Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 2.4e-48 195.3 106 100.0
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.4e-40 169.5 106 84.9
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 1.8e-40 169.1 106 84.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 4.1e-40 167.9 104 84.6
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 4.1e-40 167.9 104 85.6
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 7.0e-40 167.2 104 83.7
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 1.2e-39 166.4 104 83.7
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 2.7e-39 165.2 105 81.0
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 4.5e-39 164.5 106 82.1
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 5.9e-39 164.1 106 81.1
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 7.8e-39 163.7 106 81.1
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 1.0e-38 163.3 106 82.1
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 1.0e-38 163.3 106 80.2
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 1.3e-38 162.9 106 79.2
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.3e-38 162.2 106 83.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.3e-38 162.2 106 83.0
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.3e-38 162.2 106 83.0
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 2.3e-38 162.2 104 78.8
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 6.6e-38 160.6 106 79.2
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 8.6e-38 160.2 106 78.3
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-37 159.5 106 78.3
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.5e-37 159.5 106 81.1
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.5e-37 159.5 106 81.1
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 1.5e-37 159.5 105 80.0
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.5e-37 158.7 106 78.3
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.5e-37 158.7 106 76.4
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 3.3e-37 158.3 106 77.4
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 3.3e-37 158.3 106 76.4
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 4.3e-37 157.9 106 83.0
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 4.3e-37 157.9 106 81.1
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 7.3e-37 157.1 105 78.1
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 9.5e-37 156.8 106 77.4
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 2.8e-36 155.2 106 74.5
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 8.0e-36 153.7 105 77.1
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 8.0e-36 153.7 105 77.1
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 8.0e-36 153.7 94 81.9
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.0e-35 153.3 101 78.2
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 1.4e-35 152.9 103 78.6
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 1.8e-35 152.5 105 76.2
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 3.0e-35 151.8 105 75.2
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 3.0e-35 151.8 106 76.4
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 3.0e-35 151.8 106 77.4
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 4.0e-35 151.4 106 73.6
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 4.0e-35 151.4 103 75.7
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 4.0e-35 151.4 91 83.5
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 6.8e-35 150.6 106 76.4
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 8.9e-35 150.2 103 74.8
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 8.9e-35 150.2 103 74.8
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 8.9e-35 150.2 103 74.8
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-34 149.8 96 79.2
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-34 149.8 103 75.7
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 1.2e-34 149.8 108 72.2
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-34 149.8 101 76.2
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.5e-34 149.4 104 75.0
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 2.0e-34 149.1 99 76.8
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 2.6e-34 148.7 99 75.8
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.6e-34 148.7 103 74.8
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.6e-34 148.7 103 74.8
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 3.4e-34 148.3 94 79.8
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 3.4e-34 148.3 105 75.2
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 4.4e-34 147.9 103 78.6
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 5.7e-34 147.5 105 71.4
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 5.7e-34 147.5 101 74.3
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 5.7e-34 147.5 110 71.8
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 5.7e-34 147.5 103 73.8
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 5.7e-34 147.5 103 74.8
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 7.5e-34 147.1 105 74.3
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 1.3e-33 146.4 107 74.8
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.7e-33 146.0 104 72.1
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.7e-33 146.0 104 72.1
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 1.7e-33 146.0 106 73.6
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 2.2e-33 145.6 103 73.8
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.9e-33 145.2 107 74.8
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.9e-33 145.2 107 74.8
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 2.9e-33 145.2 90 78.9
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 4.9e-33 144.4 106 72.6
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 6.4e-33 144.1 101 72.3
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 8.3e-33 143.7 101 74.3
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 8.3e-33 143.7 102 73.5
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 1.4e-32 142.9 91 78.0
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.8e-32 142.5 86 82.6
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.8e-32 142.5 106 74.5
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 2.4e-32 142.1 96 75.0
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 4.1e-32 141.4 92 77.2
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 5.4e-32 141.0 92 76.1
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 5.4e-32 141.0 102 70.6
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 5.4e-32 141.0 85 82.4
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-32 141.0 85 82.4
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-32 141.0 85 82.4
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-32 141.0 85 82.4
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.4e-32 141.0 85 82.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 5.4e-32 141.0 85 82.4
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 5.4e-32 141.0 97 69.1
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.6e-31 139.4 106 72.6
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.7e-31 138.7 86 77.9
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 2.7e-31 138.7 101 68.3
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 2.7e-31 138.7 103 69.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.3e-30 136.3 105 68.6
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 1.3e-30 136.3 105 68.6
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 1.7e-30 136.0 90 75.6
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 1.7e-30 136.0 105 68.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 1.7e-30 136.0 105 68.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 2.3e-30 135.6 105 68.6
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 3.0e-30 135.2 102 68.6
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 5.0e-30 134.4 101 68.3
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 1.1e-29 133.3 106 68.9
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.1e-29 133.3 105 66.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.1e-29 133.3 100 71.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 1.5e-29 132.9 105 66.7
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 1.9e-29 132.5 102 68.6
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 2.5e-29 132.1 104 67.3
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 2.5e-29 132.1 105 69.5
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 7.3e-29 130.6 113 62.8
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.6e-28 129.4 89 75.3
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 2.1e-28 129.0 105 65.7
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 1.8e-27 125.9 105 63.8
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 2.3e-27 125.6 106 63.2
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 3.1e-27 125.2 94 64.9
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 1.2e-26 123.2 105 66.7
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 1.2e-26 123.2 82 74.4
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.2e-26 123.2 85 75.3
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 2.0e-26 122.5 99 66.7
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 9.8e-26 120.2 106 66.0
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.4e-24 116.3 77 76.6
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.4e-24 116.3 77 76.6
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 7.3e-21 104.0 88 59.1
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 3.1e-19 98.6 102 53.9
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 3.4e-18 95.1 96 50.0
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 2.2e-17 92.4 55 78.2
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.6e-15 84.7 87 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 6.6e-14 80.9 102 47.1
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 6.6e-14 80.9 55 70.9
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 4.3e-13 78.2 50 84.0
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 5.6e-13 77.8 85 47.1
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 7.3e-13 77.4 55 67.3
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 7.3e-13 77.4 53 66.0
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.5e-10 69.7 49 61.2
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 1.5e-10 69.7 102 49.0
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.0e-10 69.3 62 59.7
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 2.6e-10 68.9 56 66.1
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 5.8e-10 67.8 68 58.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 9.9e-10 67.0 71 52.1
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 1.3e-09 66.6 53 75.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 1.3e-09 66.6 48 66.7
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 4.9e-09 64.7 44 75.0
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 6.4e-09 64.3 51 60.8
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 1.9e-08 62.8 59 55.9
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.2e-07 60.1 99 36.4
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.6e-07 59.7 42 64.3
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.3e-06 56.6 40 67.5
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.3e-06 56.6 88 39.8
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 8.6e-06 53.9 114 32.5


User provided reference genes

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