Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.1e-110 403.3 200 100.0
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 4.7e-69 265.0 197 69.0
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 7.9e-69 264.2 200 67.0
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.8e-68 263.1 202 66.8
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.8e-68 263.1 202 66.3
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 9.7e-67 257.3 201 64.2
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.2e-66 256.1 204 65.7
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 6.3e-66 254.6 202 64.9
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 1.1e-65 253.8 200 66.0
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.8e-65 253.1 205 65.4
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 2.4e-65 252.7 203 63.5
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.1e-65 252.3 202 66.3
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 7.0e-65 251.1 202 63.9
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 7.0e-65 251.1 200 65.0
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.6e-64 250.0 204 64.7
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 3.5e-64 248.8 203 63.1
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 4.5e-64 248.4 204 62.3
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 5.9e-64 248.1 200 64.5
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 5.9e-64 248.1 200 61.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-63 246.9 202 65.8
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 2.2e-63 246.1 205 62.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.9e-63 245.7 202 65.3
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 5.0e-63 245.0 200 62.5
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 6.5e-63 244.6 203 62.1
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.5e-62 243.4 202 65.3
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.5e-62 242.7 201 62.7
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 3.2e-62 242.3 205 62.9
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 7.2e-62 241.1 204 60.3
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 9.4e-62 240.7 205 61.5
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.2e-61 240.4 202 61.9
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.7e-61 239.2 205 62.9
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.7e-61 239.2 216 61.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.1e-61 238.0 202 61.9
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 6.1e-61 238.0 202 61.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.0e-60 237.3 202 60.4
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.0e-60 237.3 201 61.7
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.0e-60 237.3 201 61.7
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.3e-60 236.1 186 63.4
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 5.2e-60 235.0 201 60.7
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 6.7e-60 234.6 204 61.8
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.8e-60 234.2 202 60.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.0e-59 233.0 202 58.9
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.3e-59 232.3 202 59.9
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 5.7e-59 231.5 219 57.1
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 7.5e-59 231.1 203 61.1
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 7.5e-59 231.1 203 61.1
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.5e-59 231.1 209 59.8
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.8e-58 229.2 202 59.9
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 4.8e-58 228.4 203 60.6
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 8.2e-58 227.6 204 59.3
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 8.2e-58 227.6 204 59.3
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.1e-57 227.3 202 57.9
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 7.0e-57 224.6 200 61.5
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 9.1e-57 224.2 201 61.2
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-56 223.4 199 60.8
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.0e-56 223.0 201 59.7
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 2.0e-56 223.0 201 59.7
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 7.7e-56 221.1 204 58.3
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.7e-56 221.1 204 57.8
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 7.7e-56 221.1 202 57.9
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.3e-55 220.3 208 58.2
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.7e-55 219.9 201 57.7
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.7e-55 219.9 204 57.4
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.2e-55 219.5 204 57.4
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 2.9e-55 219.2 201 56.2
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 5.0e-55 218.4 200 59.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 6.5e-55 218.0 200 61.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-54 216.9 204 60.3
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.2e-54 215.3 202 56.4
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 5.5e-54 214.9 205 57.1
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 7.2e-54 214.5 199 58.8
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 7.2e-54 214.5 200 60.0
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.2e-53 213.8 207 54.1
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.6e-53 213.4 200 58.5
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.1e-53 213.0 200 54.0
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 3.6e-53 212.2 199 56.3
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.6e-53 212.2 206 56.8
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 4.7e-53 211.8 196 58.2
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 6.1e-53 211.5 200 58.5
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 6.1e-53 211.5 200 58.5
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 8.0e-53 211.1 200 61.0
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.4e-52 210.3 198 55.1
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.8e-52 209.9 201 59.7
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 2.3e-52 209.5 200 57.0
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 3.0e-52 209.1 205 54.6
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 4.0e-52 208.8 196 56.1
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 4.0e-52 208.8 198 55.6
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 6.8e-52 208.0 204 55.4
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.8e-52 207.6 203 57.6
