Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 1.3e-238 829.3 425 100.0
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 3.2e-136 489.2 424 63.2
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 6.7e-134 481.5 426 62.2
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.2e-132 476.5 425 61.9
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 5.9e-130 468.4 424 61.6
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.4e-126 457.2 424 60.6
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.2e-125 454.1 425 60.2
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 1.2e-125 454.1 423 58.6
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 1.5e-125 453.8 425 60.5
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 4.4e-125 452.2 433 60.5
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 1.3e-124 450.7 423 58.9
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.7e-124 450.3 426 58.5
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 1.7e-124 450.3 423 58.4
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 2.2e-124 449.9 423 59.8
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 2.8e-124 449.5 420 59.5
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 6.3e-124 448.4 425 57.9
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 1.4e-123 447.2 432 58.3
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 1.4e-123 447.2 424 57.3
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 1.8e-123 446.8 423 57.0
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 3.1e-123 446.0 423 58.9
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 4.1e-123 445.7 424 58.7
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 5.3e-123 445.3 423 57.7
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 5.3e-123 445.3 420 60.0
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 1.2e-122 444.1 425 61.2
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.6e-122 443.7 423 58.2
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.0e-122 443.4 423 58.2
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 2.7e-122 443.0 423 58.4
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 4.5e-122 442.2 433 56.6
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 1.3e-121 440.7 424 56.6
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 2.9e-121 439.5 424 59.0
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 2.9e-121 439.5 423 57.2
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 3.8e-121 439.1 423 56.7
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 3.8e-121 439.1 424 58.5
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 8.5e-121 438.0 423 57.0
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.5e-120 437.2 422 56.9
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 5.5e-120 435.3 423 57.7
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 7.2e-120 434.9 391 62.4
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 9.4e-120 434.5 424 56.1
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 1.6e-119 433.7 423 56.5
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 3.6e-119 432.6 423 56.5
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 8.0e-119 431.4 424 56.4
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 1.0e-118 431.0 423 56.3
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 1.8e-118 430.3 425 57.6
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 3.0e-118 429.5 425 56.5
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 4.0e-118 429.1 423 57.2
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 4.0e-118 429.1 423 54.6
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 5.2e-118 428.7 424 55.0
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 6.8e-118 428.3 423 56.5
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 2.0e-117 426.8 423 57.2
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 2.6e-117 426.4 426 55.4
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 4.4e-117 425.6 423 55.6
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 1.3e-116 424.1 424 56.8
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.7e-116 423.7 423 55.3
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 2.8e-116 422.9 401 61.6
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 8.3e-116 421.4 424 56.4
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 1.1e-115 421.0 423 54.8
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 3.5e-114 416.0 423 55.8
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 5.9e-114 415.2 423 54.6
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 5.9e-114 415.2 423 55.8
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 7.7e-114 414.8 426 54.7
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 7.7e-114 414.8 424 56.4
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 4.2e-112 409.1 426 54.9
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 9.5e-112 407.9 424 53.8
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 1.2e-111 407.5 426 54.7
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.6e-111 407.1 426 54.9
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 2.8e-111 406.4 426 54.7
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 3.0e-110 402.9 420 54.5
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 8.9e-110 401.4 390 58.5
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 3.4e-109 399.4 423 53.7
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 2.2e-108 396.7 423 53.2
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 1.1e-107 394.4 425 52.5
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 1.2e-106 391.0 422 51.7
