Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 1.1e-78 296.6 150 100.0
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 1.2e-64 250.0 150 80.0
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.0e-64 249.2 147 81.6
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 2.0e-64 249.2 147 81.6
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 2.0e-64 249.2 147 81.6
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 2.6e-64 248.8 147 81.6
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 2.6e-64 248.8 147 80.3
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.4e-64 248.1 150 79.3
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.9e-62 242.7 150 78.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 1.9e-62 242.7 150 78.7
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 2.4e-62 242.3 150 79.3
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 7.1e-62 240.7 150 77.3
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.6e-61 239.6 150 76.7
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 2.1e-61 239.2 150 76.7
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 2.1e-61 239.2 150 76.7
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 2.1e-61 239.2 150 77.3
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 2.7e-61 238.8 150 76.7
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 2.7e-61 238.8 150 76.7
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.7e-61 238.8 149 77.9
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 78.0
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 3.5e-61 238.4 150 77.3
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 4.6e-61 238.0 150 76.7
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 76.0
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 1.0e-60 236.9 150 76.0
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.3e-60 236.5 150 74.0
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 3.0e-60 235.3 148 77.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.1e-59 233.4 150 74.7
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 1.5e-59 233.0 149 75.2
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 1.5e-59 233.0 148 76.4
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 2.5e-59 232.3 149 73.8
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 2.5e-59 232.3 150 76.0
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 3.3e-59 231.9 150 74.7
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 4.3e-59 231.5 162 71.6
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 4.3e-59 231.5 157 73.9
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 74.7
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 9.5e-59 230.3 150 74.7
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.1e-58 229.2 150 72.7
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 2.1e-58 229.2 150 73.3
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 74.7
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 74.0
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 2.8e-58 228.8 150 72.7
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 72.7
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.6e-58 228.4 150 74.0
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 8.1e-58 227.3 160 71.2
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 72.0
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 1.1e-57 226.9 150 73.3
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.1e-57 226.9 149 72.5
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 2.4e-57 225.7 150 73.3
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.1e-57 225.3 150 72.7
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.0e-57 224.9 150 72.7
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 6.8e-57 224.2 150 73.3
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 2.0e-56 222.6 161 70.8
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 2.6e-56 222.2 150 71.3
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 3.4e-56 221.9 147 71.4
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 4.4e-56 221.5 147 72.8
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 9.9e-56 220.3 151 70.9
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 9.9e-56 220.3 150 70.0
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 9.9e-56 220.3 148 68.9
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 1.3e-55 219.9 148 70.3
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 1.3e-55 219.9 148 70.3
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 1.3e-55 219.9 150 68.7
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 71.3
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.7e-55 219.5 150 70.0
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 2.9e-55 218.8 146 69.9
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 4.9e-55 218.0 181 62.4
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 9.2e-54 213.8 135 77.8
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 2.1e-53 212.6 144 70.1
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 145 69.7
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 145 69.7
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 144 70.1
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.1e-53 212.6 144 70.1
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 2.1e-53 212.6 150 69.3
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.7e-53 212.2 144 70.1
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.7
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 3.5e-53 211.8 150 66.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 4.6e-53 211.5 147 68.7
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 6.0e-53 211.1 149 67.1
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 6.0e-53 211.1 144 69.4
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 6.0e-53 211.1 149 65.1
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 68.7
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.0e-52 210.3 148 66.9
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 66.0
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 1.0e-52 210.3 150 68.0
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 67.3
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 1.7e-52 209.5 149 67.8
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.7e-52 209.5 150 67.3
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 2.3e-52 209.1 150 68.0
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 2.3e-52 209.1 149 65.1
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 3.0e-52 208.8 149 65.1
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 5.1e-52 208.0 147 66.7
