Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.314 Carica papaya HOM05D000516 ORTHO05D000409 1.2e-62 243.0 123 100.0
CANSAT78G1650 Cannabis sativa HOM05D000516 ORTHO05D000409 1.4e-39 166.4 107 79.4
Manes.11G123600 Manihot esculenta HOM05D000516 ORTHO05D000409 1.2e-38 163.3 116 73.3
Potri.017G027400 Populus trichocarpa HOM05D000516 ORTHO05D000409 7.6e-38 160.6 106 77.4
Manes.04G039500 Manihot esculenta HOM05D000516 ORTHO05D000409 1.3e-37 159.8 105 77.1
THA.LOC104826197 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 1.3e-37 159.8 105 76.2
Cc00_g03570 Coffea canephora HOM05D000516 ORTHO05D000409 8.4e-37 157.1 107 78.5
Cfa015191 Carpinus fangiana HOM05D000516 ORTHO05D000409 7.1e-36 154.1 107 73.8
Sabra07G0106200 Salix brachista HOM05D000516 ORTHO05D000409 4.6e-35 151.4 106 74.5
Lj3g0002701 Lotus japonicus HOM05D000516 ORTHO05D000409 6.0e-35 151.0 111 70.3
Lalb_Chr14g0372521 Lupinus albus HOM05D000516 ORTHO05D000409 7.9e-35 150.6 109 73.4
CSS0010115 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 1.8e-34 149.4 107 74.8
CSS0047133 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 1.8e-34 149.4 107 74.8
Ciclev10020263m.g Citrus clementina HOM05D000516 ORTHO05D000409 6.7e-34 147.5 107 76.6
CiPaw.01G097700 Carya illinoinensis HOM05D000516 ORTHO05D000409 1.1e-33 146.7 107 70.1
FAN17G0288 Fragaria x ananassa HOM05D000516 ORTHO05D000409 3.3e-33 145.2 107 71.0
Lj3C0G3 Lonicera japonica HOM05D000516 ORTHO05D000409 7.4e-33 144.1 106 74.5
Lj3C32T11 Lonicera japonica HOM05D000516 ORTHO05D000409 7.4e-33 144.1 106 74.5
Haze_01463 Corylus avellana HOM05D000516 ORTHO05D000409 2.1e-32 142.5 107 70.1
MD13G1271600 Malus domestica HOM05D000516 ORTHO05D000409 3.7e-32 141.7 105 71.4
Oeu024476.1 Olea europaea HOM05D000516 ORTHO05D000409 4.8e-32 141.4 108 73.1
MELO3C006784.2 Cucumis melo HOM05D000516 ORTHO05D000409 6.2e-32 141.0 107 68.2
CsaV3_3G015850 Cucumis sativus L. HOM05D000516 ORTHO05D000409 6.2e-32 141.0 107 68.2
THA.LOC104800891 Tarenaya hassleriana HOM05D000516 ORTHO05D000409 6.2e-32 141.0 104 70.2
Prupe.1G197700 Prunus persica HOM05D000516 ORTHO05D000409 8.2e-32 140.6 107 70.1
Nitab4.5_0001586g0120 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.4e-31 139.8 107 72.9
CiPaw.02G052300 Carya illinoinensis HOM05D000516 ORTHO05D000409 1.8e-31 139.4 107 69.2
Glyma.15G029100 Glycine max HOM05D000516 ORTHO05D000409 2.4e-31 139.0 110 72.7
Phvul.005G153900 Phaseolus vulgaris HOM05D000516 ORTHO05D000409 2.4e-31 139.0 106 71.7
Sed0026015 Sechium edule HOM05D000516 ORTHO05D000409 2.4e-31 139.0 107 65.4
Atru.chr4.1259 Acer truncatum HOM05D000516 ORTHO05D000409 3.1e-31 138.7 106 72.6
