Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.256 Carica papaya HOM05D006737 ORTHO05D008418 8.5e-179 630.2 308 100.0
Atru.chr5.1140 Acer truncatum HOM05D006737 ORTHO05D008418 2.6e-127 459.1 319 69.6
Ciclev10021225m.g Citrus clementina HOM05D006737 ORTHO05D008418 1.2e-121 440.3 318 68.2
Prupe.8G262100 Prunus persica HOM05D006737 ORTHO05D008418 1.2e-121 440.3 283 72.4
Potri.002G203900 Populus trichocarpa HOM05D006737 ORTHO05D008418 6.2e-121 438.0 310 68.4
MD03G1288800 Malus domestica HOM05D006737 ORTHO05D008418 8.1e-121 437.6 320 65.0
MD11G1309100 Malus domestica HOM05D006737 ORTHO05D008418 1.4e-120 436.8 302 68.9
Haze_04944 Corylus avellana HOM05D006737 ORTHO05D008418 3.1e-120 435.6 301 68.1
FvH4_2g25800 Fragaria vesca HOM05D006737 ORTHO05D008418 4.0e-120 435.3 294 69.7
Cfa005906 Carpinus fangiana HOM05D006737 ORTHO05D008418 5.2e-120 434.9 303 68.0
FAN15G3576 Fragaria x ananassa HOM05D006737 ORTHO05D008418 8.9e-120 434.1 304 68.4
FAN24G1027 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.2e-119 433.7 294 69.4
RcHm_v2.0_Chr6g0294111 Rosa chinensis HOM05D006737 ORTHO05D008418 1.3e-118 430.3 306 66.7
Manes.01G219800 Manihot esculenta HOM05D006737 ORTHO05D008418 1.7e-118 429.9 310 65.5
CiPaw.07G109800 Carya illinoinensis HOM05D006737 ORTHO05D008418 1.9e-117 426.4 338 61.8
FAN27G1696 Fragaria x ananassa HOM05D006737 ORTHO05D008418 3.2e-117 425.6 317 65.6
Thecc.01G301300 Theobroma cacao HOM05D006737 ORTHO05D008418 2.7e-116 422.5 355 60.3
Sabra02G0155300 Salix brachista HOM05D006737 ORTHO05D008418 4.3e-114 415.2 361 59.6
TWI14G0449 Tripterygium wilfordii HOM05D006737 ORTHO05D008418 5.6e-114 414.8 283 68.9
GSVIVG01028025001 Vitis vinifera HOM05D006737 ORTHO05D008418 2.1e-113 412.9 302 66.9
CSS0030900 Camellia sinensis var. sinensis HOM05D006737 ORTHO05D008418 3.6e-113 412.1 309 66.7
Gorai.008G144900 Gossypium raimondii HOM05D006737 ORTHO05D008418 1.2e-111 407.1 324 59.6
FAN20G1602 Fragaria x ananassa HOM05D006737 ORTHO05D008418 1.7e-110 403.3 299 65.2
Gohir.A12G130100 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.7e-110 403.3 324 59.3
Gohir.D12G133900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 1.7e-110 403.3 324 59.0
CiPaw.07G109600 Carya illinoinensis HOM05D006737 ORTHO05D008418 2.9e-110 402.5 255 72.9
QL12p028401 Quercus lobata HOM05D006737 ORTHO05D008418 1.9e-109 399.8 314 61.5
vmacro02447 Vaccinium macrocarpon HOM05D006737 ORTHO05D008418 7.1e-109 397.9 308 64.0
TAR365G0544 Trochodendron aralioides HOM05D006737 ORTHO05D008418 1.2e-108 397.1 323 63.2
Eucgr.H01107 Eucalyptus grandis HOM05D006737 ORTHO05D008418 7.8e-108 394.4 315 62.9
Nn3g21504 Nelumbo nucifera HOM05D006737 ORTHO05D008418 2.3e-107 392.9 309 61.8
Gohir.D08G085900 Gossypium hirsutum HOM05D006737 ORTHO05D008418 3.9e-107 392.1 293 63.5
Gorai.004G090400 Gossypium raimondii HOM05D006737 ORTHO05D008418 6.6e-107 391.3 293 63.5
Gohir.A08G076400 Gossypium hirsutum HOM05D006737 ORTHO05D008418 5.6e-106 388.3 280 65.0
CANSAT25G2451 Cannabis sativa HOM05D006737 ORTHO05D008418 9.9e-103 377.5 297 62.6
Lj6g0001904 Lotus japonicus HOM05D006737 ORTHO05D008418 3.8e-102 375.6 298 59.4
Rhsim13G0009900 Rhododendron simsii HOM05D006737 ORTHO05D008418 4.9e-102 375.2 314 60.2
MBI19_g26092_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 2.4e-101 372.9 277 63.9
Glyma.19G211400 Glycine max HOM05D006737 ORTHO05D008418 4.6e-100 368.6 283 62.5
