Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc862.6 Carica papaya HOM05D004424 ORTHO05D026959 3.3e-53 211.5 109 100.0
Carub.0007s3488 Capsella rubella HOM05D004424 ORTHO05D005476 2.0e-26 122.5 115 63.5
BcaC08g44470 Brassica carinata HOM05D004424 ORTHO05D005476 1.1e-24 116.7 109 65.1
C06p19220 Brassica napus HOM05D004424 ORTHO05D005476 1.1e-24 116.7 109 65.1
BolC6t37118H Brassica oleracea HOM05D004424 ORTHO05D005476 1.1e-24 116.7 109 65.1
BraA07t29735Z Brassica rapa HOM05D004424 ORTHO05D005476 2.5e-24 115.5 109 62.4
Thhalv10027824m.g Eutrema salsugineum HOM05D004424 ORTHO05D005476 5.5e-24 114.4 106 63.2
AL7G49190 Arabidopsis lyrata HOM05D004424 ORTHO05D005476 9.5e-24 113.6 116 58.6
AT5G40610 Arabidopsis thaliana HOM05D004424 ORTHO05D005476 9.5e-24 113.6 115 60.0
PGR083G2343 Punica granatum HOM05D004424 ORTHO05D005476 3.6e-23 111.7 61 88.5
A07p20340 Brassica napus HOM05D004424 ORTHO05D005476 4.7e-23 111.3 111 60.4
BcaB02g07939 Brassica carinata HOM05D004424 ORTHO05D005476 1.0e-22 110.2 110 62.7
CARHR261350 Cardamine hirsuta HOM05D004424 ORTHO05D005476 1.8e-22 109.4 107 59.8
THA.LOC104825312 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 2.3e-22 109.0 76 72.4
VMungo0464G1386 Vigna mungo HOM05D004424 ORTHO05D005476 2.3e-22 109.0 88 67.0
Manes.15G153800 Manihot esculenta HOM05D004424 ORTHO05D005476 5.2e-22 107.8 128 60.2
CANSAT64G1206 Cannabis sativa HOM05D004424 ORTHO05D005476 6.8e-22 107.5 80 70.0
Ciclev10015567m.g Citrus clementina HOM05D004424 ORTHO05D005476 6.8e-22 107.5 84 70.2
BcaC06g31931 Brassica carinata HOM05D004424 ORTHO05D026959 8.9e-22 107.1 61 83.6
RhsimUnG0005500 Rhododendron simsii HOM05D004424 ORTHO05D005476 2.0e-21 105.9 75 72.0
RhsimUnG0088000 Rhododendron simsii HOM05D004424 ORTHO05D005476 2.0e-21 105.9 75 72.0
THA.LOC104805357 Tarenaya hassleriana HOM05D004424 ORTHO05D005476 2.0e-21 105.9 99 64.6
TWI56G0533 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 2.0e-21 105.9 73 76.7
Haze_14780 Corylus avellana HOM05D004424 ORTHO05D005476 2.6e-21 105.5 100 61.0
COL.COLO4_29204 Corchorus olitorius HOM05D004424 ORTHO05D005476 3.4e-21 105.1 66 78.8
Lj2g0008128 Lotus japonicus HOM05D004424 ORTHO05D005476 3.4e-21 105.1 67 77.6
Nitab4.5_0004496g0010 Nicotiana tabacum HOM05D004424 ORTHO05D005476 3.4e-21 105.1 95 57.9
Sp7g01260 Schrenkiella parvula HOM05D004424 ORTHO05D005476 3.4e-21 105.1 65 75.4
PGSC0003DMG400006965 Solanum tuberosum HOM05D004424 ORTHO05D005476 3.4e-21 105.1 58 86.2
Lju41A44T88 Lonicera japonica HOM05D004424 ORTHO05D005476 4.4e-21 104.8 68 75.0
TAR629G0173 Trochodendron aralioides HOM05D004424 ORTHO05D005476 4.4e-21 104.8 57 87.7
Aa31LG9G1010 Aethionema arabicum HOM05D004424 ORTHO05D005476 5.7e-21 104.4 112 58.0
arahy.Tifrunner.gnm1.ann1.SWZ6KM Arachis hypogaea HOM05D004424 ORTHO05D005476 5.7e-21 104.4 62 82.3
MD09G1020100 Malus domestica HOM05D004424 ORTHO05D005476 5.7e-21 104.4 118 56.8