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 8.8e-52 207.6 205 52.2
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.5e-51 206.8 206 55.8
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.0e-51 206.5 272 45.2
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 4.4e-51 205.3 198 56.1
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 4.4e-51 205.3 198 56.1
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 4.4e-51 205.3 198 56.1
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 4.4e-51 205.3 204 56.4
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 5.7e-51 204.9 204 53.9
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 5.7e-51 204.9 204 53.9
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 7.5e-51 204.5 207 52.7
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 9.8e-51 204.1 200 57.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 2.2e-50 203.0 209 54.1
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 2.2e-50 203.0 209 52.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.2e-50 203.0 209 54.5
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 3.7e-50 202.2 200 55.0
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 8.3e-50 201.1 200 56.5
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.1e-49 200.7 198 53.0
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.8e-49 199.9 208 54.8
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.8e-49 199.9 262 45.0
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 2.4e-49 199.5 155 65.8
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 9.1e-49 197.6 200 56.5
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.6e-48 196.8 213 50.7
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.0e-48 196.4 201 54.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 2.7e-48 196.1 211 50.7
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 4.5e-48 195.3 198 55.1
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 4.5e-48 195.3 198 55.1
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 5.9e-48 194.9 197 55.8
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.0e-47 194.1 200 55.0
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-47 193.7 201 53.7
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.3e-47 193.7 207 52.7
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.3e-47 193.0 151 68.9
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.3e-47 193.0 214 52.3
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 8.6e-47 191.0 196 53.1
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.5e-46 190.3 201 54.2
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 2.5e-46 189.5 204 53.4
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.1e-45 186.4 203 51.2
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.3e-44 183.0 198 50.5
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 5.2e-44 181.8 162 60.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 3.4e-43 179.1 197 49.7
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 7.5e-43 177.9 230 45.7
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.3e-42 177.2 201 53.2
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 2.8e-42 176.0 198 49.0
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.9e-42 175.3 175 54.3
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 7.0e-41 171.4 202 48.0
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 3.5e-40 169.1 198 49.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 4.5e-40 168.7 200 49.0
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.7e-39 166.8 203 48.8
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.1e-38 164.1 119 69.7
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 1.5e-38 163.7 202 48.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.1e-37 159.8 187 50.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 3.0e-36 156.0 94 79.8
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 8.9e-36 154.5 172 48.8
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.5e-35 153.7 173 49.7
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 2.2e-34 149.8 157 53.5
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.6e-32 143.7 202 43.6
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-32 143.7 156 52.6
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.7e-31 140.2 140 56.4
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 1.9e-30 136.7 131 57.3
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.3e-30 136.0 91 70.3
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 7.3e-30 134.8 123 57.7
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 4.7e-29 132.1 153 45.1
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 8.0e-29 131.3 162 45.1
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 1.1e-28 131.0 169 44.4
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.8e-27 125.2 166 48.8
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 3.7e-26 122.5 140 48.6
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 3.7e-26 122.5 89 65.2
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.9e-25 120.2 125 55.2
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 3.3e-22 109.4 124 47.6
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 4.3e-22 109.0 157 45.9
AL1G46410 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 9.9e-19 97.8 123 45.5
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 1.9e-17 93.6 73 64.4
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 3.0e-15 86.3 200 37.0
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.1e-14 84.3 102 45.1
Haze_08158 Corylus avellana HOM05D002388 ORTHO05D004745 1.5e-14 84.0 88 51.1
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 8.9e-12 74.7 54 64.8
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.2e-11 74.3 44 81.8
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.2e-11 74.3 44 81.8
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.2e-11 74.3 44 79.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 3.4e-11 72.8 52 63.5
TPR.G3332 Trifolium pratense HOM05D000188 ORTHO05D000362 3.4e-11 72.8 101 38.6
BcaC01g02570 Brassica carinata HOM05D002388 ORTHO05D004745 7.6e-11 71.6 102 46.1
BolC3t18589H Brassica oleracea HOM05D002388 ORTHO05D004745 7.6e-11 71.6 102 46.1
BcaC05g25932 Brassica carinata HOM05D002388 ORTHO05D004745 9.9e-11 71.2 102 48.0
C05p18840 Brassica napus HOM05D002388 ORTHO05D004745 9.9e-11 71.2 102 48.0
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.7e-10 70.5 84 45.2
C03p63360 Brassica napus HOM05D002388 ORTHO05D004745 1.5e-06 57.4 85 45.9
MELO3C003432.2 Cucumis melo HOM05D002388 ORTHO05D004745 9.6e-06 54.7 91 38.5


User provided reference genes

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