Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc86.55 Carica papaya HOM05D003589 ORTHO05D005170 5.5e-96 354.4 187 100.0
Duzib151G0965 Durio zibethinus HOM05D003589 ORTHO05D005170 5.0e-57 224.9 185 64.9
Dinv16976 Davidia involucrata HOM05D003589 ORTHO05D005170 7.5e-53 211.1 186 61.3
Thecc.04G151400 Theobroma cacao HOM05D003589 ORTHO05D005170 1.4e-51 206.8 184 58.7
Dinv25345 Davidia involucrata HOM05D003589 ORTHO05D005170 2.0e-50 203.0 186 58.1
Gohir.A10G150900 Gossypium hirsutum HOM05D003589 ORTHO05D005170 4.2e-48 195.3 187 58.3
Gohir.D10G115400 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.5e-48 194.9 187 56.7
Gorai.011G127100 Gossypium raimondii HOM05D003589 ORTHO05D005170 5.5e-48 194.9 187 56.7
TWI74G0182 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 9.4e-48 194.1 186 56.5
Atru.chr8.113 Acer truncatum HOM05D003589 ORTHO05D005170 3.6e-47 192.2 177 58.8
Ciclev10011425m.g Citrus clementina HOM05D003589 ORTHO05D005170 2.3e-46 189.5 177 55.9
Manes.09G118000 Manihot esculenta HOM05D003589 ORTHO05D005170 2.6e-45 186.0 184 52.7
TWI77G0120 Tripterygium wilfordii HOM05D003589 ORTHO05D005170 4.4e-45 185.3 185 55.1
Sc20g0006980 Simmondsia chinensis HOM05D003589 ORTHO05D005170 7.5e-45 184.5 175 57.7
Cfa017032 Carpinus fangiana HOM05D003589 ORTHO05D005170 2.2e-44 183.0 175 56.6
TAR633G1241 Trochodendron aralioides HOM05D003589 ORTHO05D005170 2.8e-44 182.6 187 55.1
Lalb_Chr01g0023761 Lupinus albus HOM05D003589 ORTHO05D005170 3.1e-43 179.1 175 56.6
Haze_21177 Corylus avellana HOM05D003589 ORTHO05D005170 4.1e-43 178.7 185 58.4
Actinidia20793 Actinidia chinensis HOM05D003589 ORTHO05D005170 9.1e-43 177.6 187 51.9
QL07p032102 Quercus lobata HOM05D003589 ORTHO05D005170 9.1e-43 177.6 195 53.8
Prupe.6G293800 Prunus persica HOM05D003589 ORTHO05D005170 1.6e-42 176.8 171 56.7
Lj1g0021012 Lotus japonicus HOM05D003589 ORTHO05D005170 4.5e-42 175.3 174 55.7
Potri.006G108400 Populus trichocarpa HOM05D003589 ORTHO05D005170 4.5e-42 175.3 175 52.6
ClCG10G022760 Citrullus lanatus HOM05D003589 ORTHO05D005170 5.9e-42 174.9 178 54.5
Potri.016G136900 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.9e-42 174.9 184 47.3
COL.COLO4_06483 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.0e-41 174.1 184 56.5
Nn5g26845 Nelumbo nucifera HOM05D003589 ORTHO05D005170 1.3e-41 173.7 179 52.0
THA.LOC104806162 Tarenaya hassleriana HOM05D003589 ORTHO05D005170 1.7e-41 173.3 193 54.9
Sabra06G0084600 Salix brachista HOM05D003589 ORTHO05D005170 2.9e-41 172.6 154 55.8
CiPaw.09G221500 Carya illinoinensis HOM05D003589 ORTHO05D005170 5.0e-41 171.8 155 60.0