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 8.6e-105 384.8 424 52.4
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 8.0e-103 378.3 424 51.2
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 5.2e-102 375.6 410 53.9
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 7.5e-101 371.7 425 51.8
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 8.3e-100 368.2 423 50.8
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 3.2e-99 366.3 426 49.3
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 3.5e-98 362.8 427 49.9
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 2.8e-95 353.2 249 71.9
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 4.7e-95 352.4 425 48.2
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 8.0e-95 351.7 249 73.1
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 1.4e-94 350.9 254 70.1
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 4.0e-94 349.4 423 46.8
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 1.3e-92 344.4 250 72.0
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 2.2e-92 343.6 249 70.7
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 8.3e-92 341.7 254 70.1
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 3.2e-91 339.7 256 68.4
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 3.5e-90 336.3 390 49.2
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 7.8e-90 335.1 413 49.2
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 1.3e-89 334.3 249 70.7
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 8.6e-89 331.6 389 48.8
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 2.1e-87 327.0 434 43.8
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 9.9e-85 318.2 294 58.8
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 2.1e-82 310.5 424 45.5
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 3.0e-81 306.6 230 68.3
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 7.3e-80 302.0 424 45.5
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 5.2e-78 295.8 249 61.4
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 1.5e-69 267.7 427 39.8
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 2.9e-68 263.5 426 39.7
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 6.4e-68 262.3 423 40.7
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 5.4e-67 259.2 245 55.1
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 5.3e-54 216.1 424 35.6
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 6.9e-54 215.7 314 40.1
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.2e-53 214.9 368 40.2
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 9.7e-40 168.7 211 44.1
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 8.2e-39 165.6 115 73.0
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 3.0e-33 147.1 136 55.1
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 4.1e-30 136.7 90 76.7
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 3.4e-29 133.7 102 65.7
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 7.7e-29 132.5 99 68.7
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.3e-28 131.7 258 36.0
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 2.1e-26 124.4 99 57.6
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 3.0e-25 120.6 254 34.6
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 1.7e-23 114.8 99 62.6
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.8e-23 114.0 198 38.9
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 3.1e-22 110.5 97 59.8
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.2e-21 108.6 99 59.6
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 2.0e-21 107.8 99 52.5
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 1.3e-20 105.1 234 30.3
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.9e-11 74.7 66 48.5
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.1e-10 71.2 51 60.8
BcaB04g20162 Brassica carinata HOM05D001340 ORTHO05D005342 1.8e-09 68.2 130 36.2
BcaC09g49556 Brassica carinata HOM05D001340 ORTHO05D005342 3.0e-09 67.4 130 36.2
Sp2g06370 Schrenkiella parvula HOM05D001340 ORTHO05D005342 5.2e-09 66.6 130 35.4
CARHR055170 Cardamine hirsuta HOM05D001340 ORTHO05D005342 2.0e-08 64.7 130 34.6
AL1G66140 Arabidopsis lyrata HOM05D001340 ORTHO05D005342 3.4e-08 63.9 130 34.6
AT1G56440 Arabidopsis thaliana HOM05D001340 ORTHO05D005342 3.4e-08 63.9 130 33.8
BcaC02g10729 Brassica carinata HOM05D001340 ORTHO05D005342 3.4e-08 63.9 130 34.6
Thhalv10023436m.g Eutrema salsugineum HOM05D001340 ORTHO05D005342 2.8e-07 60.8 173 30.1
A01p27480 Brassica napus HOM05D001340 ORTHO05D005342 3.7e-07 60.5 130 36.2
BraA01t02887Z Brassica rapa HOM05D001340 ORTHO05D005342 3.7e-07 60.5 130 36.2
Sc05g0002580 Simmondsia chinensis HOM05D006210 ORTHO05D007510 6.3e-07 59.7 94 37.2
C01p35320 Brassica napus HOM05D001340 ORTHO05D005342 1.1e-06 58.9 130 35.4
BolC1t03489H Brassica oleracea HOM05D001340 ORTHO05D005342 1.1e-06 58.9 130 35.4
BraA03t15714Z Brassica rapa HOM05D001340 ORTHO05D005342 1.8e-06 58.2 130 34.6
Gohir.D11G283800 Gossypium hirsutum HOM05D001340 ORTHO05D005342 1.8e-06 58.2 159 30.8
Gorai.007G306700 Gossypium raimondii HOM05D001340 ORTHO05D005342 1.8e-06 58.2 159 30.8
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 2.4e-06 57.8 128 34.4
Ah.04g158660 Amaranthus hybridus HOM05D001340 ORTHO05D005342 4.1e-06 57.0 157 29.9
Gohir.A11G273700 Gossypium hirsutum HOM05D001340 ORTHO05D005342 5.3e-06 56.6 118 33.9
Potri.005G014100 Populus trichocarpa HOM05D001340 ORTHO05D005342 9.1e-06 55.8 130 32.3


User provided reference genes

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