arahy.Tifrunner.gnm1.ann1.NEJ4KC Arachis hypogaea HOM05D000516 ORTHO05D000409 3.1e-31 138.7 107 68.2
MD04G1043600 Malus domestica HOM05D000516 ORTHO05D000409 3.1e-31 138.7 107 69.2
Nn1g09710 Nelumbo nucifera HOM05D000516 ORTHO05D000409 5.3e-31 137.9 118 63.6
Aa31LG5G5580 Aethionema arabicum HOM05D000516 ORTHO05D000409 6.9e-31 137.5 105 68.6
Glyma.13G345200 Glycine max HOM05D000516 ORTHO05D000409 6.9e-31 137.5 111 72.1
Oeu034446.1 Olea europaea HOM05D000516 ORTHO05D000409 9.0e-31 137.1 106 72.6
VMungo1080G0868 Vigna mungo HOM05D000516 ORTHO05D000409 9.0e-31 137.1 106 69.8
arahy.Tifrunner.gnm1.ann1.H0KCEK Arachis hypogaea HOM05D000516 ORTHO05D000409 1.2e-30 136.7 107 67.3
SGA_v2.0_scaffold12G06168 Striga asiatica HOM05D000516 ORTHO05D000409 1.2e-30 136.7 106 67.9
SGA_v2.0_scaffold12G06169 Striga asiatica HOM05D000516 ORTHO05D000409 1.2e-30 136.7 106 68.9
MSTRG.9757 Avicennia marina HOM05D000516 ORTHO05D000409 1.5e-30 136.3 107 71.0
Peaxi162Scf00180g00131 Petunia axillaris HOM05D000516 ORTHO05D000409 2.0e-30 136.0 108 71.3
FAN07G1598 Fragaria x ananassa HOM05D000516 ORTHO05D000409 2.6e-30 135.6 107 68.2
FAN22G1058 Fragaria x ananassa HOM05D000516 ORTHO05D000409 4.5e-30 134.8 107 68.2
arahy.Tifrunner.gnm1.ann1.KX9K6H Arachis hypogaea HOM05D000516 ORTHO05D000409 1.3e-29 133.3 106 67.0
Ca_01250_v3 Cicer arietinum L. HOM05D000516 ORTHO05D000409 1.7e-29 132.9 105 70.5
FvH4_4g11161 Fragaria vesca HOM05D000516 ORTHO05D000409 1.7e-29 132.9 107 67.3
Migut.G01348 Erythranthe guttata HOM05D000516 ORTHO05D000409 2.2e-29 132.5 106 70.8
Nitab4.5_0006064g0050 Nicotiana tabacum HOM05D000516 ORTHO05D000409 2.2e-29 132.5 104 72.1
Sp1g04880 Schrenkiella parvula HOM05D000516 ORTHO05D000409 2.2e-29 132.5 106 69.8
Dinv44152 Davidia involucrata HOM05D000516 ORTHO05D000409 2.9e-29 132.1 105 69.5
Medtr2g099050 Medicago truncatula HOM05D000516 ORTHO05D000409 2.9e-29 132.1 105 68.6
CSS0040362 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 4.9e-29 131.3 107 67.3
MELO3C006794.2 Cucumis melo HOM05D000516 ORTHO05D000409 8.4e-29 130.6 107 64.5
arahy.Tifrunner.gnm1.ann1.SPP1BM Arachis hypogaea HOM05D000516 ORTHO05D000409 1.1e-28 130.2 106 65.1
DCAR_023944 Daucus carota HOM05D000516 ORTHO05D000409 1.1e-28 130.2 107 65.4
Nn7g37592 Nelumbo nucifera HOM05D000516 ORTHO05D000409 1.1e-28 130.2 107 66.4
Psat5g289760 Pisum sativum HOM05D000516 ORTHO05D000409 1.1e-28 130.2 105 71.4
TWI63G0668 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 1.1e-28 130.2 105 69.5
Sopen06g018410 Solanum pennellii HOM05D000516 ORTHO05D000409 1.4e-28 129.8 108 70.4
AT1G06070 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 1.9e-28 129.4 107 67.3