FAN05G0190 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.6e-41 171.0 186 51.6
FAN05G1200 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.6e-41 171.0 186 51.6
FAN05G4521 Fragaria x ananassa HOM05D003589 ORTHO05D005170 8.6e-41 171.0 186 51.6
FAN02G1320 Fragaria x ananassa HOM05D003589 ORTHO05D005170 1.1e-40 170.6 186 51.1
Psat3g118720 Pisum sativum HOM05D003589 ORTHO05D005170 1.9e-40 169.9 184 50.5
FvH4_6g09850 Fragaria vesca HOM05D003589 ORTHO05D005170 2.5e-40 169.5 186 51.6
vmacro08941 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 2.5e-40 169.5 178 50.0
Eucgr.A00727 Eucalyptus grandis HOM05D003589 ORTHO05D005170 3.3e-40 169.1 175 54.9
Gohir.D02G003600 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.3e-40 169.1 189 51.3
Gorai.005G004100 Gossypium raimondii HOM05D003589 ORTHO05D005170 3.3e-40 169.1 189 51.3
TPR.G14123 Trifolium pratense HOM05D003589 ORTHO05D005170 3.3e-40 169.1 184 51.1
FAN14G2282 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.3e-40 168.7 186 51.6
Sabra04G0153600 Salix brachista HOM05D003589 ORTHO05D005170 4.3e-40 168.7 175 50.3
Gohir.A02G003200 Gossypium hirsutum HOM05D003589 ORTHO05D005170 5.6e-40 168.3 186 51.1
RcHm_v2.0_Chr3g0460451 Rosa chinensis HOM05D003589 ORTHO05D005170 1.6e-39 166.8 186 51.1
Glyma.18G213700 Glycine max HOM05D003589 ORTHO05D005170 2.1e-39 166.4 184 54.9
FAN09G1607 Fragaria x ananassa HOM05D003589 ORTHO05D005170 4.7e-39 165.2 186 51.6
Peaxi162Scf00732g00259 Petunia axillaris HOM05D003589 ORTHO05D005170 4.7e-39 165.2 176 49.4
Rhsim04G0121600 Rhododendron simsii HOM05D003589 ORTHO05D005170 4.7e-39 165.2 175 47.4
Nitab4.5_0004433g0040 Nicotiana tabacum HOM05D003589 ORTHO05D005170 8.0e-39 164.5 172 50.0
Nitab4.5_0000048g0030 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.0e-38 164.1 176 49.4
GSVIVG01030180001 Vitis vinifera HOM05D003589 ORTHO05D005170 1.0e-38 164.1 176 54.5
arahy.Tifrunner.gnm1.ann1.IRJT2S Arachis hypogaea HOM05D003589 ORTHO05D005170 1.4e-38 163.7 188 50.5
Glyma.09G274700 Glycine max HOM05D003589 ORTHO05D005170 1.4e-38 163.7 174 52.3
arahy.Tifrunner.gnm1.ann1.US8I5D Arachis hypogaea HOM05D003589 ORTHO05D005170 6.8e-38 161.4 188 50.0
Medtr7g073280 Medicago truncatula HOM05D003589 ORTHO05D005170 6.8e-38 161.4 176 50.6
EL10Ac7g17103 Beta vulgaris HOM05D003589 ORTHO05D005170 1.5e-37 160.2 179 49.7
Hund03699 Selenicereus undatus HOM05D003589 ORTHO05D005170 2.0e-37 159.8 176 50.6
Sopen09g009460 Solanum pennellii HOM05D003589 ORTHO05D005170 2.6e-37 159.5 178 50.6
PGR031G3776 Punica granatum HOM05D003589 ORTHO05D005170 3.4e-37 159.1 178 51.1
