Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 0.0e+00 1293.5 672 100.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 8.1e-158 561.6 715 49.5
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 8.4e-155 551.6 697 48.1
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 1.9e-146 523.9 674 47.2
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 3.4e-140 503.1 730 44.5
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.7e-139 500.7 695 47.1
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 5.6e-135 485.7 696 44.8
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.1e-133 481.5 691 45.6
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 3.1e-133 479.9 697 44.5
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 3.2e-130 469.9 700 44.7
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 4.2e-130 469.5 690 44.5
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 5.1e-128 462.6 702 44.7
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 6.7e-128 462.2 623 46.1
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 1.3e-126 458.0 701 44.1
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 1.3e-126 458.0 682 43.5
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 8.2e-126 455.3 706 42.5
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.8e-125 454.1 704 43.3
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 6.9e-125 452.2 687 44.4
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 3.8e-123 446.4 694 43.4
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 8.5e-123 445.3 686 42.7
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 4.1e-117 426.4 588 45.9
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 4.1e-117 426.4 677 42.4
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.2e-116 424.9 712 41.2
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 1.5e-116 424.5 705 42.1
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 4.2e-114 416.4 631 42.5
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.6e-113 414.5 685 40.3
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 6.1e-113 412.5 700 39.4
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.0e-112 411.8 694 39.2
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 1.4e-112 411.4 683 40.6
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.8e-112 411.0 694 41.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 3.0e-112 410.2 685 40.0
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 3.0e-112 410.2 694 41.6
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 3.9e-112 409.8 704 39.2
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 5.1e-112 409.5 700 39.4
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 2.0e-111 407.5 694 40.1
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 2.6e-111 407.1 708 41.0
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 2.6e-111 407.1 716 40.2
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 1.3e-110 404.8 728 38.7
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.8e-110 402.9 707 39.0
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 4.8e-110 402.9 701 39.1
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 1.8e-109 401.0 718 39.3
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.1e-109 400.2 715 38.2
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 4.1e-109 399.8 692 38.4
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 2.5e-106 390.6 704 39.6
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 2.6e-103 380.6 648 38.3
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.7e-103 378.6 695 38.4
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.3e-102 378.3 716 38.7
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 4.1e-101 373.2 686 37.6
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 9.1e-101 372.1 624 40.2
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 3.5e-100 370.2 691 38.8
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.5e-100 370.2 514 46.3
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 5.9e-100 369.4 705 37.3
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 7.7e-100 369.0 695 38.8
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.0e-99 368.6 695 37.4
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 2.7e-97 360.5 689 37.4
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.2e-96 356.3 708 37.9
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 1.2e-95 355.1 702 36.9
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 8.2e-94 349.0 700 37.7
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 8.2e-94 349.0 700 37.7
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 9.1e-93 345.5 704 36.5
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 2.0e-92 344.4 682 37.0
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 4.5e-92 343.2 734 36.6
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 2.9e-91 340.5 691 36.5
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 3.8e-91 340.1 657 38.2
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 3.8e-91 340.1 657 37.9
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 5.0e-91 339.7 737 36.5
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.9e-90 337.8 407 48.2
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 6.1e-89 332.8 700 36.3
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.8e-88 328.9 706 34.6
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 6.3e-86 322.8 586 40.3
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.3e-83 315.1 699 35.2
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.8e-83 313.5 659 34.9
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.1e-82 312.0 695 35.5
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.6e-81 307.0 735 32.5
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.8e-80 304.7 628 37.1
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 9.8e-79 298.9 678 33.2
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 2.8e-78 297.4 717 33.9
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.4e-77 295.0 673 33.6
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.4e-77 295.0 546 37.9
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 7.0e-77 292.7 645 35.3
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 9.2e-77 292.4 548 38.3
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 5.0e-75 286.6 712 32.6
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.1e-74 285.4 630 36.7
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 8.9e-72 275.8 711 31.5
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 2.6e-71 274.2 716 33.2
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.3e-70 271.9 296 54.7
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.7e-70 271.6 592 36.3
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 3.2e-69 267.3 628 33.0
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.0e-68 264.6 635 34.2
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.0e-67 262.3 429 39.4
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 7.3e-66 256.1 707 32.2
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 7.3e-66 256.1 660 33.3
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 5.6e-58 229.9 682 30.8
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 1.2e-57 228.8 294 47.3
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.4e-56 225.3 424 37.7
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 4.4e-55 220.3 392 40.3
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 3.1e-48 197.6 706 27.3
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.9e-45 188.3 617 29.5
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.2e-45 186.0 346 40.2
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 3.0e-43 181.0 696 26.3
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 1.2e-39 169.1 332 36.7
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.2e-38 164.9 549 29.3
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 3.9e-35 154.1 387 32.6
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 4.2e-29 134.0 440 28.4
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.2e-28 132.5 413 26.9
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.0e-28 130.2 357 30.3
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 3.3e-26 124.4 365 26.3
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 2.4e-21 108.2 426 26.5
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 8.2e-17 93.2 447 24.8
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 4.5e-15 87.4 346 26.0
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.1e-13 82.8 88 46.6
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 7.9e-12 76.6 154 33.1
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 7.9e-12 76.6 116 41.4
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 2.5e-10 71.6 341 24.9
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.0e-06 59.7 292 27.7


User provided reference genes

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