Solyc06g053350.3 Solanum lycopersicum HOM05D000516 ORTHO05D000409 1.9e-28 129.4 108 70.4
CSS0044485 Camellia sinensis var. sinensis HOM05D000516 ORTHO05D000409 2.5e-28 129.0 107 66.4
Dinv05075 Davidia involucrata HOM05D000516 ORTHO05D000409 2.5e-28 129.0 107 68.2
RcHm_v2.0_Chr2g0157441 Rosa chinensis HOM05D000516 ORTHO05D000409 2.5e-28 129.0 107 66.4
unitig_52.g17683 Utricularia gibba HOM05D000516 ORTHO05D000409 3.2e-28 128.6 107 65.4
DCAR_028432 Daucus carota HOM05D000516 ORTHO05D000409 4.2e-28 128.3 109 65.1
AL1G16020 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 5.5e-28 127.9 106 67.9
ClCG05G007170 Citrullus lanatus HOM05D000516 ORTHO05D000409 5.5e-28 127.9 107 63.6
Migut.E00835 Erythranthe guttata HOM05D000516 ORTHO05D000409 5.5e-28 127.9 106 68.9
TPR.G18831 Trifolium pratense HOM05D000516 ORTHO05D000409 7.1e-28 127.5 105 68.6
Lalb_Chr22g0352071 Lupinus albus HOM05D000516 ORTHO05D000409 9.3e-28 127.1 109 66.1
Sed0025172 Sechium edule HOM05D000516 ORTHO05D000409 2.1e-27 125.9 106 64.2
ClCG05G007200 Citrullus lanatus HOM05D000516 ORTHO05D000409 3.5e-27 125.2 107 61.7
Thhalv10007692m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 3.5e-27 125.2 106 67.9
Sed0013754 Sechium edule HOM05D000516 ORTHO05D000409 3.5e-27 125.2 106 64.2
Carub.0001s0540 Capsella rubella HOM05D000516 ORTHO05D000409 6.0e-27 124.4 106 67.0
CsaV3_3G015960 Cucumis sativus L. HOM05D000516 ORTHO05D000409 2.3e-26 122.5 110 61.8
RcHm_v2.0_Chr4g0407301 Rosa chinensis HOM05D000516 ORTHO05D000409 6.7e-26 120.9 107 63.6
Eucgr.A00102 Eucalyptus grandis HOM05D000516 ORTHO05D000409 8.7e-26 120.6 106 62.3
Eucgr.D00737 Eucalyptus grandis HOM05D000516 ORTHO05D000409 8.7e-26 120.6 106 62.3
Hma1.2p1_2415F.1_g321700 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 1.5e-25 119.8 107 62.6
Lalb_Chr19g0138381 Lupinus albus HOM05D000516 ORTHO05D000409 1.5e-25 119.8 105 62.9
unitig_0.g2400 Utricularia gibba HOM05D000516 ORTHO05D000409 2.5e-25 119.0 107 61.7
Lalb_Chr24g0396771 Lupinus albus HOM05D000516 ORTHO05D000409 7.4e-25 117.5 107 62.6
Lju682C3T1 Lonicera japonica HOM05D000516 ORTHO05D000409 9.7e-25 117.1 108 63.0
Oeu064765.1 Olea europaea HOM05D000516 ORTHO05D000409 9.7e-25 117.1 106 65.1
vmacro00634 Vaccinium macrocarpon HOM05D000516 ORTHO05D000409 9.7e-25 117.1 110 63.6
Peaxi162Scf00184g00416 Petunia axillaris HOM05D000516 ORTHO05D000409 1.3e-24 116.7 106 67.0
Nitab4.5_0000242g0160 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.6e-24 116.3 105 65.7
COL.COLO4_10080 Corchorus olitorius HOM05D000516 ORTHO05D000409 2.2e-24 115.9 108 62.0