MD17G1020700 Malus domestica HOM05D004424 ORTHO05D005476 5.7e-21 104.4 122 56.6
Sopen02g017050 Solanum pennellii HOM05D004424 ORTHO05D005476 5.7e-21 104.4 58 84.5
Aqoxy3G01375 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 7.5e-21 104.0 75 73.3
Cfa007312 Carpinus fangiana HOM05D004424 ORTHO05D005476 7.5e-21 104.0 101 60.4
Lj7A603T68 Lonicera japonica HOM05D004424 ORTHO05D005476 7.5e-21 104.0 107 57.9
Psat1g081600 Pisum sativum HOM05D004424 ORTHO05D005476 7.5e-21 104.0 80 67.5
Solyc02g067930.3 Solanum lycopersicum HOM05D004424 ORTHO05D005476 7.5e-21 104.0 58 84.5
vmacro05893 Vaccinium macrocarpon HOM05D004424 ORTHO05D005476 7.5e-21 104.0 71 76.1
Lsat_1_v5_gn_4_184601 Lactuca sativa HOM05D004424 ORTHO05D005476 9.8e-21 103.6 74 73.0
Nitab4.5_0000040g0610 Nicotiana tabacum HOM05D004424 ORTHO05D005476 9.8e-21 103.6 95 57.9
Phvul.004G059500 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 9.8e-21 103.6 57 87.7
Atru.chr6.2455 Acer truncatum HOM05D004424 ORTHO05D005476 1.3e-20 103.2 57 86.0
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.3e-20 103.2 59 79.7
BolC4t26343H Brassica oleracea HOM05D004424 ORTHO05D005476 1.3e-20 103.2 59 79.7
Phvul.008G160800 Phaseolus vulgaris HOM05D004424 ORTHO05D005476 1.3e-20 103.2 54 88.9
Psat3g172960 Pisum sativum HOM05D004424 ORTHO05D005476 1.3e-20 103.2 56 85.7
RcHm_v2.0_Chr2g0173621 Rosa chinensis HOM05D004424 ORTHO05D005476 1.3e-20 103.2 105 58.1
TWI36G0116 Tripterygium wilfordii HOM05D004424 ORTHO05D005476 1.3e-20 103.2 129 55.0
Dinv33406 Davidia involucrata HOM05D004424 ORTHO05D005476 1.7e-20 102.8 108 56.5
Thecc.04G022600 Theobroma cacao HOM05D004424 ORTHO05D005476 1.7e-20 102.8 125 54.4
CAN.G1057.16 Capsicum annuum HOM05D004424 ORTHO05D005476 2.2e-20 102.4 58 84.5
Ca_04390_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 2.2e-20 102.4 57 84.2
Duzib264G0829 Durio zibethinus HOM05D004424 ORTHO05D005476 2.2e-20 102.4 142 52.8
Eucgr.J02265 Eucalyptus grandis HOM05D004424 ORTHO05D005476 2.2e-20 102.4 75 72.0
Glyma.19G053500 Glycine max HOM05D004424 ORTHO05D005476 2.2e-20 102.4 57 87.7
MD17G1020500 Malus domestica HOM05D004424 ORTHO05D005476 2.2e-20 102.4 57 86.0
Oeu054644.1 Olea europaea HOM05D004424 ORTHO05D005476 2.2e-20 102.4 63 79.4
PSO478G4959 Papaver somniferum HOM05D004424 ORTHO05D005476 2.2e-20 102.4 58 81.0
Prupe.3G296200 Prunus persica HOM05D004424 ORTHO05D005476 2.2e-20 102.4 92 62.0
arahy.Tifrunner.gnm1.ann1.E7CAJ8 Arachis hypogaea HOM05D004424 ORTHO05D005476 2.8e-20 102.1 57 86.0
Duzib264G0567 Durio zibethinus HOM05D004424 ORTHO05D005476 2.8e-20 102.1 140 52.1
FAN14G4625 Fragaria x ananassa HOM05D004424 ORTHO05D005476 2.8e-20 102.1 124 53.2
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 3.7e-20 101.7 59 78.0
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 3.7e-20 101.7 59 78.0