Solyc09g015530.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 7.5e-37 157.9 178 50.0
PGSC0003DMG400026790 Solanum tuberosum HOM05D003589 ORTHO05D005170 7.5e-37 157.9 177 49.2
Aqoxy4G02429 Aquilegia oxysepala HOM05D003589 ORTHO05D005170 2.2e-36 156.4 191 47.6
Ca_02266_v3 Cicer arietinum L. HOM05D003589 ORTHO05D005170 2.9e-36 156.0 151 56.3
Sed0028030 Sechium edule HOM05D003589 ORTHO05D005170 3.7e-36 155.6 131 60.3
TAR369G0333 Trochodendron aralioides HOM05D003589 ORTHO05D005170 6.4e-36 154.8 188 48.4
MD04G1174800 Malus domestica HOM05D003589 ORTHO05D005170 8.3e-36 154.5 177 50.8
VMungo1383G2329 Vigna mungo HOM05D003589 ORTHO05D005170 5.4e-35 151.8 175 50.9
CSS0028706 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 1.6e-34 150.2 162 51.2
AUR62006418 Chenopodium quinoa HOM05D003589 ORTHO05D005170 1.6e-34 150.2 177 48.0
AUR62029766 Chenopodium quinoa HOM05D003589 ORTHO05D005170 2.0e-34 149.8 176 47.7
Phvul.008G082600 Phaseolus vulgaris HOM05D003589 ORTHO05D005170 2.7e-34 149.4 184 46.7
A03p48340 Brassica napus HOM05D003589 ORTHO05D005170 4.6e-34 148.7 179 51.4
Dinv34487 Davidia involucrata HOM05D003589 ORTHO05D005170 5.9e-34 148.3 186 46.8
Ah.15g090010 Amaranthus hybridus HOM05D003589 ORTHO05D005170 1.3e-33 147.1 178 48.3
Aa31LG1G13800 Aethionema arabicum HOM05D003589 ORTHO05D005170 2.3e-33 146.4 182 47.8
MSTRG.5498 Avicennia marina HOM05D003589 ORTHO05D005170 1.5e-32 143.7 185 43.8
Manes.08G171100 Manihot esculenta HOM05D003589 ORTHO05D005170 1.5e-32 143.7 135 53.3
BraA03t13942Z Brassica rapa HOM05D003589 ORTHO05D005170 3.3e-32 142.5 180 50.0
DCAR_028921 Daucus carota HOM05D003589 ORTHO05D005170 4.3e-32 142.1 184 46.7
Sp5g10690 Schrenkiella parvula HOM05D003589 ORTHO05D005170 7.3e-32 141.4 181 48.1
Oeu057998.1 Olea europaea HOM05D003589 ORTHO05D005170 9.5e-32 141.0 159 47.2
AL5G32020 Arabidopsis lyrata HOM05D003589 ORTHO05D005170 1.2e-31 140.6 181 48.1
Thhalv10010441m.g Eutrema salsugineum HOM05D003589 ORTHO05D005170 1.2e-31 140.6 181 48.1
AT3G51580 Arabidopsis thaliana HOM05D003589 ORTHO05D005170 2.1e-31 139.8 181 48.6
BolC7t45155H Brassica oleracea HOM05D003589 ORTHO05D005170 2.1e-31 139.8 180 49.4
C07p46370 Brassica napus HOM05D003589 ORTHO05D005170 3.6e-31 139.0 180 48.9
CARHR161170 Cardamine hirsuta HOM05D003589 ORTHO05D005170 1.4e-30 137.1 190 49.5
Carub.0005s1794 Capsella rubella HOM05D003589 ORTHO05D005170 2.3e-30 136.3 182 48.9
SalBow5G3966 Salvia bowleyana HOM05D003589 ORTHO05D005170 3.1e-30 136.0 184 45.1
Hma1.2p1_0264F.1_g106130 Hydrangea macrophylla HOM05D003589 ORTHO05D005170 6.8e-30 134.8 177 45.8