Aqoxy2G02933 Aquilegia oxysepala HOM05D006737 ORTHO05D008418 2.5e-98 362.8 295 61.7
MSTRG.12607 Avicennia marina HOM05D006737 ORTHO05D008418 1.3e-97 360.5 294 59.9
ECA236G1530 Erigeron canadensis HOM05D006737 ORTHO05D008418 1.6e-97 360.1 281 61.9
PGR119G0152 Punica granatum HOM05D006737 ORTHO05D008418 2.8e-97 359.4 318 55.0
Lsat_1_v5_gn_8_164261 Lactuca sativa HOM05D006737 ORTHO05D008418 1.8e-96 356.7 282 60.6
AL6G50710 Arabidopsis lyrata HOM05D006737 ORTHO05D008418 3.1e-96 355.9 296 57.8
CAN.G1209.24 Capsicum annuum HOM05D006737 ORTHO05D008418 3.1e-96 355.9 288 60.8
Hma1.2p1_0491F.1_g164620 Hydrangea macrophylla HOM05D006737 ORTHO05D008418 2.0e-95 353.2 296 60.8
CsaV3_6G041030 Cucumis sativus L. HOM05D006737 ORTHO05D008418 3.4e-95 352.4 306 57.5
Thhalv10028823m.g Eutrema salsugineum HOM05D006737 ORTHO05D008418 4.5e-95 352.1 297 57.2
Phvul.001G207600 Phaseolus vulgaris HOM05D006737 ORTHO05D008418 4.5e-95 352.1 283 59.7
Duzib138G1512 Durio zibethinus HOM05D006737 ORTHO05D008418 9.9e-95 350.9 255 65.9
PSO170G1161 Papaver somniferum HOM05D006737 ORTHO05D008418 1.3e-94 350.5 298 56.7
MELO3C024580.2 Cucumis melo HOM05D006737 ORTHO05D008418 3.8e-94 349.0 299 57.5
Sopen06g035940 Solanum pennellii HOM05D006737 ORTHO05D008418 6.4e-94 348.2 285 59.6
ClCG01G014930 Citrullus lanatus HOM05D006737 ORTHO05D008418 8.4e-94 347.8 306 57.5
Solyc06g084570.4 Solanum lycopersicum HOM05D006737 ORTHO05D008418 8.4e-94 347.8 289 59.2
CARHR250600 Cardamine hirsuta HOM05D006737 ORTHO05D008418 1.9e-93 346.7 296 55.7
PSO407G0435 Papaver somniferum HOM05D006737 ORTHO05D008418 1.9e-93 346.7 298 56.7
Cc01_g20900 Coffea canephora HOM05D006737 ORTHO05D008418 3.2e-93 345.9 292 58.6
Carub.0006s3475 Capsella rubella HOM05D006737 ORTHO05D008418 4.2e-93 345.5 297 56.6
Hund05430 Selenicereus undatus HOM05D006737 ORTHO05D008418 5.5e-93 345.1 292 56.8
EL10Ac7g17513 Beta vulgaris HOM05D006737 ORTHO05D008418 9.3e-93 344.4 285 57.9
BcaB01g02446 Brassica carinata HOM05D006737 ORTHO05D008418 9.3e-93 344.4 294 56.1
Actinidia01489 Actinidia chinensis HOM05D006737 ORTHO05D008418 1.6e-92 343.6 237 67.1
Nitab4.5_0004367g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 1.6e-92 343.6 360 51.9
DCAR_002840 Daucus carota HOM05D006737 ORTHO05D008418 2.7e-92 342.8 318 56.0
Sc05g0003760 Simmondsia chinensis HOM05D006737 ORTHO05D008418 4.6e-92 342.0 294 56.8
AUR62008669 Chenopodium quinoa HOM05D006737 ORTHO05D008418 6.0e-92 341.7 290 57.6
SalBow2G2271 Salvia bowleyana HOM05D006737 ORTHO05D008418 6.0e-92 341.7 255 62.0
AUR62025575 Chenopodium quinoa HOM05D006737 ORTHO05D008418 1.0e-91 340.9 290 58.3
MBI19_g25361_MAGBIO Magnolia biondii HOM05D006737 ORTHO05D008418 1.0e-91 340.9 317 55.2
Sp6g02290 Schrenkiella parvula HOM05D006737 ORTHO05D008418 1.8e-91 340.1 302 56.0
arahy.Tifrunner.gnm1.ann1.AY1VU4 Arachis hypogaea HOM05D006737 ORTHO05D008418 6.7e-91 338.2 312 56.1
BcaC01g06761 Brassica carinata HOM05D006737 ORTHO05D008418 1.9e-90 336.7 302 55.6
Aa31LG5G2050 Aethionema arabicum HOM05D006737 ORTHO05D008418 7.4e-90 334.7 298 54.7
C03p37890 Brassica napus HOM05D006737 ORTHO05D008418 4.8e-89 332.0 310 54.5
BolC3t16077H Brassica oleracea HOM05D006737 ORTHO05D008418 8.2e-89 331.3 309 53.7
Peaxi162Scf00140g01213 Petunia axillaris HOM05D006737 ORTHO05D008418 8.2e-89 331.3 259 64.1