CAN.G136.21 Capsicum annuum HOM05D000516 ORTHO05D000409 2.8e-24 115.5 107 66.4
Rhsim09G0022900 Rhododendron simsii HOM05D000516 ORTHO05D000409 2.8e-24 115.5 121 60.3
MELO3C033230.2 Cucumis melo HOM05D000516 ORTHO05D000409 8.2e-24 114.0 118 55.9
Thecc.04G175500 Theobroma cacao HOM05D000516 ORTHO05D000409 8.2e-24 114.0 108 60.2
Duzib151G0443 Durio zibethinus HOM05D000516 ORTHO05D000409 1.1e-23 113.6 108 60.2
Nitab4.5_0009616g0010 Nicotiana tabacum HOM05D000516 ORTHO05D000409 1.4e-23 113.2 105 63.8
C08p02380 Brassica napus HOM05D000516 ORTHO05D000409 1.8e-23 112.8 108 64.8
Lalb_Chr01g0003111 Lupinus albus HOM05D000516 ORTHO05D000409 1.8e-23 112.8 105 59.0
arahy.Tifrunner.gnm1.ann1.ZQ9YZD Arachis hypogaea HOM05D002696 ORTHO05D003940 2.4e-23 112.5 99 61.6
HanXRQChr09g0257911 Helianthus annuus HOM05D000516 ORTHO05D000409 3.1e-23 112.1 110 61.8
Sabra17G0016400 Salix brachista HOM05D000516 ORTHO05D000409 4.1e-23 111.7 106 61.3
QL10p050736 Quercus lobata HOM05D000516 ORTHO05D000409 5.3e-23 111.3 107 58.9
Actinidia27082 Actinidia chinensis HOM05D000516 ORTHO05D000409 1.5e-22 109.8 107 59.8
MSTRG.24575 Avicennia marina HOM05D000516 ORTHO05D000409 2.0e-22 109.4 107 64.5
BolC8t47030H Brassica oleracea HOM05D000516 ORTHO05D000409 2.6e-22 109.0 113 58.4
Lsat_1_v5_gn_5_71180 Lactuca sativa HOM05D000516 ORTHO05D000409 2.6e-22 109.0 106 63.2
CARHR005590 Cardamine hirsuta HOM05D000516 ORTHO05D000409 3.4e-22 108.6 106 61.3
TAR365G0470 Trochodendron aralioides HOM05D000516 ORTHO05D000409 7.6e-22 107.5 116 54.3
TWI38G0634 Tripterygium wilfordii HOM05D000516 ORTHO05D000409 1.0e-21 107.1 105 58.1
Gohir.D09G205600 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.3e-21 106.7 105 58.1
Gorai.006G229500 Gossypium raimondii HOM05D000516 ORTHO05D000409 1.3e-21 106.7 105 58.1
Gohir.A09G212100 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.7e-21 106.3 105 58.1
C05p04350 Brassica napus HOM05D000516 ORTHO05D000409 3.8e-21 105.1 107 57.9
BolC5t29209H Brassica oleracea HOM05D000516 ORTHO05D000409 3.8e-21 105.1 107 57.9
Gohir.A02G011700 Gossypium hirsutum HOM05D000516 ORTHO05D000409 3.8e-21 105.1 105 57.1
Gohir.D02G012500 Gossypium hirsutum HOM05D000516 ORTHO05D000409 3.8e-21 105.1 105 57.1
Gorai.005G015900 Gossypium raimondii HOM05D000516 ORTHO05D000409 3.8e-21 105.1 105 57.1
A10p04690 Brassica napus HOM05D000516 ORTHO05D000409 8.5e-21 104.0 105 59.0
BraA10t42733Z Brassica rapa HOM05D000516 ORTHO05D000409 8.5e-21 104.0 105 59.0
Gohir.A10G139500 Gossypium hirsutum HOM05D000516 ORTHO05D000409 1.1e-20 103.6 105 57.1
A08p36130 Brassica napus HOM05D000516 ORTHO05D000409 3.2e-20 102.1 106 60.4
