Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 4.4e-127 458.0 234 100.0
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.2e-69 265.8 231 62.8
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.0e-67 259.2 230 60.4
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 6.7e-67 258.1 227 59.9
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.3e-66 255.8 229 58.1
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 8.1e-65 251.1 218 59.6
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.8e-63 245.0 155 76.8
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.3e-62 243.8 191 66.5
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.9e-61 240.0 196 61.7
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.9e-61 240.0 223 59.2
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 5.5e-61 238.4 226 55.8
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.2e-60 237.3 198 65.2
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.6e-60 236.9 225 58.2
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.0e-59 234.2 199 63.3
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 3.9e-59 232.3 156 74.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 5.1e-59 231.9 168 67.9
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 6.7e-59 231.5 221 57.9
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.1e-58 230.7 196 59.7
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.9e-58 229.9 200 63.0
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.6e-57 226.9 198 60.1
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.6e-57 226.9 201 58.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 2.8e-57 226.1 186 63.4
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 3.7e-57 225.7 228 55.7
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 6.3e-57 224.9 155 71.0
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.1e-56 224.2 146 76.0
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.4e-56 223.8 231 54.1
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 1.8e-56 223.4 199 59.3
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 4.1e-56 222.2 160 70.6
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 5.3e-56 221.9 202 58.4
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 6.9e-56 221.5 165 66.7
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 9.0e-56 221.1 228 53.1
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 1.2e-55 220.7 202 56.9
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 2.0e-55 219.9 223 53.8
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 3.4e-55 219.2 241 53.1
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 5.9e-55 218.4 183 61.7
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.9e-53 213.4 155 65.2
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 7.2e-53 211.5 158 63.9
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 9.3e-53 211.1 161 67.1
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 2.7e-52 209.5 155 64.5
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 2.3e-51 206.5 150 66.0
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.3e-51 206.5 199 54.8
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 1.3e-49 200.7 163 64.4
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.4e-48 196.4 224 48.7
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 2.0e-47 193.4 157 59.9
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.6e-47 193.0 178 56.2
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.3e-46 190.7 160 62.5
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.3e-46 190.7 184 55.4
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 5.0e-46 188.7 175 56.6
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.4e-45 187.2 161 59.6
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.9e-45 186.8 227 49.8
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 3.6e-44 182.6 162 56.8
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.4e-43 180.6 161 60.9
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.9e-43 179.1 215 46.0
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 6.7e-43 178.3 156 55.8
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.4e-42 174.9 199 51.8
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 9.7e-42 174.5 227 47.1
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 1.7e-41 173.7 126 70.6
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.2e-41 173.3 179 52.0
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.2e-41 173.3 156 57.1
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 2.8e-41 172.9 173 50.9
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 1.8e-40 170.2 186 48.4
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 2.4e-40 169.9 177 54.8
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 2.4e-40 169.9 162 54.9
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 4.1e-40 169.1 162 54.9
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 1.4e-35 154.1 153 54.2
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 3.9e-35 152.5 111 63.1
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 1.5e-34 150.6 98 74.5
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 4.8e-33 145.6 161 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 3.1e-32 142.9 150 50.0
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.6e-31 140.6 118 59.3
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 2.0e-31 140.2 118 59.3
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.6e-31 139.8 155 46.5
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 4.5e-31 139.0 196 45.4
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 5.9e-31 138.7 167 48.5
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.1e-29 134.4 157 44.6
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.2e-28 131.0 88 73.9
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 2.1e-28 130.2 143 47.6
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 8.8e-27 124.8 96 62.5
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 1.7e-25 120.6 116 52.6
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 1.4e-24 117.5 116 51.7
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 1.8e-24 117.1 78 70.5
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.0e-23 113.6 165 40.6
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.7e-23 113.2 125 48.8
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.5e-23 112.5 125 48.8
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.3e-22 110.9 102 60.8
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 1.7e-22 110.5 224 34.4
