Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 9.5e-245 849.7 431 100.0
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 3.3e-205 718.4 431 82.4
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.6e-204 716.1 431 82.4
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.8e-204 715.3 431 82.6
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 1.8e-203 712.6 431 82.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 5.3e-203 711.1 431 81.7
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 5.5e-200 701.0 428 80.6
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.6e-199 699.5 431 80.3
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.6e-199 698.4 431 80.0
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.3e-198 695.7 431 80.3
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 3.9e-198 694.9 431 80.0
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 6.3e-196 687.6 431 79.6
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.4e-195 686.4 412 82.5
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.0e-194 682.6 433 78.8
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.0e-193 680.2 433 79.4
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 1.7e-193 679.5 406 81.8
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 2.9e-193 678.7 424 79.5
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 3.8e-193 678.3 433 78.1
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 5.0e-193 677.9 432 77.3
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 2.1e-191 672.5 415 79.5
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 7.9e-191 670.6 442 76.2
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 1.8e-190 669.5 400 80.5
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 3.9e-190 668.3 431 76.1
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.1e-190 667.9 426 77.2
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.1e-189 666.8 436 76.4
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 1.5e-189 666.4 431 76.6
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.0e-189 666.0 414 78.5
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.3e-189 665.2 419 76.8
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 4.4e-189 664.8 398 80.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 2.2e-188 662.5 414 77.8
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 2.8e-188 662.1 431 75.4
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 2.8e-188 662.1 426 76.8
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 2.8e-188 662.1 422 76.3
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 8.2e-188 660.6 426 76.5
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 5.3e-187 657.9 426 76.3
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 5.3e-187 657.9 398 80.2
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 9.1e-187 657.1 465 73.3
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 2.6e-186 655.6 416 76.0
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 2.6e-186 655.6 422 76.5
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 1.0e-185 653.7 400 78.8
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.3e-185 653.3 432 75.0
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 2.2e-185 652.5 419 75.7
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.8e-185 651.7 400 79.0
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 1.1e-184 650.2 424 72.9
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.4e-184 649.8 431 74.5
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.4e-184 649.8 431 73.8
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 3.2e-184 648.7 431 73.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 3.2e-184 648.7 432 74.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.2e-184 648.3 422 75.1
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.6e-183 646.4 431 72.9
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 2.1e-183 646.0 431 72.9
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.4e-182 643.3 398 78.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 1.4e-182 643.3 469 69.5
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 2.3e-182 642.5 412 75.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 3.9e-182 641.7 403 76.2
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 5.2e-182 641.3 431 72.9
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.1e-181 640.2 392 79.8
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.1e-181 640.2 403 76.2
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 3.3e-181 638.6 418 75.8
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 4.4e-181 638.3 433 71.8
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 4.4e-181 638.3 394 81.2
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 9.7e-181 637.1 403 76.7
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 9.7e-181 637.1 403 75.9
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.7e-180 636.3 419 72.8
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 2.2e-180 636.0 422 73.0
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 8.2e-180 634.0 432 74.1
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 4.1e-179 631.7 418 75.1
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 9.1e-179 630.6 392 77.0
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 1.2e-178 630.2 401 76.3
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 2.6e-178 629.0 432 72.7
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.5e-178 628.6 397 74.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 3.2e-176 622.1 433 70.7
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 3.2e-176 622.1 403 76.2
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 4.2e-176 621.7 433 70.7
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 2.7e-175 619.0 452 71.0
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 8.0e-175 617.5 384 80.5
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 8.0e-175 617.5 394 76.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.0e-174 617.1 433 70.4
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.0e-174 617.1 433 70.4
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.5e-173 610.9 421 71.5
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 3.1e-171 605.5 551 59.5
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 7.0e-171 604.4 433 70.2
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.2e-170 603.6 387 74.4
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 9.4e-168 594.0 422 67.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.4e-166 590.1 432 69.2
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 8.8e-166 587.4 392 76.3
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 7.5e-165 584.3 471 65.6
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.3e-164 583.6 357 80.1
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 2.4e-163 579.3 426 66.7
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.0e-161 573.9 392 74.5
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 5.2e-158 561.6 431 66.8
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.7e-156 556.6 332 80.7
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 1.1e-155 553.9 393 72.8
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.0e-154 549.7 344 75.9
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.1e-151 538.1 395 68.4
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.0e-149 533.1 336 79.2
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 7.5e-149 531.2 395 62.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 2.9e-148 529.3 403 66.7
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.9e-147 526.6 329 76.6
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 3.5e-146 522.3 420 60.7
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 7.8e-146 521.2 381 65.1
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 4.3e-144 515.4 378 64.8
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 1.7e-137 493.4 418 64.6
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.0e-129 467.6 334 69.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 5.6e-128 461.8 354 69.2
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.1e-126 456.1 341 68.0
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 4.8e-119 432.2 309 70.9
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 2.4e-118 429.9 369 55.3
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.4e-115 420.6 264 76.5
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 3.1e-110 402.9 277 71.8
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 9.6e-104 381.3 323 61.6
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.6e-103 380.6 320 59.1
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 5.5e-99 365.5 419 46.5
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.2e-98 364.4 235 74.0
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.3e-97 360.1 396 48.0
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 5.5e-91 339.0 399 45.6
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 2.9e-68 263.5 170 72.4
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 6.5e-68 262.3 250 56.8
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 6.5e-68 262.3 274 49.6
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.7e-60 237.7 160 71.9
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.7e-58 229.6 129 85.3
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.1e-54 218.4 122 86.1
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 3.1e-54 216.9 187 59.4
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.3e-52 211.5 339 35.4
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-46 190.7 167 56.9
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 9.8e-40 168.7 142 62.0
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 8.3e-31 139.0 107 67.3
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.3e-28 131.7 87 73.6
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 8.6e-28 129.0 416 30.8
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.5e-27 127.5 89 66.3
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.6e-27 126.3 94 69.1
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 2.3e-20 104.4 64 70.3
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 4.9e-15 86.7 71 60.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.1e-14 85.5 70 58.6
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 1.6e-13 81.6 49 71.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 5.6e-11 73.2 62 56.5
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 4.0e-09 67.0 45 64.4
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 4.0e-09 67.0 63 49.2
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 1.1e-06 58.9 44 59.1
ATR0721G059 Amborella trichopoda HOM05D005532 ORTHO05D006873 1.4e-06 58.5 75 42.7
AUR62039850 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.9e-06 58.2 81 45.7


User provided reference genes

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