Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc877.1 Carica papaya HOM05D001216 ORTHO05D008355 2.3e-47 191.8 90 100.0
Ciclev10018854m.g Citrus clementina HOM05D001216 ORTHO05D008355 9.8e-43 176.4 88 88.6
Manes.09G124400 Manihot esculenta HOM05D001216 ORTHO05D008355 1.7e-42 175.6 88 87.5
TWI34G0259 Tripterygium wilfordii HOM05D001216 ORTHO05D008355 8.3e-42 173.3 88 87.5
CSS0014281 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D008355 1.4e-41 172.6 88 86.4
CSS0049591 Camellia sinensis var. sinensis HOM05D001216 ORTHO05D008355 1.4e-41 172.6 88 86.4
Eucgr.K00092 Eucalyptus grandis HOM05D001216 ORTHO05D008355 2.4e-41 171.8 88 86.4
COL.COLO4_06399 Corchorus olitorius HOM05D001216 ORTHO05D008355 4.1e-41 171.0 87 86.2
Haze_00610 Corylus avellana HOM05D001216 ORTHO05D008355 5.4e-41 170.6 88 88.6
Lalb_Chr16g0376611 Lupinus albus HOM05D001216 ORTHO05D008355 7.0e-41 170.2 88 87.5
PGR142G1409 Punica granatum HOM05D001216 ORTHO05D008355 9.2e-41 169.9 88 86.4
Cfa015879 Carpinus fangiana HOM05D001216 ORTHO05D008355 1.2e-40 169.5 88 87.5
Aqoxy7G00876 Aquilegia oxysepala HOM05D001216 ORTHO05D008355 1.6e-40 169.1 88 87.5
Rhsim03G0220900 Rhododendron simsii HOM05D001216 ORTHO05D008355 1.6e-40 169.1 88 84.1
vmacro06504 Vaccinium macrocarpon HOM05D001216 ORTHO05D008355 1.6e-40 169.1 88 85.2
FvH4_7g33820 Fragaria vesca HOM05D001216 ORTHO05D008355 2.0e-40 168.7 88 86.4
FAN10G1381 Fragaria x ananassa HOM05D001216 ORTHO05D008355 2.0e-40 168.7 88 86.4
Potri.013G089000 Populus trichocarpa HOM05D001216 ORTHO05D008355 2.0e-40 168.7 88 86.4
TAR374G0425 Trochodendron aralioides HOM05D001216 ORTHO05D008355 2.0e-40 168.7 88 84.1
Actinidia08740 Actinidia chinensis HOM05D001216 ORTHO05D008355 2.7e-40 168.3 88 85.2
Nn1g01970 Nelumbo nucifera HOM05D001216 ORTHO05D008355 2.7e-40 168.3 88 87.5
QL09p024751 Quercus lobata HOM05D001216 ORTHO05D008355 2.7e-40 168.3 89 89.9
GSVIVG01024422001 Vitis vinifera HOM05D001216 ORTHO05D008355 2.7e-40 168.3 88 87.5
FAN01G2135 Fragaria x ananassa HOM05D001216 ORTHO05D008355 3.5e-40 167.9 88 85.2
MD07G1306500 Malus domestica HOM05D001216 ORTHO05D008355 3.5e-40 167.9 88 84.1
Ca_24450_v3 Cicer arietinum L. HOM05D001216 ORTHO05D008355 4.6e-40 167.5 88 86.4
Nitab4.5_0000021g0450 Nicotiana tabacum HOM05D001216 ORTHO05D008355 4.6e-40 167.5 88 83.0
Oeu061067.1 Olea europaea HOM05D001216 ORTHO05D008355 7.8e-40 166.8 88 83.0
VMungo1215G2356 Vigna mungo HOM05D001216 ORTHO05D008355 7.8e-40 166.8 88 86.4
Actinidia34302 Actinidia chinensis HOM05D001216 ORTHO05D008355 1.0e-39 166.4 88 83.0
