Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.366 Carica papaya HOM05D003581 ORTHO05D004332 2.8e-216 755.0 372 100.0
Thecc.04G165500 Theobroma cacao HOM05D003581 ORTHO05D004332 6.0e-86 322.0 187 84.5
Duzib268G0130 Durio zibethinus HOM05D003581 ORTHO05D004332 3.9e-85 319.3 187 84.5
Potri.013G127000 Populus trichocarpa HOM05D003581 ORTHO05D004332 2.5e-84 316.6 187 82.9
COL.COLO4_06497 Corchorus olitorius HOM05D003581 ORTHO05D004332 1.6e-83 313.9 186 82.3
SalBow3G1683 Salvia bowleyana HOM05D003581 ORTHO05D004332 1.6e-83 313.9 188 79.8
Ciclev10019435m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.1e-83 313.5 187 81.8
TWI15G0618 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 2.1e-83 313.5 187 81.3
CiPaw.02G100300 Carya illinoinensis HOM05D003581 ORTHO05D004332 1.4e-82 310.8 187 81.8
Dinv33206 Davidia involucrata HOM05D003581 ORTHO05D004332 1.4e-82 310.8 187 79.1
Duzib212G0814 Durio zibethinus HOM05D003581 ORTHO05D004332 5.2e-82 308.9 196 78.6
QL10p055884 Quercus lobata HOM05D003581 ORTHO05D004332 1.2e-81 307.8 187 81.8
TWI63G1729 Tripterygium wilfordii HOM05D003581 ORTHO05D004332 1.2e-81 307.8 187 80.2
Gohir.A02G009800 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.5e-81 307.4 187 79.7
MSTRG.4302 Avicennia marina HOM05D003581 ORTHO05D004332 2.6e-81 306.6 187 78.1
Oeu015721.1 Olea europaea HOM05D003581 ORTHO05D004332 2.6e-81 306.6 187 79.1
Haze_01360 Corylus avellana HOM05D003581 ORTHO05D004332 3.4e-81 306.2 187 80.2
Cfa015269 Carpinus fangiana HOM05D003581 ORTHO05D004332 5.8e-81 305.4 187 79.7
Migut.G01176 Erythranthe guttata HOM05D003581 ORTHO05D004332 1.3e-80 304.3 187 79.1
Glyma.07G207700 Glycine max HOM05D003581 ORTHO05D004332 2.2e-80 303.5 187 77.5
Lj6A223G7 Lonicera japonica HOM05D003581 ORTHO05D004332 2.2e-80 303.5 236 65.3
Manes.11G129000 Manihot esculenta HOM05D003581 ORTHO05D004332 4.9e-80 302.4 187 81.3
TAR362G0335 Trochodendron aralioides HOM05D003581 ORTHO05D004332 4.9e-80 302.4 187 78.1
Gohir.D02G010000 Gossypium hirsutum HOM05D003581 ORTHO05D004332 6.4e-80 302.0 187 79.1
Gorai.005G012300 Gossypium raimondii HOM05D003581 ORTHO05D004332 6.4e-80 302.0 187 79.1
Nn7g37551 Nelumbo nucifera HOM05D003581 ORTHO05D004332 1.1e-79 301.2 187 77.0
Lj6A212G5 Lonicera japonica HOM05D003581 ORTHO05D004332 1.4e-79 300.8 187 77.0
Atru.chr4.1420 Acer truncatum HOM05D003581 ORTHO05D004332 2.4e-79 300.1 187 78.1
Ciclev10019423m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.4e-79 300.1 187 79.7
Prupe.1G207300 Prunus persica HOM05D003581 ORTHO05D004332 2.4e-79 300.1 187 77.5
Cc03_g14130 Coffea canephora HOM05D003581 ORTHO05D004332 5.4e-79 298.9 187 75.9
Dinv07056 Davidia involucrata HOM05D003581 ORTHO05D004332 7.1e-79 298.5 187 75.9
Hma1.2p1_0108F.1_g051730 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 7.1e-79 298.5 187 77.5
RcHm_v2.0_Chr5g0060731 Rosa chinensis HOM05D003581 ORTHO05D004332 1.2e-78 297.7 187 76.5
