Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 7.1e-104 380.6 187 100.0
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 2.7e-71 272.3 163 82.2
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 3.6e-71 271.9 164 81.1
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 4.7e-71 271.6 161 82.0
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 4.7e-71 271.6 161 82.0
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 7.9e-71 270.8 164 79.9
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 1.0e-70 270.4 161 81.4
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 1.0e-70 270.4 164 79.9
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 1.8e-70 269.6 163 81.6
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 3.9e-70 268.5 163 81.6
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 6.7e-70 267.7 164 80.5
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 8.8e-70 267.3 164 80.5
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 2.0e-69 266.2 164 81.1
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.3e-69 265.4 164 79.9
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 3.3e-69 265.4 164 79.9
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 4.4e-69 265.0 164 79.9
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.2e-68 262.7 164 78.0
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 2.8e-68 262.3 164 78.7
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 2.8e-68 262.3 164 78.7
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 4.8e-68 261.5 164 78.0
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 4.8e-68 261.5 162 79.0
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 4.8e-68 261.5 162 77.8
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 6.3e-68 261.2 164 78.0
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 6.3e-68 261.2 159 78.6
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 8.2e-68 260.8 161 76.4
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 8.2e-68 260.8 158 78.5
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 8.2e-68 260.8 163 81.6
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 1.1e-67 260.4 164 77.4
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 1.1e-67 260.4 164 76.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.4e-67 260.0 159 79.2
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 1.4e-67 260.0 158 77.8
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 2.4e-67 259.2 163 74.8
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 2.4e-67 259.2 159 78.6
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 2.4e-67 259.2 178 73.6
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.4e-67 259.2 164 77.4
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 3.1e-67 258.8 164 77.4
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.1e-67 258.8 158 77.8
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 5.3e-67 258.1 164 76.8
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 5.3e-67 258.1 164 77.4
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 5.3e-67 258.1 163 76.7
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 5.3e-67 258.1 164 77.4
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 5.3e-67 258.1 164 75.6
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 5.3e-67 258.1 159 78.6
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 7.0e-67 257.7 163 76.1
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 7.0e-67 257.7 168 75.6
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 7.0e-67 257.7 164 76.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 9.1e-67 257.3 164 75.0
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 9.1e-67 257.3 164 75.0
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 1.5e-66 256.5 161 77.0
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 1.5e-66 256.5 163 77.3
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 2.0e-66 256.1 157 79.0
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 2.6e-66 255.8 164 76.2
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 3.5e-66 255.4 161 75.2
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 4.5e-66 255.0 164 76.8
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 7.7e-66 254.2 158 79.7
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 1.0e-65 253.8 163 74.2
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.0e-65 253.8 161 74.5
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 1.0e-65 253.8 164 76.2
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.3e-65 253.4 164 76.2
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.3e-65 253.4 168 75.0
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 1.3e-65 253.4 164 76.2
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-65 253.1 167 75.4
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 1.7e-65 253.1 167 75.4
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 1.7e-65 253.1 163 73.6
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 1.7e-65 253.1 168 71.4
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 1.7e-65 253.1 162 73.5
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 2.9e-65 252.3 164 75.6
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 2.9e-65 252.3 164 75.6
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 3.8e-65 251.9 163 76.1
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 5.0e-65 251.5 168 71.4
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 5.0e-65 251.5 168 71.4
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 5.0e-65 251.5 161 76.4
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 8.5e-65 250.8 163 73.0
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 1.1e-64 250.4 163 73.6
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 1.1e-64 250.4 159 74.8
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 1.1e-64 250.4 164 76.8
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.5e-64 250.0 155 76.8
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 1.9e-64 249.6 156 78.2
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.9e-64 249.6 155 76.1
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 2.5e-64 249.2 163 72.4
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 2.5e-64 249.2 163 72.4
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 2.5e-64 249.2 165 73.3
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 2.5e-64 249.2 163 74.8
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 3.2e-64 248.8 163 74.8
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 3.2e-64 248.8 163 74.8
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 3.2e-64 248.8 163 74.8
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 3.2e-64 248.8 153 76.5
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 4.2e-64 248.4 164 72.6
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 7.2e-64 247.7 163 74.2
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 9.4e-64 247.3 158 75.9