FAN02G2704 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.9e-20 101.3 108 58.3
FAN05G4460 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.9e-20 101.3 58 81.0
FAN09G1365 Fragaria x ananassa HOM05D004424 ORTHO05D005476 4.9e-20 101.3 108 58.3
Glyma.05G114350 Glycine max HOM05D004424 ORTHO05D005476 4.9e-20 101.3 57 86.0
Gorai.006G036200 Gossypium raimondii HOM05D004424 ORTHO05D005476 4.9e-20 101.3 135 51.9
Medtr6g021915 Medicago truncatula HOM05D004424 ORTHO05D005476 4.9e-20 101.3 65 75.4
Cc07_g00150 Coffea canephora HOM05D004424 ORTHO05D005476 6.3e-20 100.9 87 60.9
HanXRQChr09g0255531 Helianthus annuus HOM05D004424 ORTHO05D005476 6.3e-20 100.9 70 71.4
TPR.G21634 Trifolium pratense HOM05D004424 ORTHO05D005476 6.3e-20 100.9 57 82.5
Glyma.19G079400 Glycine max HOM05D004424 ORTHO05D005476 8.3e-20 100.5 54 88.9
Sed0023807 Sechium edule HOM05D004424 ORTHO05D005476 8.3e-20 100.5 119 54.6
Actinidia36142 Actinidia chinensis HOM05D004424 ORTHO05D005476 1.1e-19 100.1 109 56.9
Ca_05240_v3 Cicer arietinum L. HOM05D004424 ORTHO05D005476 1.1e-19 100.1 54 87.0
Gohir.A09G031100 Gossypium hirsutum HOM05D004424 ORTHO05D005476 1.1e-19 100.1 136 50.7
Potri.017G070900 Populus trichocarpa HOM05D004424 ORTHO05D005476 1.1e-19 100.1 56 85.7
Actinidia05960 Actinidia chinensis HOM05D004424 ORTHO05D005476 1.4e-19 99.8 105 58.1
FAN09G1353 Fragaria x ananassa HOM05D004424 ORTHO05D005476 1.4e-19 99.8 58 81.0
PSO478G3400 Papaver somniferum HOM05D004424 ORTHO05D005476 1.4e-19 99.8 58 79.3
CSS0006863 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 1.8e-19 99.4 74 67.6
CSS0021502 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 1.8e-19 99.4 74 67.6
ClCG09G019460 Citrullus lanatus HOM05D004424 ORTHO05D005476 1.8e-19 99.4 126 52.4
PSO578G0012 Papaver somniferum HOM05D004424 ORTHO05D005476 1.8e-19 99.4 58 79.3
QL02p073533 Quercus lobata HOM05D004424 ORTHO05D005476 1.8e-19 99.4 56 85.7
SGA_v2.0_scaffold18G08249 Striga asiatica HOM05D004424 ORTHO05D005476 1.8e-19 99.4 57 84.2
TPR.G1131 Trifolium pratense HOM05D004424 ORTHO05D005476 1.8e-19 99.4 54 85.2
Migut.K01420 Erythranthe guttata HOM05D004424 ORTHO05D005476 2.4e-19 99.0 57 84.2
Lalb_Chr24g0403451 Lupinus albus HOM05D004424 ORTHO05D005476 3.1e-19 98.6 54 87.0
PSO063G2103 Papaver somniferum HOM05D004424 ORTHO05D005476 3.1e-19 98.6 65 73.8
MSTRG.24051 Avicennia marina HOM05D004424 ORTHO05D005476 4.1e-19 98.2 64 78.1
CiPaw.04G031400 Carya illinoinensis HOM05D004424 ORTHO05D026959 4.1e-19 98.2 71 71.8
DCAR_011275 Daucus carota HOM05D004424 ORTHO05D005476 4.1e-19 98.2 57 82.5
ECA232G4437 Erigeron canadensis HOM05D004424 ORTHO05D005476 7.0e-19 97.4 54 85.2
Hma1.2p1_0818F.1_g223410 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 7.0e-19 97.4 58 79.3
arahy.Tifrunner.gnm1.ann1.75451B Arachis hypogaea HOM05D004424 ORTHO05D005476 9.2e-19 97.1 57 80.7