Ciclev10019432m.g Citrus clementina HOM05D003581 ORTHO05D004332 1.6e-78 297.4 187 78.6
Glyma.02G137700 Glycine max HOM05D003581 ORTHO05D004332 2.1e-78 297.0 187 75.9
FvH4_3g33330 Fragaria vesca HOM05D003581 ORTHO05D004332 2.7e-78 296.6 187 77.5
FAN11G3774 Fragaria x ananassa HOM05D003581 ORTHO05D004332 2.7e-78 296.6 187 77.5
PGR042G0246 Punica granatum HOM05D003581 ORTHO05D004332 6.0e-78 295.4 187 77.5
Sc19g0002230 Simmondsia chinensis HOM05D003581 ORTHO05D004332 6.0e-78 295.4 187 74.9
FAN21G3444 Fragaria x ananassa HOM05D003581 ORTHO05D004332 7.8e-78 295.0 187 77.0
Peaxi162Scf00075g01320 Petunia axillaris HOM05D003581 ORTHO05D004332 1.0e-77 294.7 187 74.9
FAN25G3295 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.3e-77 294.3 187 76.5
arahy.Tifrunner.gnm1.ann1.CYNM9M Arachis hypogaea HOM05D003581 ORTHO05D004332 1.7e-77 293.9 187 75.4
arahy.Tifrunner.gnm1.ann1.S0PZLW Arachis hypogaea HOM05D003581 ORTHO05D004332 1.7e-77 293.9 187 75.4
Eucgr.L00003 Eucalyptus grandis HOM05D003581 ORTHO05D004332 1.7e-77 293.9 187 75.4
Gohir.D10G123100 Gossypium hirsutum HOM05D003581 ORTHO05D004332 1.7e-77 293.9 187 75.4
Gorai.011G135600 Gossypium raimondii HOM05D003581 ORTHO05D004332 1.7e-77 293.9 187 75.4
FAN16G1590 Fragaria x ananassa HOM05D003581 ORTHO05D004332 6.6e-77 292.0 187 76.5
Lalb_Chr05g0218901 Lupinus albus HOM05D003581 ORTHO05D004332 1.5e-76 290.8 187 75.4
Ca_18637_v3 Cicer arietinum L. HOM05D003581 ORTHO05D004332 2.5e-76 290.0 187 74.9
Aqoxy2G04153 Aquilegia oxysepala HOM05D003581 ORTHO05D004332 3.3e-76 289.7 187 73.8
Lj4g0012121 Lotus japonicus HOM05D003581 ORTHO05D004332 3.3e-76 289.7 187 74.9
MBI11_g16039_MAGBIO Magnolia biondii HOM05D003581 ORTHO05D004332 3.3e-76 289.7 189 74.6
Oeu016612.2 Olea europaea HOM05D003581 ORTHO05D004332 7.3e-76 288.5 187 73.8
Phvul.003G296800 Phaseolus vulgaris HOM05D003581 ORTHO05D004332 1.2e-75 287.7 187 74.9
Rhsim02G0084300 Rhododendron simsii HOM05D003581 ORTHO05D004332 1.2e-75 287.7 187 73.3
TPR.G23544 Trifolium pratense HOM05D003581 ORTHO05D004332 1.2e-75 287.7 187 75.4
GSVIVG01038144001 Vitis vinifera HOM05D003581 ORTHO05D004332 1.2e-75 287.7 187 75.4
Nitab4.5_0000013g0560 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.6e-75 287.3 187 73.3
PSO017G3340 Papaver somniferum HOM05D003581 ORTHO05D004332 1.6e-75 287.3 187 74.9
VMungo0251G3355 Vigna mungo HOM05D003581 ORTHO05D004332 1.6e-75 287.3 187 74.3
Medtr4g087320 Medicago truncatula HOM05D003581 ORTHO05D004332 2.1e-75 287.0 187 74.3
PSO837G0047 Papaver somniferum HOM05D003581 ORTHO05D004332 2.1e-75 287.0 187 74.9
Sabra13G0106000 Salix brachista HOM05D003581 ORTHO05D004332 2.1e-75 287.0 238 65.1
MD00G1149500 Malus domestica HOM05D003581 ORTHO05D004332 3.6e-75 286.2 187 74.3
unitig_747.g21694 Utricularia gibba HOM05D003581 ORTHO05D004332 8.1e-75 285.0 187 71.7
Nitab4.5_0001411g0030 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.1e-74 284.6 187 72.7