Gohir.D10G127400 Gossypium hirsutum HOM05D000516 ORTHO05D000409 3.2e-20 102.1 105 56.2
Potri.007G130800 Populus trichocarpa HOM05D000516 ORTHO05D000409 3.2e-20 102.1 106 56.6
Gorai.011G140400 Gossypium raimondii HOM05D000516 ORTHO05D000409 4.2e-20 101.7 105 56.2
Lsat_1_v5_gn_2_38660 Lactuca sativa HOM05D000516 ORTHO05D000409 7.2e-20 100.9 106 56.6
CARHR125000 Cardamine hirsuta HOM05D000516 ORTHO05D000409 9.3e-20 100.5 107 55.1
ECA238G0676 Erigeron canadensis HOM05D000516 ORTHO05D000409 9.3e-20 100.5 109 53.2
Duzib268G0214 Durio zibethinus HOM05D000516 ORTHO05D000409 4.6e-19 98.2 105 58.1
Ah.07g202350 Amaranthus hybridus HOM05D000516 ORTHO05D000409 6.1e-19 97.8 106 58.5
AL4G26620 Arabidopsis lyrata HOM05D000516 ORTHO05D000409 1.8e-18 96.3 67 71.6
Ah.13g073800 Amaranthus hybridus HOM05D000516 ORTHO05D000409 3.0e-18 95.5 104 58.7
AT2G31370 Arabidopsis thaliana HOM05D000516 ORTHO05D000409 3.0e-18 95.5 108 54.6
BraA08t35520Z Brassica rapa HOM05D000516 ORTHO05D000409 5.1e-18 94.7 107 54.2
Hund03174 Selenicereus undatus HOM05D000516 ORTHO05D000409 5.1e-18 94.7 105 56.2
Sp4g13850 Schrenkiella parvula HOM05D000516 ORTHO05D000409 6.7e-18 94.4 107 52.3
Duzib212G0137 Durio zibethinus HOM05D000516 ORTHO05D000409 1.1e-17 93.6 108 51.9
Carub.0004s1269 Capsella rubella HOM05D000516 ORTHO05D000409 1.5e-17 93.2 107 52.3
Thhalv10016790m.g Eutrema salsugineum HOM05D000516 ORTHO05D000409 1.9e-17 92.8 74 64.9
PGR142G0622 Punica granatum HOM05D000516 ORTHO05D000409 4.3e-17 91.7 108 51.9
EL10Ac3g06006 Beta vulgaris HOM05D000516 ORTHO05D000409 5.7e-17 91.3 105 53.3
AUR62023846 Chenopodium quinoa HOM05D000516 ORTHO05D000409 3.7e-16 88.6 105 53.3
BcaB02g10387 Brassica carinata HOM05D000516 ORTHO05D000409 8.2e-16 87.4 67 64.2
AUR62002345 Chenopodium quinoa HOM05D000516 ORTHO05D000409 1.8e-15 86.3 105 52.4
Sc19g0002860 Simmondsia chinensis HOM05D000516 ORTHO05D000409 1.8e-15 86.3 105 49.5
Hund12413 Selenicereus undatus HOM05D000516 ORTHO05D000409 3.1e-15 85.5 105 52.4
TAR362G1027 Trochodendron aralioides HOM05D000516 ORTHO05D000409 6.9e-15 84.3 105 50.5
A05p14230 Brassica napus HOM05D000516 ORTHO05D000409 2.6e-14 82.4 73 57.5
BraA05t20354Z Brassica rapa HOM05D000516 ORTHO05D000409 2.6e-14 82.4 73 57.5
HanXRQChr01g0023491 Helianthus annuus HOM05D000516 ORTHO05D000409 4.5e-14 81.6 45 82.2
HPP92_002741 Vanilla planifolia HOM05D000516 ORTHO05D000409 4.5e-14 81.6 108 49.1
ECA248G0670 Erigeron canadensis HOM05D000516 ORTHO05D000409 5.9e-14 81.3 45 82.2
BcaB06g28552 Brassica carinata HOM05D000516 ORTHO05D000409 5.0e-13 78.2 77 54.5
CDE09G0718 Ceratophyllum demersum HOM05D000516 ORTHO05D000409 6.5e-13 77.8 89 52.8
