Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc9.142 Carica papaya HOM05D007881 ORTHO05D009922 1.9e-31 138.7 75 100.0
Manes.12G005400 Manihot esculenta HOM05D007881 ORTHO05D009922 5.9e-17 90.5 73 63.0
Ciclev10033256m.g Citrus clementina HOM05D007881 ORTHO05D009922 1.3e-16 89.4 72 61.1
COL.COLO4_38031 Corchorus olitorius HOM05D007881 ORTHO05D009922 1.1e-15 86.3 73 60.3
Atru.chr6.1889 Acer truncatum HOM05D007881 ORTHO05D009922 1.5e-15 85.9 75 60.0
Thecc.05G194300 Theobroma cacao HOM05D007881 ORTHO05D009922 1.9e-15 85.5 75 64.0
PGR119G1449 Punica granatum HOM05D007881 ORTHO05D009922 2.5e-15 85.1 72 59.7
Potri.015G136500 Populus trichocarpa HOM05D007881 ORTHO05D009922 7.2e-15 83.6 72 61.1
Gohir.A05G392600 Gossypium hirsutum HOM05D007881 ORTHO05D009922 3.6e-14 81.3 73 58.9
Gohir.D04G024500 Gossypium hirsutum HOM05D007881 ORTHO05D009922 3.6e-14 81.3 73 58.9
Gorai.012G027000 Gossypium raimondii HOM05D007881 ORTHO05D009922 3.6e-14 81.3 73 58.9
Sabra15G0148100 Salix brachista HOM05D007881 ORTHO05D009922 6.1e-14 80.5 72 56.9
CiPaw.07G080900 Carya illinoinensis HOM05D007881 ORTHO05D009922 8.0e-14 80.1 70 58.6
MD12G1086700 Malus domestica HOM05D007881 ORTHO05D009922 8.0e-14 80.1 70 55.7
BcaC07g42091 Brassica carinata HOM05D007881 ORTHO05D009922 2.3e-13 78.6 76 53.9
BraA08t35524Z Brassica rapa HOM05D007881 ORTHO05D009922 2.3e-13 78.6 77 55.8
Thhalv10009243m.g Eutrema salsugineum HOM05D007881 ORTHO05D009922 2.3e-13 78.6 75 54.7
Sp1g04830 Schrenkiella parvula HOM05D007881 ORTHO05D009922 3.0e-13 78.2 76 55.3
TWI36G1222 Tripterygium wilfordii HOM05D007881 ORTHO05D009922 3.0e-13 78.2 74 56.8
Potri.012G134200 Populus trichocarpa HOM05D007881 ORTHO05D009922 4.0e-13 77.8 74 62.2
MD04G1245200 Malus domestica HOM05D007881 ORTHO05D009922 1.5e-12 75.9 75 53.3
Prupe.6G361800 Prunus persica HOM05D007881 ORTHO05D009922 1.5e-12 75.9 75 57.3
A08p36200 Brassica napus HOM05D007881 ORTHO05D009922 2.0e-12 75.5 74 56.8
THA.LOC109117253 Tarenaya hassleriana HOM05D007881 ORTHO05D009922 2.6e-12 75.1 80 55.0
AL1G15960 Arabidopsis lyrata HOM05D007881 ORTHO05D009922 3.4e-12 74.7 79 51.9
CARHR005530 Cardamine hirsuta HOM05D007881 ORTHO05D009922 3.4e-12 74.7 75 53.3
vmacro10404 Vaccinium macrocarpon HOM05D007881 ORTHO05D009922 3.4e-12 74.7 72 51.4
AT1G06010 Arabidopsis thaliana HOM05D007881 ORTHO05D009922 4.4e-12 74.3 76 52.6
BcaC07g36818 Brassica carinata HOM05D007881 ORTHO05D009922 4.4e-12 74.3 73 54.8
BolC8t47025H Brassica oleracea HOM05D007881 ORTHO05D009922 4.4e-12 74.3 73 54.8
QL12p018644 Quercus lobata HOM05D007881 ORTHO05D009922 4.4e-12 74.3 72 62.5
Carub.0001s0535 Capsella rubella HOM05D007881 ORTHO05D009922 7.5e-12 73.6 79 51.9
GSVIVG01019086001 Vitis vinifera HOM05D007881 ORTHO05D009922 9.7e-12 73.2 70 52.9
MELO3C010052.2 Cucumis melo HOM05D007881 ORTHO05D009922 1.1e-10 69.7 73 49.3
Eucgr.B01417 Eucalyptus grandis HOM05D007881 ORTHO05D009922 1.4e-10 69.3 40 75.0
FAN02G0717 Fragaria x ananassa HOM05D007881 ORTHO05D009922 1.8e-10 68.9 69 49.3
RcHm_v2.0_Chr3g0447831 Rosa chinensis HOM05D007881 ORTHO05D009922 1.8e-10 68.9 76 57.9
CSS0004298 Camellia sinensis var. sinensis HOM05D007881 ORTHO05D009922 2.4e-10 68.6 72 51.4
BraA09t42051Z Brassica rapa HOM05D007881 ORTHO05D009922 4.1e-10 67.8 76 50.0
FvH4_6g00460 Fragaria vesca HOM05D007881 ORTHO05D009922 4.1e-10 67.8 66 51.5
ClCG03G010640 Citrullus lanatus HOM05D007881 ORTHO05D009922 5.3e-10 67.4 70 50.0
AUR62000305 Chenopodium quinoa HOM05D007881 ORTHO05D009922 7.0e-10 67.0 74 43.2