Psat7g120160 Pisum sativum HOM05D003581 ORTHO05D004332 1.1e-74 284.6 187 74.3
CSS0022611 Camellia sinensis var. sinensis HOM05D003581 ORTHO05D004332 2.4e-74 283.5 187 72.7
BcaB02g07454 Brassica carinata HOM05D003581 ORTHO05D004332 3.1e-74 283.1 188 74.5
Hma1.2p1_0150F.1_g066840 Hydrangea macrophylla HOM05D003581 ORTHO05D004332 6.9e-74 282.0 188 74.5
DCAR_005472 Daucus carota HOM05D003581 ORTHO05D004332 1.2e-73 281.2 187 73.8
Nitab4.5_0001586g0020 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.2e-73 281.2 187 72.7
Peaxi162Scf00568g00013 Petunia axillaris HOM05D003581 ORTHO05D004332 1.2e-73 281.2 187 73.3
BcaC08g44999 Brassica carinata HOM05D003581 ORTHO05D004332 1.5e-73 280.8 188 73.9
BolC6t37794H Brassica oleracea HOM05D003581 ORTHO05D004332 1.5e-73 280.8 188 73.9
CDE02G2835 Ceratophyllum demersum HOM05D003581 ORTHO05D004332 1.5e-73 280.8 187 71.7
Sopen08g005080 Solanum pennellii HOM05D003581 ORTHO05D004332 2.0e-73 280.4 187 71.7
Lalb_Chr16g0384431 Lupinus albus HOM05D003581 ORTHO05D004332 3.4e-73 279.6 187 72.2
BraA07t30118Z Brassica rapa HOM05D003581 ORTHO05D004332 7.6e-73 278.5 188 73.4
HanXRQChr02g0059151 Helianthus annuus HOM05D003581 ORTHO05D004332 9.9e-73 278.1 187 72.7
Oeu050335.1 Olea europaea HOM05D003581 ORTHO05D004332 9.9e-73 278.1 200 71.0
Solyc08g014150.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 9.9e-73 278.1 187 71.1
Aa31LG10G13950 Aethionema arabicum HOM05D003581 ORTHO05D004332 2.9e-72 276.6 188 71.8
BcaC07g40497 Brassica carinata HOM05D003581 ORTHO05D004332 4.9e-72 275.8 189 73.0
C08p34660 Brassica napus HOM05D003581 ORTHO05D004332 4.9e-72 275.8 189 73.0
BolC8t51068H Brassica oleracea HOM05D003581 ORTHO05D004332 4.9e-72 275.8 189 73.0
Gohir.A10G143900 Gossypium hirsutum HOM05D003581 ORTHO05D004332 4.9e-72 275.8 187 72.2
CARHR170030 Cardamine hirsuta HOM05D003581 ORTHO05D004332 6.4e-72 275.4 188 72.9
AL5G41730 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 8.4e-72 275.0 188 72.9
Peaxi162Scf00180g00011 Petunia axillaris HOM05D003581 ORTHO05D004332 1.1e-71 274.6 187 72.7
PGSC0003DMG400014635 Solanum tuberosum HOM05D003581 ORTHO05D004332 1.4e-71 274.2 181 72.4
AT3G59660 Arabidopsis thaliana HOM05D003581 ORTHO05D004332 1.9e-71 273.9 188 72.3
Thhalv10005851m.g Eutrema salsugineum HOM05D003581 ORTHO05D004332 1.9e-71 273.9 188 72.3
Sed0001548 Sechium edule HOM05D003581 ORTHO05D004332 1.9e-71 273.9 188 71.3
Carub.0005s2638 Capsella rubella HOM05D003581 ORTHO05D004332 2.4e-71 273.5 188 71.8
CsaV3_4G002790 Cucumis sativus L. HOM05D003581 ORTHO05D004332 2.4e-71 273.5 187 70.1
Lju470A15G16 Lonicera japonica HOM05D003581 ORTHO05D004332 3.2e-71 273.1 187 70.6
Sp5g03520 Schrenkiella parvula HOM05D003581 ORTHO05D004332 4.2e-71 272.7 188 72.3
A09p51980 Brassica napus HOM05D003581 ORTHO05D004332 9.3e-71 271.6 189 72.0
BraA09t40631Z Brassica rapa HOM05D003581 ORTHO05D004332 1.2e-70 271.2 189 72.0
MELO3C017762.2 Cucumis melo HOM05D003581 ORTHO05D004332 1.2e-70 271.2 189 70.4