PSO170G6362 Papaver somniferum HOM05D003589 ORTHO05D005170 3.4e-29 132.5 195 43.6
MBI15_g01602_MAGBIO Magnolia biondii HOM05D003589 ORTHO05D005170 4.4e-29 132.1 196 42.3
Actinidia31628 Actinidia chinensis HOM05D003589 ORTHO05D005170 1.3e-28 130.6 180 43.9
CSS0030619 Camellia sinensis var. sinensis HOM05D003589 ORTHO05D005170 2.2e-28 129.8 192 44.3
Migut.J00036 Erythranthe guttata HOM05D003589 ORTHO05D005170 4.9e-28 128.6 188 41.0
MELO3C020009.2 Cucumis melo HOM05D003589 ORTHO05D005170 6.4e-28 128.3 186 45.7
Ciclev10032400m.g Citrus clementina HOM05D003589 ORTHO05D005170 8.3e-28 127.9 186 39.2
CsaV3_6G002320 Cucumis sativus L. HOM05D003589 ORTHO05D005170 5.4e-27 125.2 186 43.5
BcaC06g33027 Brassica carinata HOM05D003589 ORTHO05D005170 1.6e-26 123.6 178 46.6
ClCG11G005660 Citrullus lanatus HOM05D003589 ORTHO05D005170 2.0e-26 123.2 141 44.7
MD12G1188500 Malus domestica HOM05D003589 ORTHO05D005170 4.6e-26 122.1 177 44.6
Rhsim03G0152300 Rhododendron simsii HOM05D003589 ORTHO05D005170 1.0e-25 120.9 178 41.6
Sed0000653 Sechium edule HOM05D003589 ORTHO05D005170 1.0e-25 120.9 186 40.9
PGR142G3587 Punica granatum HOM05D003589 ORTHO05D005170 1.3e-25 120.6 180 41.7
Rhsim03G0152700 Rhododendron simsii HOM05D003589 ORTHO05D005170 3.0e-25 119.4 178 41.0
ECA247G3378 Erigeron canadensis HOM05D000259 ORTHO05D000155 8.6e-25 117.9 128 49.2
CANSAT56G1879 Cannabis sativa HOM05D003589 ORTHO05D005170 1.5e-24 117.1 209 37.3
Eucgr.G03139 Eucalyptus grandis HOM05D003589 ORTHO05D005170 1.9e-24 116.7 180 43.3
vmacro06893 Vaccinium macrocarpon HOM05D003589 ORTHO05D005170 4.3e-24 115.5 185 41.6
GSVIVG01032671001 Vitis vinifera HOM05D003589 ORTHO05D005170 5.6e-24 115.2 147 42.2
Lj8A54T74 Lonicera japonica HOM05D003589 ORTHO05D005170 9.5e-24 114.4 193 39.4
Cpa.g.sc19.55 Carica papaya HOM05D003589 ORTHO05D005170 1.6e-23 113.6 141 39.0
Nitab4.5_0002279g0060 Nicotiana tabacum HOM05D003589 ORTHO05D005170 1.6e-23 113.6 170 42.9
SGA_v2.0_scaffold85G26610 Striga asiatica HOM05D003589 ORTHO05D005170 1.6e-23 113.6 171 39.2
HanXRQChr10g0287531 Helianthus annuus HOM05D003589 ORTHO05D005170 6.2e-23 111.7 127 55.1
SEGI_11810 Sequoiadendron giganteum HOM05D003589 ORTHO05D005170 3.1e-22 109.4 189 37.6
HPP92_015592 Vanilla planifolia HOM05D003589 ORTHO05D005170 3.1e-22 109.4 192 38.5
Peaxi162Scf00167g01218 Petunia axillaris HOM05D003589 ORTHO05D005170 4.0e-22 109.0 169 37.9
Manes.10G001600 Manihot esculenta HOM05D003589 ORTHO05D005170 5.2e-22 108.6 186 36.0
Cc02_g05350 Coffea canephora HOM05D003589 ORTHO05D005170 1.5e-21 107.1 178 38.2