Lsat_1_v5_gn_2_135361 Lactuca sativa HOM05D001216 ORTHO05D008355 1.0e-39 166.4 88 83.0
Lj3C889T5 Lonicera japonica HOM05D001216 ORTHO05D008355 1.0e-39 166.4 88 83.0
SalBow2G2269 Salvia bowleyana HOM05D001216 ORTHO05D008355 1.0e-39 166.4 88 84.1
CANSAT21G1267 Cannabis sativa HOM05D001216 ORTHO05D008355 1.7e-39 165.6 88 85.2
MSTRG.8578 Avicennia marina HOM05D001216 ORTHO05D008355 3.0e-39 164.9 88 81.8
Solyc03g096900.4 Solanum lycopersicum HOM05D001216 ORTHO05D008355 3.0e-39 164.9 88 81.8
Sopen03g027650 Solanum pennellii HOM05D001216 ORTHO05D008355 3.0e-39 164.9 88 81.8
CiPaw.05G238500 Carya illinoinensis HOM05D001216 ORTHO05D008355 3.9e-39 164.5 88 85.2
Sabra13G0069500 Salix brachista HOM05D001216 ORTHO05D008355 3.9e-39 164.5 88 84.1
TPR.G37925 Trifolium pratense HOM05D001216 ORTHO05D008355 3.9e-39 164.5 88 85.2
RcHm_v2.0_Chr1g0383931 Rosa chinensis HOM05D001216 ORTHO05D008355 5.0e-39 164.1 88 84.1
Peaxi162Scf00745g00860 Petunia axillaris HOM05D001216 ORTHO05D008355 6.6e-39 163.7 88 81.8
DCAR_010546 Daucus carota HOM05D001216 ORTHO05D008355 8.6e-39 163.3 88 81.8
Migut.F00951 Erythranthe guttata HOM05D001216 ORTHO05D008355 8.6e-39 163.3 88 80.7
Hma1.2p1_1235F.1_g269080 Hydrangea macrophylla HOM05D001216 ORTHO05D008355 1.1e-38 162.9 88 84.1
MBI04_g37552_MAGBIO Magnolia biondii HOM05D001216 ORTHO05D008355 1.1e-38 162.9 88 83.0
ClCG10G009060 Citrullus lanatus HOM05D001216 ORTHO05D008355 1.5e-38 162.5 88 83.0
Duzib106G0833 Durio zibethinus HOM05D001216 ORTHO05D008355 1.5e-38 162.5 87 81.6
Gorai.013G181000 Gossypium raimondii HOM05D001216 ORTHO05D008355 1.5e-38 162.5 87 82.8
Glyma.01G229200 Glycine max HOM05D001216 ORTHO05D008355 2.5e-38 161.8 88 84.1
ATR0829G059 Amborella trichopoda HOM05D001216 ORTHO05D008355 3.3e-38 161.4 88 80.7
CDE02G4784 Ceratophyllum demersum HOM05D001216 ORTHO05D008355 4.3e-38 161.0 88 84.1
Cc02_g00370 Coffea canephora HOM05D001216 ORTHO05D008355 4.3e-38 161.0 88 80.7
MELO3C024870.2 Cucumis melo HOM05D001216 ORTHO05D008355 4.3e-38 161.0 88 81.8
CsaV3_4G008710 Cucumis sativus L. HOM05D001216 ORTHO05D008355 4.3e-38 161.0 88 81.8
Psat0s769g0040 Pisum sativum HOM05D001216 ORTHO05D008355 4.3e-38 161.0 88 84.1
CDE11G0509 Ceratophyllum demersum HOM05D001216 ORTHO05D008355 7.3e-38 160.2 88 81.8
Medtr5g007870 Medicago truncatula HOM05D001216 ORTHO05D008355 7.3e-38 160.2 88 84.1
Sc25g0001170 Simmondsia chinensis HOM05D001216 ORTHO05D008355 1.2e-37 159.5 88 80.7
Sed0005129 Sechium edule HOM05D001216 ORTHO05D008355 2.8e-37 158.3 88 81.8
unitig_52.g16852 Utricularia gibba HOM05D001216 ORTHO05D008355 2.8e-37 158.3 88 78.4