VMungo1383G2597 Vigna mungo HOM05D006737 ORTHO05D008418 1.8e-88 330.1 257 60.3
Migut.O00484 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.5e-87 327.0 316 55.4
Lalb_Chr02g0146391 Lupinus albus HOM05D006737 ORTHO05D008418 1.5e-87 327.0 281 56.6
Migut.N01508 Erythranthe guttata HOM05D006737 ORTHO05D008418 2.0e-87 326.6 291 57.7
Oeu048335.1 Olea europaea HOM05D006737 ORTHO05D008418 3.8e-86 322.4 228 67.5
HanXRQChr04g0114161 Helianthus annuus HOM05D006737 ORTHO05D008418 8.4e-86 321.2 256 57.0
SGA_v2.0_scaffold198G41142 Striga asiatica HOM05D006737 ORTHO05D008418 1.4e-85 320.5 291 55.7
A03p31080 Brassica napus HOM05D006737 ORTHO05D008418 2.5e-85 319.7 308 52.6
BraA03t12285Z Brassica rapa HOM05D006737 ORTHO05D008418 2.5e-85 319.7 308 52.6
CDE01G0235 Ceratophyllum demersum HOM05D006737 ORTHO05D008418 1.0e-83 314.3 309 49.8
Migut.J01135 Erythranthe guttata HOM05D006737 ORTHO05D008418 1.0e-83 314.3 274 59.5
arahy.Tifrunner.gnm1.ann1.B4PCIP Arachis hypogaea HOM05D006737 ORTHO05D008418 2.3e-83 313.2 341 50.4
COL.COLO4_23338 Corchorus olitorius HOM05D006737 ORTHO05D008418 3.3e-82 309.3 210 68.6
AT4G02405 Arabidopsis thaliana HOM05D006737 ORTHO05D008418 2.8e-81 306.2 274 54.4
Lj2A1195G25 Lonicera japonica HOM05D006737 ORTHO05D008418 5.5e-69 265.4 268 52.6
Os07g0247100 Oryza sativa ssp. japonica HOM05D006737 ORTHO05D008418 1.7e-65 253.8 292 42.5
Zm00001eb097030 Zea mays HOM05D006737 ORTHO05D008418 3.5e-63 246.1 292 44.2
Sed0017513 Sechium edule HOM05D006737 ORTHO05D008418 5.5e-61 238.8 214 54.7
Dinv33057 Davidia involucrata HOM05D006737 ORTHO05D008418 5.3e-48 195.7 170 58.8
Nitab4.5_0002820g0110 Nicotiana tabacum HOM05D006737 ORTHO05D008418 9.4e-45 184.9 140 67.1
Pp3c24_12380 Physcomitrium patens HOM05D006737 ORTHO05D008418 2.7e-44 183.3 299 38.5
Oeu010666.1 Olea europaea HOM05D006737 ORTHO05D008418 2.9e-38 163.3 131 55.7
PGSC0003DMG400024036 Solanum tuberosum HOM05D006737 ORTHO05D008418 4.2e-37 159.5 118 58.5
arahy.Tifrunner.gnm1.ann1.MB1A81 Arachis hypogaea HOM05D006737 ORTHO05D008418 2.0e-34 150.6 124 57.3
Mapoly0132s0018 Marchantia polymorpha HOM05D006737 ORTHO05D008418 5.9e-31 139.0 236 36.0
VMungo1383G3174 Vigna mungo HOM05D006737 ORTHO05D008418 4.3e-29 132.9 255 34.9
Dinv31287 Davidia involucrata HOM05D006737 ORTHO05D008418 2.8e-28 130.2 86 69.8
Dinv07247 Davidia involucrata HOM05D006737 ORTHO05D008418 8.0e-28 128.6 86 68.6
arahy.Tifrunner.gnm1.ann1.MU6BTE Arachis hypogaea HOM05D006737 ORTHO05D008418 1.2e-26 124.8 116 50.9
Dinv17961 Davidia involucrata HOM05D006737 ORTHO05D008418 2.9e-25 120.2 86 65.1
SEGI_39136 Sequoiadendron giganteum HOM05D006737 ORTHO05D008418 3.9e-22 109.8 141 43.3
BcaB01g02050 Brassica carinata HOM05D006737 ORTHO05D008418 4.6e-15 86.3 96 47.9
Dinv02523 Davidia involucrata HOM05D006737 ORTHO05D008418 1.0e-14 85.1 58 67.2
BcaB01g02447 Brassica carinata HOM05D006737 ORTHO05D008418 2.5e-13 80.5 64 59.4
Dinv32677 Davidia involucrata HOM05D006737 ORTHO05D008418 4.0e-11 73.2 52 63.5
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 1.4e-08 64.7 245 25.7
MCO02G241 Micromonas commoda HOM05D006737 ORTHO05D008418 5.4e-08 62.8 215 26.5
Atru.chr9.1259 Acer truncatum HOM05D000593 ORTHO05D002268 9.2e-08 62.0 38 78.9
Atru.chr3.1390 Acer truncatum HOM05D000593 ORTHO05D000562 2.1e-07 60.8 38 76.3


User provided reference genes

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