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 5.1e-52 208.0 147 66.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 1.1e-51 206.8 150 65.3
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 1.1e-51 206.8 149 64.4
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 1.5e-51 206.5 148 66.2
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 1.9e-51 206.1 150 66.0
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 4.3e-51 204.9 149 63.8
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 4.3e-51 204.9 149 64.4
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 7.3e-51 204.1 149 64.4
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 1.2e-50 203.4 149 64.4
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 1.2e-50 203.4 152 65.1
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 1.6e-50 203.0 149 63.8
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 2.1e-50 202.6 148 69.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 3.6e-50 201.8 150 66.0
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 3.6e-50 201.8 143 66.4
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 4.7e-50 201.4 149 62.4
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.4e-49 199.9 150 64.0
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.8e-49 199.5 149 62.4
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 2.4e-49 199.1 147 65.3
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 3.1e-49 198.7 150 64.7
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 3.1e-49 198.7 140 67.1
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 6.9e-49 197.6 150 64.0
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 9.0e-49 197.2 150 62.0
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 9.0e-49 197.2 150 62.0
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 1.2e-48 196.8 149 61.1
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.4e-48 194.9 161 59.6
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 5.8e-48 194.5 150 62.7
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 5.8e-48 194.5 148 63.5
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 7.6e-48 194.1 148 62.8
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 9.9e-48 193.7 150 62.7
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.3e-47 193.4 222 48.6
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.7e-47 193.0 170 58.8
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 2.2e-47 192.6 151 61.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 4.9e-47 191.4 150 61.3
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.9e-47 191.4 149 59.7
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 8.4e-47 190.7 143 62.2
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 8.4e-47 190.7 143 62.2
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.9e-46 189.5 193 53.4
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.4e-46 189.1 147 62.6
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 3.2e-46 188.7 143 62.2
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 4.2e-46 188.3 150 60.7
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 9.3e-46 187.2 140 63.6
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 9.3e-46 187.2 149 61.1
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 2.1e-45 186.0 140 64.3
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 4.6e-45 184.9 148 64.9
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 2.3e-44 182.6 144 60.4
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 3.6e-42 175.3 151 64.9
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 8.1e-42 174.1 142 63.4
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 6.4e-39 164.5 107 72.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 2.4e-38 162.5 151 57.6
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 4.6e-37 158.3 149 51.7
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-35 153.7 108 66.7
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 1.1e-35 153.7 108 66.7
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 9.6e-35 150.6 129 58.9
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 9.6e-35 150.6 129 58.9
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 2.1e-34 149.4 149 51.0
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 1.8e-33 146.4 89 75.3
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 2.6e-32 142.5 99 67.7
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.8e-32 141.4 105 61.9
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 9.9e-32 140.6 151 50.3
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.2e-31 139.4 89 75.3
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.9e-30 136.3 103 64.1
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 2.4e-30 136.0 133 51.9
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.6e-29 133.3 89 71.9
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 6.7e-28 127.9 150 46.0
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 4.8e-26 121.7 82 63.4
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-24 117.1 103 55.3
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 2.6e-24 115.9 149 43.0
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 4.5e-24 115.2 91 57.1
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 1.7e-23 113.2 86 58.1
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 5.5e-22 108.2 139 38.8
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 4.3e-19 98.6 150 40.7
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 7.4e-19 97.8 138 32.6
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.8e-18 95.9 138 33.3
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 8.2e-18 94.4 72 62.5
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 4.5e-16 88.6 102 44.1
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 7.6e-16 87.8 149 31.5
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 7.2e-14 81.3 87 46.0
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 7.2e-14 81.3 52 71.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 5.1e-12 75.1 104 31.7
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 2.5e-11 72.8 44 72.7
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 3.3e-11 72.4 81 50.6
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.2e-08 63.9 135 25.9
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 2.6e-08 62.8 136 25.7
AUR62023777 Chenopodium quinoa HOM05D003922 ORTHO05D004492 7.7e-08 61.2 46 63.0
AL1G15650 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-07 60.8 82 43.9


User provided reference genes

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