arahy.Tifrunner.gnm1.ann1.X7CW9T Arachis hypogaea HOM05D007881 ORTHO05D009922 9.1e-10 66.6 72 48.6
TAR362G1041 Trochodendron aralioides HOM05D007881 ORTHO05D009922 9.1e-10 66.6 42 69.0
Cc09_g03690 Coffea canephora HOM05D007881 ORTHO05D009922 1.2e-09 66.2 42 64.3
Actinidia03288 Actinidia chinensis HOM05D007881 ORTHO05D009922 1.6e-09 65.9 42 73.8
Medtr3g032520 Medicago truncatula HOM05D007881 ORTHO05D009922 1.6e-09 65.9 68 52.9
arahy.Tifrunner.gnm1.ann1.FFCC7D Arachis hypogaea HOM05D007881 ORTHO05D009922 2.0e-09 65.5 72 47.2
A09p67190 Brassica napus HOM05D007881 ORTHO05D009922 2.0e-09 65.5 41 70.7
C08p51460 Brassica napus HOM05D000559 ORTHO05D009922 2.0e-09 65.5 41 70.7
BolC8t52672H Brassica oleracea HOM05D007881 ORTHO05D009922 2.0e-09 65.5 41 70.7
CsaV3_1G044490 Cucumis sativus L. HOM05D007881 ORTHO05D009922 2.0e-09 65.5 40 77.5
FAN09G3126 Fragaria x ananassa HOM05D007881 ORTHO05D009922 2.0e-09 65.5 66 50.0
Aqoxy3G03631 Aquilegia oxysepala HOM05D007881 ORTHO05D009922 2.7e-09 65.1 42 64.3
AUR62006650 Chenopodium quinoa HOM05D007881 ORTHO05D009922 2.7e-09 65.1 74 47.3
Nn7g37671 Nelumbo nucifera HOM05D007881 ORTHO05D009922 2.7e-09 65.1 42 66.7
Solyc04g056425.1 Solanum lycopersicum HOM05D007881 ORTHO05D009922 3.5e-09 64.7 40 70.0
Sopen04g025320 Solanum pennellii HOM05D000039 ORTHO05D000366 3.5e-09 64.7 40 70.0
Oeu034791.1 Olea europaea HOM05D007881 ORTHO05D009922 7.7e-09 63.5 40 67.5
SalBow1G5699 Salvia bowleyana HOM05D007881 ORTHO05D009922 7.7e-09 63.5 40 70.0
Lalb_Chr25g0282841 Lupinus albus HOM05D007881 ORTHO05D009922 1.0e-08 63.2 71 52.1
Nitab4.5_0000083g0100 Nicotiana tabacum HOM05D007881 ORTHO05D009922 1.0e-08 63.2 42 61.9
CAN.G217.11 Capsicum annuum HOM05D007881 ORTHO05D009922 1.3e-08 62.8 40 67.5
Sc16g0010420 Simmondsia chinensis HOM05D003813 ORTHO05D004557 2.2e-08 62.0 70 44.3
Migut.F02122 Erythranthe guttata HOM05D007881 ORTHO05D009922 2.9e-08 61.6 40 65.0
Nitab4.5_0001435g0080 Nicotiana tabacum HOM05D007881 ORTHO05D009922 3.8e-08 61.2 42 59.5
Phvul.005G031800 Phaseolus vulgaris HOM05D007881 ORTHO05D009922 3.8e-08 61.2 41 68.3
Psat5g210160 Pisum sativum HOM05D007881 ORTHO05D009922 3.8e-08 61.2 71 57.7
HPP92_003553 Vanilla planifolia HOM05D007881 ORTHO05D009922 3.8e-08 61.2 39 69.2
Psat5g211080 Pisum sativum HOM05D007881 ORTHO05D009922 5.0e-08 60.8 69 52.2
ATR0215G006 Amborella trichopoda HOM05D007881 ORTHO05D009922 8.5e-08 60.1 40 65.0
Glyma.11G151200 Glycine max HOM05D007881 ORTHO05D009922 1.1e-07 59.7 41 65.9
EL10Ac4g09960 Beta vulgaris HOM05D007881 ORTHO05D009922 2.5e-07 58.5 69 50.7
Lj3g0003474 Lotus japonicus HOM05D007881 ORTHO05D009922 2.5e-07 58.5 42 59.5
Peaxi162Scf00048g00055 Petunia axillaris HOM05D007881 ORTHO05D009922 2.5e-07 58.5 40 60.0
Sed0019316 Sechium edule HOM05D007881 ORTHO05D009922 3.2e-07 58.2 36 72.2
CDE02G1687 Ceratophyllum demersum HOM05D007881 ORTHO05D009922 4.2e-07 57.8 42 59.5
Lsat_1_v5_gn_1_127981 Lactuca sativa HOM05D007881 ORTHO05D009922 4.2e-07 57.8 70 38.6
arahy.Tifrunner.gnm1.ann1.FG2V1D Arachis hypogaea HOM05D007881 ORTHO05D009922 5.5e-07 57.4 42 64.3
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 7.2e-07 57.0 41 53.7
Zm00001eb067480 Zea mays HOM05D007881 ORTHO05D009922 7.2e-07 57.0 39 61.5
DCAR_007684 Daucus carota HOM05D007881 ORTHO05D009922 9.4e-07 56.6 42 57.1
HanXRQChr16g0510911 Helianthus annuus HOM05D007881 ORTHO05D009922 8.0e-06 53.5 40 52.5
MBI17_g00966_MAGBIO Magnolia biondii HOM05D007881 ORTHO05D009922 8.0e-06 53.5 38 57.9


User provided reference genes

Program Settings