PSO017G4163 Papaver somniferum HOM05D000516 ORTHO05D000409 1.4e-12 76.6 73 60.3
Phvul.011G053500 Phaseolus vulgaris HOM05D000516 ORTHO05D000409 1.9e-12 76.3 62 61.3
BcaC02g07979 Brassica carinata HOM05D000516 ORTHO05D000409 3.2e-12 75.5 73 54.8
C04p61150 Brassica napus HOM05D000516 ORTHO05D000409 3.2e-12 75.5 73 54.8
BolC4t27600H Brassica oleracea HOM05D000516 ORTHO05D000409 3.2e-12 75.5 73 54.8
SalBow6G0903 Salvia bowleyana HOM05D000516 ORTHO05D000409 4.2e-12 75.1 78 52.6
A04p24320 Brassica napus HOM05D000516 ORTHO05D000409 5.5e-12 74.7 81 54.3
BraA04t17951Z Brassica rapa HOM05D000516 ORTHO05D000409 5.5e-12 74.7 81 54.3
Glyma.12G051200 Glycine max HOM05D000516 ORTHO05D000409 1.2e-11 73.6 44 79.5
Lsat_1_v5_gn_1_77800 Lactuca sativa HOM05D000516 ORTHO05D000409 1.2e-11 73.6 106 49.1
PSO675G7628 Papaver somniferum HOM05D000516 ORTHO05D000409 1.6e-11 73.2 69 58.0
ATR0743G138 Amborella trichopoda HOM05D000516 ORTHO05D000409 2.1e-11 72.8 111 46.8
Actinidia34585 Actinidia chinensis HOM05D000516 ORTHO05D000409 2.7e-11 72.4 33 97.0
GSVIVG01010836001 Vitis vinifera HOM05D000516 ORTHO05D000409 2.7e-11 72.4 33 97.0
VMungo1127G2098 Vigna mungo HOM05D000516 ORTHO05D000409 6.1e-11 71.2 60 61.7
Glyma.11G126600 Glycine max HOM05D000516 ORTHO05D000409 1.0e-10 70.5 67 59.7
BcaC02g11237 Brassica carinata HOM05D000516 ORTHO05D000409 1.8e-10 69.7 73 50.7
C04p18960 Brassica napus HOM05D000516 ORTHO05D000409 1.8e-10 69.7 73 50.7
BolC4t23426H Brassica oleracea HOM05D000516 ORTHO05D000409 1.8e-10 69.7 73 50.7
Aqoxy2G04127 Aquilegia oxysepala HOM05D000516 ORTHO05D000409 3.0e-10 68.9 42 83.3
arahy.Tifrunner.gnm1.ann1.16U9TH Arachis hypogaea HOM05D000516 ORTHO05D000409 3.9e-10 68.6 44 70.5
arahy.Tifrunner.gnm1.ann1.D6MJAY Arachis hypogaea HOM05D000516 ORTHO05D000409 5.1e-10 68.2 33 90.9
BcaC05g24312 Brassica carinata HOM05D000516 ORTHO05D000409 9.7e-09 63.9 107 43.9
SEGI_20718 Sequoiadendron giganteum HOM05D000516 ORTHO05D000409 5.3e-07 58.2 98 37.8
Eucgr.H00344 Eucalyptus grandis HOM05D000516 ORTHO05D000409 1.5e-06 56.6 111 40.5
Eucgr.L02536 Eucalyptus grandis HOM05D000516 ORTHO05D000409 1.5e-06 56.6 111 40.5
Pp3c19_15700 Physcomitrium patens HOM05D000516 ORTHO05D000409 1.5e-06 56.6 71 46.5
Pp3c19_15710 Physcomitrium patens HOM05D000516 ORTHO05D000409 1.5e-06 56.6 71 46.5
AagrBONN_evm.TU.Sc2ySwM_228.848 Anthoceros agrestis HOM05D000516 ORTHO05D000409 2.6e-06 55.8 106 37.7
C03p20680 Brassica napus HOM05D000516 ORTHO05D021702 4.5e-06 55.1 36 72.2
Mapoly0007s0056 Marchantia polymorpha HOM05D000516 ORTHO05D000409 5.9e-06 54.7 41 58.5


User provided reference genes

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