Nitab4.5_0024222g0010 Nicotiana tabacum HOM05D003581 ORTHO05D004332 1.2e-70 271.2 197 68.5
Sopen06g018480 Solanum pennellii HOM05D003581 ORTHO05D004332 2.7e-70 270.0 187 70.6
Os09g0516900 Oryza sativa ssp. japonica HOM05D003581 ORTHO05D004332 4.6e-70 269.2 187 66.8
CAN.G136.12 Capsicum annuum HOM05D003581 ORTHO05D004332 6.0e-70 268.9 188 70.2
ATR0743G267 Amborella trichopoda HOM05D003581 ORTHO05D004332 7.8e-70 268.5 187 67.4
HanXRQChr11g0343141 Helianthus annuus HOM05D003581 ORTHO05D004332 1.0e-69 268.1 187 70.1
HPP92_012802 Vanilla planifolia HOM05D003581 ORTHO05D004332 1.3e-69 267.7 187 69.5
Lsat_1_v5_gn_1_74961 Lactuca sativa HOM05D003581 ORTHO05D004332 1.7e-69 267.3 187 70.1
EL10Ac3g06090 Beta vulgaris HOM05D003581 ORTHO05D004332 3.0e-69 266.5 219 61.2
Zm00001eb318620 Zea mays HOM05D003581 ORTHO05D004332 5.1e-69 265.8 187 65.8
ECA248G0552 Erigeron canadensis HOM05D003581 ORTHO05D004332 8.7e-69 265.0 187 69.5
SGA_v2.0_scaffold283G46956 Striga asiatica HOM05D003581 ORTHO05D004332 8.7e-69 265.0 169 74.6
C06p26310 Brassica napus HOM05D003581 ORTHO05D004332 1.1e-68 264.6 214 65.0
Lsat_1_v5_gn_6_65760 Lactuca sativa HOM05D003581 ORTHO05D004332 1.1e-68 264.6 187 70.1
Solyc06g053420.4 Solanum lycopersicum HOM05D003581 ORTHO05D004332 1.1e-68 264.6 187 69.5
A07p24730 Brassica napus HOM05D003581 ORTHO05D004332 1.5e-68 264.2 214 64.5
Zm00001eb102830 Zea mays HOM05D003581 ORTHO05D004332 5.6e-68 262.3 187 65.8
Sed0016715 Sechium edule HOM05D003581 ORTHO05D004332 7.3e-68 261.9 187 69.0
AUR62002403 Chenopodium quinoa HOM05D003581 ORTHO05D004332 9.6e-68 261.5 187 67.9
AUR62023792 Chenopodium quinoa HOM05D003581 ORTHO05D004332 1.6e-67 260.8 189 67.7
THA.LOC104817844 Tarenaya hassleriana HOM05D003581 ORTHO05D004332 1.6e-67 260.8 187 69.5
Migut.N03065 Erythranthe guttata HOM05D003581 ORTHO05D004332 8.1e-67 258.5 249 53.4
ClCG07G015200 Citrullus lanatus HOM05D003581 ORTHO05D004332 7.6e-65 251.9 193 64.8
CiPaw.01G170500 Carya illinoinensis HOM05D003581 ORTHO05D004332 9.9e-65 251.5 158 77.2
Oeu015722.1 Olea europaea HOM05D003581 ORTHO05D004332 2.9e-64 250.0 151 78.8
Ciclev10020241m.g Citrus clementina HOM05D003581 ORTHO05D004332 2.3e-61 240.4 165 70.3
Actinidia02585 Actinidia chinensis HOM05D003581 ORTHO05D004332 8.7e-61 238.4 187 63.1
SEGI_00445 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 1.1e-60 238.0 193 60.1
MSTRG.22033 Avicennia marina HOM05D003581 ORTHO05D004332 5.6e-60 235.7 221 56.6
MSTRG.9734 Avicennia marina HOM05D003581 ORTHO05D004332 6.2e-59 232.3 187 64.7
arahy.Tifrunner.gnm1.ann1.QCV2L4 Arachis hypogaea HOM05D003581 ORTHO05D004332 5.3e-58 229.2 187 61.0
DCAR_027523 Daucus carota HOM05D003581 ORTHO05D004332 1.5e-57 227.6 169 65.7
Gohir.D02G010400 Gossypium hirsutum HOM05D000101 ORTHO05D002559 5.5e-55 219.2 128 78.9
SalBow6G2049 Salvia bowleyana HOM05D003581 ORTHO05D004332 9.3e-55 218.4 226 51.3