LjContig00222g0021656 Lotus japonicus HOM05D001216 ORTHO05D008355 1.8e-36 155.6 87 80.5
HanXRQChr14g0462961 Helianthus annuus HOM05D001216 ORTHO05D008355 3.1e-36 154.8 88 77.3
arahy.Tifrunner.gnm1.ann1.4MFR3H Arachis hypogaea HOM05D001216 ORTHO05D008355 5.2e-36 154.1 108 67.6
PSO675G9306 Papaver somniferum HOM05D001216 ORTHO05D008355 2.6e-35 151.8 88 78.4
AUR62005907 Chenopodium quinoa HOM05D001216 ORTHO05D008355 3.4e-35 151.4 88 75.0
AUR62028160 Chenopodium quinoa HOM05D001216 ORTHO05D008355 3.4e-35 151.4 88 75.0
EL10Ac3g05091 Beta vulgaris HOM05D001216 ORTHO05D008355 5.8e-35 150.6 88 75.0
SGA_v2.0_scaffold59G20777 Striga asiatica HOM05D001216 ORTHO05D008355 1.7e-34 149.1 100 71.0
Zm00001eb188060 Zea mays HOM05D001216 ORTHO05D008355 1.4e-33 146.0 88 72.7
SEGI_15200 Sequoiadendron giganteum HOM05D001216 ORTHO05D008355 3.2e-33 144.8 88 73.9
Hund21095 Selenicereus undatus HOM05D008000 ORTHO05D010275 4.1e-33 144.4 85 74.1
ECA238G0596 Erigeron canadensis HOM05D001216 ORTHO05D008355 7.8e-32 140.2 97 69.1
Actinidia04569 Actinidia chinensis HOM05D001216 ORTHO05D008355 3.1e-28 128.3 87 69.0
Dinv29167 Davidia involucrata HOM05D001216 ORTHO05D008355 3.1e-28 128.3 69 82.6
arahy.Tifrunner.gnm1.ann1.LQ97JF Arachis hypogaea HOM05D001216 ORTHO05D008355 3.4e-27 124.8 101 62.4
Nitab4.5_0005081g0010 Nicotiana tabacum HOM05D001216 ORTHO05D008355 1.4e-25 119.4 64 79.7
Glyma.11G012000 Glycine max HOM05D001216 ORTHO05D008355 4.1e-25 117.9 61 86.9
ECA083G0001 Erigeron canadensis HOM05D001216 ORTHO05D000001 1.1e-22 109.8 81 65.4
Mapoly0035s0150 Marchantia polymorpha HOM05D001216 ORTHO05D008355 5.2e-20 100.9 89 55.1
Atru.chr12.1986 Acer truncatum HOM05D001216 ORTHO05D008355 1.9e-17 92.4 45 91.1
Pp3c16_11940 Physcomitrium patens HOM05D001216 ORTHO05D008355 1.2e-16 89.7 62 62.9
Prupe.2G324500 Prunus persica HOM05D001216 ORTHO05D008355 1.2e-16 89.7 45 86.7
Thecc.05G209300 Theobroma cacao HOM05D001216 ORTHO05D008355 4.6e-16 87.8 45 86.7
CAN.G303.74 Capsicum annuum HOM05D001216 ORTHO05D008355 8.7e-15 83.6 45 75.6
Duzib177G0258 Durio zibethinus HOM05D001216 ORTHO05D008355 1.4e-12 76.3 44 75.0
MCO15G413 Micromonas commoda HOM05D001216 ORTHO05D008355 1.4e-12 76.3 66 48.5
Ah.13g072640 Amaranthus hybridus HOM05D001216 ORTHO05D008355 1.2e-11 73.2 44 72.7
SEGI_10998 Sequoiadendron giganteum HOM05D001216 ORTHO05D008355 1.5e-11 72.8 37 83.8
PRCOL_00001354 Prasinoderma coloniale HOM05D001216 ORTHO05D008355 1.7e-10 69.3 57 52.6
Cre14.g621351 Chlamydomonas reinhardtii HOM05D001216 ORTHO05D008355 1.6e-08 62.8 79 44.3
Phvul.002G038200 Phaseolus vulgaris HOM05D001216 ORTHO05D008355 3.5e-08 61.6 28 92.9