Duzib114G0452 Durio zibethinus HOM05D003589 ORTHO05D005170 9.8e-21 104.4 187 35.3
Thecc.10G179400 Theobroma cacao HOM05D003589 ORTHO05D005170 3.7e-20 102.4 175 36.0
Lsat_1_v5_gn_9_38921 Lactuca sativa HOM05D003589 ORTHO05D005170 8.3e-20 101.3 114 47.4
Os05g0478200 Oryza sativa ssp. japonica HOM05D003589 ORTHO05D005170 8.3e-20 101.3 175 40.6
Oeu006056.1 Olea europaea HOM05D003589 ORTHO05D005170 2.4e-19 99.8 177 39.5
Nitab4.5_0000375g0230 Nicotiana tabacum HOM05D003589 ORTHO05D005170 3.2e-19 99.4 171 41.5
Potri.019G058400 Populus trichocarpa HOM05D003589 ORTHO05D005170 5.4e-19 98.6 187 36.9
DCAR_018039 Daucus carota HOM05D003589 ORTHO05D005170 7.1e-19 98.2 198 32.3
Sopen05g030750 Solanum pennellii HOM05D003589 ORTHO05D005170 1.3e-17 94.0 169 37.3
PGSC0003DMG400011643 Solanum tuberosum HOM05D003589 ORTHO05D005170 1.3e-17 94.0 175 37.1
CDE04G2629 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 6.6e-17 91.7 150 40.7
CDE04G3060 Ceratophyllum demersum HOM05D003589 ORTHO05D005170 1.1e-16 90.9 149 39.6
Oeu060212.1 Olea europaea HOM05D003589 ORTHO05D005170 1.5e-16 90.5 99 50.5
Solyc05g052210.3 Solanum lycopersicum HOM05D003589 ORTHO05D005170 5.6e-16 88.6 141 34.8
ATR1127G101 Amborella trichopoda HOM05D003589 ORTHO05D005170 9.5e-16 87.8 197 32.0
Oeu044185.1 Olea europaea HOM05D003589 ORTHO05D005170 1.2e-15 87.4 108 45.4
DCAR_014664 Daucus carota HOM05D003589 ORTHO05D005170 2.8e-15 86.3 153 32.0
unitig_578.g15914 Utricularia gibba HOM05D003589 ORTHO05D005170 4.7e-15 85.5 175 33.1
Gohir.D04G012700 Gossypium hirsutum HOM05D003589 ORTHO05D005170 6.2e-15 85.1 179 37.4
Gorai.012G015000 Gossypium raimondii HOM05D003589 ORTHO05D005170 6.2e-15 85.1 179 38.0
SalBow5G5138 Salvia bowleyana HOM05D003589 ORTHO05D005170 6.2e-15 85.1 169 36.7
Zm00001eb352040 Zea mays HOM05D003589 ORTHO05D005170 6.2e-15 85.1 186 35.5
COL.COLO4_19418 Corchorus olitorius HOM05D003589 ORTHO05D005170 1.4e-14 84.0 154 31.8
Gohir.A05G402800 Gossypium hirsutum HOM05D003589 ORTHO05D005170 3.1e-14 82.8 179 38.0
Zm00001eb290650 Zea mays HOM05D003589 ORTHO05D005170 4.0e-14 82.4 185 32.4
Sabra19G0073800 Salix brachista HOM05D003589 ORTHO05D005170 5.2e-14 82.0 152 37.5
MSTRG.169 Avicennia marina HOM05D003589 ORTHO05D005170 1.7e-12 77.0 125 37.6
HanXRQChr07g0204121 Helianthus annuus HOM05D003589 ORTHO05D005170 2.7e-10 69.7 162 34.6
Lsat_1_v5_gn_2_126280 Lactuca sativa HOM05D003589 ORTHO05D005170 6.0e-10 68.6 190 28.4
ECA238G2532 Erigeron canadensis HOM05D003589 ORTHO05D005170 2.5e-08 63.2 174 30.5


User provided reference genes

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