Gorai.012G066600 Gossypium raimondii HOM05D004424 ORTHO05D005476 9.2e-19 97.1 70 67.1
GSVIVG01003989001 Vitis vinifera HOM05D004424 ORTHO05D005476 9.2e-19 97.1 79 64.6
CSS0022745 Camellia sinensis var. sinensis HOM05D004424 ORTHO05D005476 1.2e-18 96.7 57 78.9
MELO3C021604.2 Cucumis melo HOM05D004424 ORTHO05D005476 1.2e-18 96.7 126 52.4
CsaV3_5G026900 Cucumis sativus L. HOM05D004424 ORTHO05D005476 1.2e-18 96.7 126 52.4
DCAR_021744 Daucus carota HOM05D004424 ORTHO05D005476 1.2e-18 96.7 55 81.8
Lalb_Chr22g0360631 Lupinus albus HOM05D004424 ORTHO05D005476 1.2e-18 96.7 96 56.2
Medtr7g032630 Medicago truncatula HOM05D004424 ORTHO05D005476 1.6e-18 96.3 54 81.5
ATR0824G013 Amborella trichopoda HOM05D004424 ORTHO05D005476 2.0e-18 95.9 63 73.0
Gohir.D09G031300 Gossypium hirsutum HOM05D004424 ORTHO05D005476 2.0e-18 95.9 135 50.4
Aqoxy3G01300 Aquilegia oxysepala HOM05D004424 ORTHO05D005476 4.5e-18 94.7 71 66.2
Lj1g0018666 Lotus japonicus HOM05D004424 ORTHO05D005476 4.5e-18 94.7 54 81.5
BcaB06g27537 Brassica carinata HOM05D004424 ORTHO05D005476 5.9e-18 94.4 59 74.6
AUR62035520 Chenopodium quinoa HOM05D004424 ORTHO05D005476 7.8e-18 94.0 54 81.5
AUR62041297 Chenopodium quinoa HOM05D004424 ORTHO05D005476 7.8e-18 94.0 54 81.5
CiPaw.03G047600 Carya illinoinensis HOM05D004424 ORTHO05D005476 1.0e-17 93.6 104 54.8
HPP92_021439 Vanilla planifolia HOM05D004424 ORTHO05D005476 1.3e-17 93.2 54 81.5
Ah.04g162770 Amaranthus hybridus HOM05D004424 ORTHO05D005476 2.3e-17 92.4 54 77.8
HPP92_027100 Vanilla planifolia HOM05D004424 ORTHO05D005476 2.9e-17 92.0 54 79.6
Os01g0971600 Oryza sativa ssp. japonica HOM05D004424 ORTHO05D005476 1.1e-16 90.1 62 64.5
Hma1.2p1_0279F.1_g111990 Hydrangea macrophylla HOM05D004424 ORTHO05D005476 1.5e-16 89.7 50 86.0
SEGI_10400 Sequoiadendron giganteum HOM05D004424 ORTHO05D005476 1.9e-16 89.4 59 69.5
Peaxi162Scf00080g01518 Petunia axillaris HOM05D004424 ORTHO05D005476 3.3e-16 88.6 51 80.4
SMO244G0041 Selaginella moellendorffii HOM05D004424 ORTHO05D005476 9.5e-16 87.0 55 76.4
Zm00001eb139850 Zea mays HOM05D004424 ORTHO05D005476 1.2e-15 86.7 62 64.5
Pp3c15_11110 Physcomitrium patens HOM05D004424 ORTHO05D005476 1.8e-14 82.8 72 55.6
Hund06842 Selenicereus undatus HOM05D004424 ORTHO05D005476 3.0e-14 82.0 54 74.1
Sc16g0003770 Simmondsia chinensis HOM05D004424 ORTHO05D005476 3.0e-14 82.0 54 70.4
Mapoly0218s0007 Marchantia polymorpha HOM05D004424 ORTHO05D005476 4.4e-13 78.2 62 58.1
Oeu050453.1 Olea europaea HOM05D004424 ORTHO05D005476 4.1e-11 71.6 57 68.4
EL10Ac4g08826 Beta vulgaris HOM05D004424 ORTHO05D005476 1.9e-08 62.8 75 45.3
Cfa026705 Carpinus fangiana HOM05D004424 ORTHO05D005476 3.6e-07 58.5 69 44.9
RhsimUnG0005600 Rhododendron simsii HOM05D004424 ORTHO05D005476 6.2e-07 57.8 49 63.3
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.0e-06 55.1 60 50.0


User provided reference genes

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