FAN21G2715 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.3e-53 214.5 189 61.4
AagrBONN_evm.TU.Sc2ySwM_228.999 Anthoceros agrestis HOM05D003581 ORTHO05D004332 5.3e-50 202.6 187 54.0
Zm00001eb246670 Zea mays HOM05D003581 ORTHO05D004332 2.0e-49 200.7 188 52.7
arahy.Tifrunner.gnm1.ann1.KL9X3Y Arachis hypogaea HOM05D003581 ORTHO05D004332 1.9e-47 194.1 192 54.2
vmacro00696 Vaccinium macrocarpon HOM05D003581 ORTHO05D004332 3.2e-47 193.4 170 55.9
Mapoly0029s0087 Marchantia polymorpha HOM05D003581 ORTHO05D004332 1.6e-46 191.0 193 48.7
Pp3c15_5890 Physcomitrium patens HOM05D003581 ORTHO05D004332 1.0e-45 188.3 190 50.0
SMO358G0294 Selaginella moellendorffii HOM05D003581 ORTHO05D004332 1.3e-43 181.4 193 50.3
Rhsim09G0009900 Rhododendron simsii HOM05D003581 ORTHO05D004332 1.1e-42 178.3 201 50.2
Actinidia28980 Actinidia chinensis HOM05D003581 ORTHO05D004332 5.3e-42 176.0 140 62.1
CBR_g46857 Chara braunii HOM05D003581 ORTHO05D004332 1.2e-41 174.9 210 47.1
CAN.G759.9 Capsicum annuum HOM05D003581 ORTHO05D004332 2.5e-39 167.2 118 69.5
Duzib151G0128 Durio zibethinus HOM05D003581 ORTHO05D004332 4.2e-39 166.4 187 50.3
Actinidia11443 Actinidia chinensis HOM05D003581 ORTHO05D004332 1.6e-38 164.5 187 48.7
FAN08G0117 Fragaria x ananassa HOM05D003581 ORTHO05D004332 7.9e-38 162.2 151 58.3
FAN03G1615 Fragaria x ananassa HOM05D003581 ORTHO05D004332 1.8e-37 161.0 150 58.7
Ah.13g073460 Amaranthus hybridus HOM05D003581 ORTHO05D004332 9.7e-36 155.2 210 44.3
Hund03203 Selenicereus undatus HOM05D003581 ORTHO05D004332 6.5e-32 142.5 186 44.1
FAN02G4325 Fragaria x ananassa HOM05D003581 ORTHO05D004332 5.1e-29 132.9 67 86.6
CAN.G759.10 Capsicum annuum HOM05D003581 ORTHO05D004332 1.8e-26 124.4 66 80.3
SEGI_09569 Sequoiadendron giganteum HOM05D003581 ORTHO05D004332 6.9e-26 122.5 68 76.5
CSS0011136 Camellia sinensis var. sinensis HOM05D004284 ORTHO05D003107 3.5e-17 93.6 158 39.9
Glyma.07G207902 Glycine max HOM05D003581 ORTHO05D004332 1.5e-15 88.2 109 51.4
AL5G41680 Arabidopsis lyrata HOM05D003581 ORTHO05D004332 1.5e-12 78.2 42 81.0
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 1.8e-10 71.2 161 31.7
Cpa.g.sc109.46 Carica papaya HOM05D000003 ORTHO05D000004 2.0e-09 67.8 74 51.4
VMungo0251G0270 Vigna mungo HOM05D003581 ORTHO05D004332 2.0e-09 67.8 116 39.7
PRCOL_00001515 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 1.9e-07 61.2 160 25.0
HanXRQChr15g0474821 Helianthus annuus HOM05D003581 ORTHO05D004332 7.2e-07 59.3 47 59.6
MELO3C025672.2 Cucumis melo HOM05D003581 ORTHO05D004332 1.6e-06 58.2 36 72.2
Cpa.g.sc101.26 Carica papaya HOM05D007218 ORTHO05D008812 2.7e-06 57.4 68 45.6
MELO3C026654.2 Cucumis melo HOM05D003581 ORTHO05D004332 2.7e-06 57.4 36 72.2
Glyma.02G137500 Glycine max HOM05D003581 ORTHO05D004332 6.1e-06 56.2 78 48.7
HanXRQChr08g0224081 Helianthus annuus HOM05D003581 ORTHO05D004332 8.0e-06 55.8 59 52.5


User provided reference genes

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