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 9.4e-64 247.3 158 75.9
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 9.4e-64 247.3 155 75.5
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 1.6e-63 246.5 163 74.2
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 2.1e-63 246.1 160 77.5
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 2.7e-63 245.7 163 74.2
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 2.7e-63 245.7 159 75.5
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 2.7e-63 245.7 157 75.8
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 3.6e-63 245.4 155 74.8
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.6e-63 245.4 155 74.8
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 4.7e-63 245.0 158 74.1
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 8.0e-63 244.2 163 72.4
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.4e-62 243.4 162 69.8
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.4e-62 243.4 164 73.2
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 2.3e-62 242.7 158 75.3
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 3.0e-62 242.3 166 71.7
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 5.2e-62 241.5 164 71.3
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 5.2e-62 241.5 154 76.0
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 6.7e-62 241.1 169 70.4
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 6.7e-62 241.1 164 73.8
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 1.1e-61 240.4 156 73.7
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 1.5e-61 240.0 207 61.8
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 2.0e-61 239.6 164 68.3
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 5.7e-61 238.0 164 72.0
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 4.8e-60 235.0 156 74.4
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 6.3e-60 234.6 156 73.7
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 1.8e-59 233.0 160 74.4
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 5.3e-59 231.5 161 71.4
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 9.1e-59 230.7 161 68.9
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 1.6e-58 229.9 159 71.1
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 5.9e-58 228.0 154 72.7
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 1.3e-57 226.9 154 68.8
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.7e-57 226.5 161 70.2
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.7e-57 226.5 213 56.3
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 5.0e-57 224.9 161 66.5
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 6.5e-57 224.6 161 66.5
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 1.1e-56 223.8 164 70.1
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 2.5e-56 222.6 139 79.1
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 2.7e-55 219.2 142 76.1
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 8.0e-55 217.6 155 67.7
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.3e-54 216.1 161 64.6
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 4.0e-54 215.3 186 62.4
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 8.8e-54 214.2 138 77.5
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 1.5e-53 213.4 140 74.3
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 2.0e-53 213.0 156 68.6
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 2.0e-53 213.0 138 76.8
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 3.4e-53 212.2 131 79.4
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 4.4e-53 211.8 159 65.4
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 9.8e-53 210.7 140 72.1
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 1.7e-52 209.9 160 66.9
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 2.0e-50 203.0 146 67.8
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 3.8e-49 198.7 161 59.0
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 8.5e-49 197.6 155 64.5
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 8.5e-49 197.6 158 58.9
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 8.5e-49 197.6 157 59.2
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 2.5e-48 196.1 161 61.5
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 2.5e-48 196.1 155 63.2
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 2.5e-48 196.1 154 61.0
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 9.4e-48 194.1 157 60.5
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 1.6e-47 193.4 119 77.3
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 8.0e-47 191.0 165 58.2
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 1.7e-44 183.3 155 58.1
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.2e-42 177.2 163 56.4
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 3.3e-40 169.1 138 65.2
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 6.8e-38 161.4 113 69.9
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 3.7e-36 155.6 152 53.3
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 4.9e-36 155.2 113 71.7
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 5.4e-35 151.8 173 47.4
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 7.3e-32 141.4 93 74.2
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 4.7e-31 138.7 180 40.6
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 1.8e-30 136.7 161 43.5
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 1.2e-29 134.0 87 75.9
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 3.9e-25 119.0 71 74.6
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 2.1e-23 113.2 84 69.0
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 6.2e-23 111.7 72 68.1
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 1.3e-17 94.0 84 58.3
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 1.1e-16 90.9 119 45.4
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 4.3e-16 89.0 180 33.3
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 2.1e-15 86.7 125 47.2
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 6.2e-15 85.1 95 54.7
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 5.2e-14 82.0 83 56.6
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 6.8e-14 81.6 46 73.9
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 1.2e-13 80.9 89 55.1
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 3.4e-13 79.3 67 59.7
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 3.7e-12 75.9 55 56.4
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 1.6e-10 70.5 44 72.7
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 5.1e-09 65.5 73 47.9
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 1.2e-07 60.8 48 64.6
VMungo0331G1368 Vigna mungo HOM05D003706 ORTHO05D031576 5.2e-06 55.5 28 92.9
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 6.8e-06 55.1 29 86.2


User provided reference genes

Program Settings