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 2.2e-22 110.2 153 40.5
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 5.0e-22 109.0 150 39.3
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 8.5e-22 108.2 153 41.2
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 8.5e-22 108.2 152 40.8
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 1.1e-21 107.8 125 44.0
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 1.5e-21 107.5 144 40.3
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.5e-21 107.5 121 42.1
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 2.5e-21 106.7 153 37.3
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 2.5e-21 106.7 269 28.6
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 2.5e-21 106.7 189 33.9
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 3.2e-21 106.3 119 50.4
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 3.2e-21 106.3 120 45.0
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.2e-21 105.9 130 41.5
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.2e-21 105.9 130 41.5
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 5.5e-21 105.5 154 37.7
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 7.2e-21 105.1 158 34.8
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 1.2e-20 104.4 146 38.4
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.2e-20 104.4 127 41.7
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.6e-20 104.0 153 35.9
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 2.1e-20 103.6 127 44.1
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 2.1e-20 103.6 149 37.6
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 2.1e-20 103.6 118 43.2
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 2.7e-20 103.2 173 34.7
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.7e-20 103.2 146 36.3
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 2.7e-20 103.2 156 38.5
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 3.6e-20 102.8 153 40.5
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 4.7e-20 102.4 152 36.8
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 4.7e-20 102.4 125 47.2
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 6.1e-20 102.1 127 39.4
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 8.0e-20 101.7 148 39.9
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 8.0e-20 101.7 156 39.1
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 8.0e-20 101.7 135 39.3
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.0e-19 101.3 158 38.6
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 1.4e-19 100.9 121 44.6
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 1.4e-19 100.9 155 36.1
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 1.8e-19 100.5 121 42.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.8e-19 100.5 154 35.7
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 2.3e-19 100.1 173 36.4
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 2.3e-19 100.1 171 37.4
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 3.0e-19 99.8 157 36.3
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.0e-19 99.8 152 38.2
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 4.0e-19 99.4 157 36.3
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.2e-18 97.8 126 39.7
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.2e-18 97.8 106 45.3
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.5e-18 97.4 141 33.3
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.5e-18 97.4 146 36.3
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.5e-18 97.4 124 38.7
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.5e-18 97.4 123 40.7
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 1.5e-18 97.4 115 43.5
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.0e-18 97.1 156 36.5
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.0e-18 97.1 156 36.5
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.0e-18 97.1 156 37.2
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 2.6e-18 96.7 142 38.0
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.6e-18 96.7 169 34.3
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 3.4e-18 96.3 113 42.5
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 4.4e-18 95.9 137 38.0
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 7.5e-18 95.1 147 35.4
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 7.5e-18 95.1 162 34.6
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 9.8e-18 94.7 147 34.7
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 1.7e-17 94.0 169 32.5
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.2e-17 93.6 143 34.3
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 2.2e-17 93.6 72 68.1
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 2.2e-17 93.6 72 68.1
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 6.3e-17 92.0 123 40.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 3.1e-16 89.7 156 32.7
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 4.1e-16 89.4 135 34.8
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.4e-16 89.0 185 31.9
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 9.1e-16 88.2 105 42.9
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.6e-15 87.4 155 33.5
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.5e-15 86.3 257 28.8
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 7.7e-15 85.1 153 33.3
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 1.1e-13 81.3 118 38.1
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 1.1e-13 81.3 87 46.0
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 2.5e-13 80.1 141 34.0
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 5.5e-13 79.0 167 34.7
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 5.5e-13 79.0 134 35.8
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 1.5e-10 70.9 178 27.5
Haze_01371 Corylus avellana HOM05D003796 ORTHO05D004486 7.5e-10 68.6 113 43.4
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 5.4e-08 62.4 107 34.6
FvH4_3g24770 Fragaria vesca HOM05D003796 ORTHO05D004486 2.7e-07 60.1 151 33.8
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 3.5e-07 59.7 75 41.3
CSS0019445 Camellia sinensis var. sinensis HOM05D055008 ORTHO05D043295 4.5e-07 59.3 91 37.4
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 1.3e-06 57.8 73 42.5
CSS0039071 Camellia sinensis var. sinensis HOM05D055008 ORTHO05D043295 1.7e-06 57.4 72 41.7


User provided reference genes

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