87 326.2 282 55.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 5.4e-87 325.1 275 59.3
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.2e-83 313.9 281 54.8
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 1.2e-83 313.9 262 57.6
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 4.0e-82 308.9 281 55.5
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 8.8e-82 307.8 278 54.3
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 3.4e-81 305.8 281 53.0
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 4.4e-81 305.4 281 55.5
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 2.2e-80 303.1 282 53.9
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.8e-79 300.1 262 55.7
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 4.1e-79 298.9 261 56.7
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.9e-77 292.7 275 56.7
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 3.8e-77 292.4 277 53.4
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 3.8e-77 292.4 277 53.4
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 8.6e-77 291.2 261 55.6
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-76 290.0 277 53.1
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.2e-76 288.9 282 52.1
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.2e-76 288.9 271 53.1
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.2e-76 288.9 271 53.1
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 5.6e-76 288.5 278 51.8
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.6e-75 287.0 270 53.3
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 3.0e-74 282.7 298 52.3
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 4.0e-74 282.3 261 52.9
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 6.8e-74 281.6 280 50.7
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.5e-73 280.4 267 50.6
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 4.4e-73 278.9 311 47.9
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 9.8e-73 277.7 221 61.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 2.2e-72 276.6 282 48.9
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 6.4e-72 275.0 276 50.4
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 8.3e-72 274.6 261 50.2
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-71 274.2 263 54.0
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-71 274.2 263 54.0
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 1.1e-71 274.2 263 54.0
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 3.2e-71 272.7 263 54.0
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 7.0e-71 271.6 278 50.7
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 7.0e-71 271.6 263 54.0
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.2e-70 270.8 269 50.6
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.6e-70 270.4 269 49.8
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.7e-70 269.6 263 53.6
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 4.6e-70 268.9 270 51.5
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.8e-70 268.1 260 53.5
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 3.9e-69 265.8 283 48.8
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 3.9e-69 265.8 263 52.5
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 5.0e-69 265.4 271 49.1
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 8.6e-69 264.6 276 49.6
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 1.1e-68 264.2 263 51.0
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 2.5e-68 263.1 257 50.2
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 3.3e-68 262.7 257 50.2
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 7.3e-68 261.5 257 50.2
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.3e-68 261.5 248 54.0
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.8e-67 259.6 248 53.6
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.0e-66 257.7 248 53.2
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.4e-66 257.3 216 57.4
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 1.4e-66 257.3 284 48.2
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 2.0e-65 253.4 281 47.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 3.4e-65 252.7 232 54.3
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 3.4e-65 252.7 261 50.2
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 9.8e-65 251.1 262 48.1
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 1.7e-64 250.4 269 48.7
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.9e-63 246.9 254 50.4
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 3.2e-63 246.1 266 46.6
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 1.2e-62 244.2 253 50.6
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 2.0e-62 243.4 275 46.9
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 6.0e-62 241.9 271 43.9
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 6.0e-62 241.9 272 44.9
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 1.0e-61 241.1 263 49.4
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 1.3e-61 240.7 281 45.6
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 3.9e-61 239.2 261 45.6
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 8.6e-61 238.0 272 44.5
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.5e-60 237.3 281 46.6
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.5e-60 237.3 233 51.1
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 3.3e-60 236.1 283 47.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 7.3e-60 235.0 283 47.3
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 7.3e-60 235.0 283 47.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.8e-59 233.0 270 47.0
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 3.6e-59 232.6 233 51.1
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 6.2e-59 231.9 282 47.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 4.4e-57 225.7 264 47.3
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 4.9e-56 222.2 249 45.4
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 8.3e-56 221.5 244 46.7
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.4e-55 219.9 281 44.1
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 2.4e-55 219.9 262 43.9
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 4.1e-55 219.2 273 45.4
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 4.1e-55 219.2 272 46.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.3e-53 214.2 269 44.2
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.3e-53 213.4 186 62.9
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 3.0e-53 213.0 190 54.2
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.9e-53 212.6 257 44.7
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.6e-53 211.8 258 44.6
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 8.6e-53 211.5 277 43.3
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-52 210.3 257 44.4
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-52 210.3 257 44.4
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-52 209.5 257 44.0
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-52 209.5 257 44.0
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-52 209.1 257 44.0
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-52 209.1 257 44.4
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.3e-52 209.1 247 45.3
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 7.3e-52 208.4 273 44.0
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.3e-52 208.4 257 44.0
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-51 207.6 257 44.0
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 2.8e-51 206.5 270 44.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 4.7e-51 205.7 266 42.9
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 4.7e-51 205.7 266 42.9
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.2e-51 205.3 257 44.0
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 1.4e-50 204.1 291 39.9
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 3.1e-50 203.0 277 41.9
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.5e-49 200.7 154 66.2
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 4.4e-49 199.1 266 41.0
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 4.4e-49 199.1 266 41.0
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.7e-48 197.2 266 40.6
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 8.4e-48 194.9 272 42.3
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 2.4e-47 193.4 282 41.8
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-47 192.6 234 45.3
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 6.0e-46 188.7 252 42.1
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 3.3e-44 183.0 199 48.7
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.1e-42 177.9 243 41.6
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 8.9e-42 174.9 254 40.2
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-41 173.3 193 46.1
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.6e-41 171.8 167 50.9
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-40 170.2 173 49.1
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.9e-39 167.2 173 48.6
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 3.2e-39 166.4 217 45.2
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 7.1e-39 165.2 263 39.9
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 4.6e-38 162.5 245 38.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 3.0e-37 159.8 216 40.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 3.0e-37 159.8 245 38.4
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.3e-36 156.4 270 36.7
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 4.3e-36 156.0 229 41.5
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.0e-33 147.1 141 51.1
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.1e-30 137.1 130 54.6
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.6e-28 128.3 165 43.6
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 1.5e-25 120.9 205 34.6
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-24 117.1 144 42.4
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 1.6e-22 110.9 202 31.7
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 8.1e-19 98.6 207 31.4
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.8e-18 97.4 101 51.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 2.9e-16 90.1 198 30.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.3e-11 72.4 89 38.2
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 1.4e-10 71.2 90 41.1


User provided reference genes

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