CDE05G3664 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 6.0e-08 60.8 61 49.2
SEGI_30947 Sequoiadendron giganteum HOM05D001216 ORTHO05D003822 8.7e-07 57.0 67 41.8
Lj5A36T82 Lonicera japonica HOM05D001216 ORTHO05D003822 1.9e-06 55.8 58 48.3
AL3G26250 Arabidopsis lyrata HOM05D001216 ORTHO05D003822 2.5e-06 55.5 49 51.0
CDE04G2782 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 2.5e-06 55.5 49 51.0
ECA247G4000 Erigeron canadensis HOM05D001216 ORTHO05D003822 2.5e-06 55.5 43 55.8
CDE06G0396 Ceratophyllum demersum HOM05D001216 ORTHO05D003822 3.3e-06 55.1 49 51.0
Gohir.A10G053700 Gossypium hirsutum HOM05D001216 ORTHO05D003822 3.3e-06 55.1 88 35.2
HanXRQChr04g0094711 Helianthus annuus HOM05D001216 ORTHO05D003822 3.3e-06 55.1 45 53.3
AT1G54130 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 4.3e-06 54.7 43 55.8
Aa31LG8G1240 Aethionema arabicum HOM05D001216 ORTHO05D003822 5.6e-06 54.3 49 49.0
Carub.0003s1364 Capsella rubella HOM05D001216 ORTHO05D003822 5.6e-06 54.3 49 49.0
CARHR088880 Cardamine hirsuta HOM05D001216 ORTHO05D003822 5.6e-06 54.3 49 49.0
DCAR_016123 Daucus carota HOM05D001216 ORTHO05D003822 5.6e-06 54.3 49 51.0
Thhalv10020161m.g Eutrema salsugineum HOM05D001216 ORTHO05D003822 5.6e-06 54.3 49 49.0
Sp3g12290 Schrenkiella parvula HOM05D001216 ORTHO05D003822 5.6e-06 54.3 49 49.0
Aa31LG10G1280 Aethionema arabicum HOM05D001216 ORTHO05D003822 7.3e-06 53.9 49 49.0
BolC6t36753H Brassica oleracea HOM05D001216 ORTHO05D003822 7.3e-06 53.9 49 49.0
CARHR044480 Cardamine hirsuta HOM05D001216 ORTHO05D003822 7.3e-06 53.9 49 49.0
Gorai.011G059200 Gossypium raimondii HOM05D001216 ORTHO05D003822 7.3e-06 53.9 87 34.5
HanXRQChr09g0276921 Helianthus annuus HOM05D001216 ORTHO05D003822 7.3e-06 53.9 43 55.8
Lsat_1_v5_gn_1_38241 Lactuca sativa HOM05D001216 ORTHO05D003822 7.3e-06 53.9 45 53.3
Manes.04G145500 Manihot esculenta HOM05D001216 ORTHO05D003822 7.3e-06 53.9 49 49.0
Peaxi162Scf00038g02114 Petunia axillaris HOM05D001216 ORTHO05D003822 7.3e-06 53.9 49 51.0
AT3G14050 Arabidopsis thaliana HOM05D001216 ORTHO05D003822 9.6e-06 53.5 49 49.0
BcaC08g44164 Brassica carinata HOM05D001216 ORTHO05D003822 9.6e-06 53.5 49 49.0
Gohir.D10G055500 Gossypium hirsutum HOM05D001216 ORTHO05D003822 9.6e-06 53.5 87 34.5
Nitab4.5_0004422g0050 Nicotiana tabacum HOM05D001216 ORTHO05D003822 9.6e-06 53.5 49 51.0
Nitab4.5_0007255g0010 Nicotiana tabacum HOM05D001216 ORTHO05D003822 9.6e-06 53.5 49 51.0
Zm00001eb327320 Zea mays HOM05D001216 ORTHO05D003822 9.6e-06 53.5 58 41.4


User provided reference genes

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