Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 0.0e+00 1477.2 798 100.0
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1095.5 803 75.5
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1086.2 803 75.0
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 3.2e-310 1068.1 803 73.8
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 1.5e-307 1059.3 803 74.6
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 3.6e-306 1054.7 801 72.9
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 2.6e-304 1048.5 801 73.2
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 6.0e-301 1037.3 807 70.9
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 2.1e-298 1028.9 801 73.7
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 1.1e-297 1026.5 802 71.4
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 8.9e-297 1023.5 800 72.8
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 6.4e-295 1017.3 802 70.9
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-294 1016.5 807 68.3
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 5.4e-294 1014.2 803 70.2
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 7.1e-294 1013.8 807 68.2
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 5.1e-292 1007.7 791 68.6
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 7.3e-291 1003.8 803 70.0
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 9.6e-291 1003.4 807 69.9
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 1.9e-286 989.2 804 69.9
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 1.4e-281 973.0 803 68.5
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 8.4e-279 963.8 790 69.6
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-278 963.4 791 69.4
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 3.2e-278 961.8 802 69.1
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 9.3e-278 960.3 791 69.3
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 1.6e-277 959.5 791 69.3
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 2.3e-276 955.7 802 65.8
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 3.0e-276 955.3 801 67.9
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 1.9e-275 952.6 803 68.6
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.3e-275 951.8 810 66.9
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 3.3e-275 951.8 804 66.5
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 6.2e-274 947.6 807 67.5
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 5.8e-272 941.0 804 67.2
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 7.6e-272 940.6 752 71.0
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 2.9e-271 938.7 752 70.9
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 8.4e-271 937.2 806 68.1
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 7.9e-269 930.6 759 69.2
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.5e-267 926.4 807 65.4
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.3e-267 924.9 807 65.7
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 7.4e-267 924.1 802 64.0
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.7e-266 921.8 802 63.8
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 6.2e-266 921.0 803 65.6
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 8.2e-266 920.6 800 66.0
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 4.0e-265 918.3 794 68.3
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 4.2e-262 908.3 803 67.4
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 5.5e-262 907.9 802 65.0
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 1.8e-260 902.9 810 63.5
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 5.1e-260 901.4 826 62.2
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.1e-259 900.2 799 63.7
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.1e-259 900.2 811 63.0
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 9.7e-259 897.1 807 65.8
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 1.1e-257 893.6 798 66.7
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.8e-257 892.9 802 63.0
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 6.9e-257 891.0 808 64.5
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.0e-256 889.4 805 65.8
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 2.6e-256 889.0 808 63.9
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 4.5e-256 888.3 800 64.4
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 5.9e-256 887.9 808 64.4
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 1.0e-255 887.1 795 64.8
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 1.7e-255 886.3 801 64.3
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.9e-254 882.9 742 68.2
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 5.5e-254 881.3 801 63.7
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 7.2e-254 880.9 798 64.4
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 3.6e-253 878.6 826 64.4
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 3.6e-253 878.6 826 64.4
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 6.1e-253 877.9 794 63.1
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 1.0e-252 877.1 817 63.3
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.3e-252 876.7 790 63.5
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 5.1e-252 874.8 816 62.3
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 6.7e-252 874.4 817 63.0
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.5e-251 872.5 803 64.3
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 9.7e-251 870.5 819 63.2
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 8.2e-250 867.5 799 60.6
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 3.1e-249 865.5 797 63.0
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 5.3e-249 864.8 804 62.1
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 4.5e-248 861.7 788 63.7
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.4e-246 856.7 793 63.1
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 1.4e-246 856.7 794 63.7
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 1.2e-245 853.6 797 62.1
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.6e-245 853.2 816 60.9
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 1.0e-244 850.5 828 61.6
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 1.4e-244 850.1 803 62.4
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 4.4e-243 845.1 803 60.3
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 2.9e-239 832.4 796 61.3
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 8.5e-239 830.9 811 63.6
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 4.7e-237 825.1 812 59.7
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-235 820.5 689 65.3
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 1.3e-231 807.0 799 58.9
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 2.0e-227 793.1 787 61.1
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 1.3e-226 790.4 787 60.6
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.1e-225 787.3 787 60.7
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.4e-225 786.9 803 57.8
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 5.0e-223 778.5 787 59.3
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 6.5e-223 778.1 809 57.6
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 1.1e-222 777.3 787 59.7
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 7.2e-222 774.6 798 59.1
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 6.1e-221 771.5 805 60.1
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.0e-220 770.8 804 58.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.0e-219 766.5 807 59.4
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 2.6e-219 766.1 798 56.8
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 5.7e-219 765.0 805 60.7
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.1e-217 758.8 788 57.6
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 2.7e-216 756.1 787 59.1
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 4.2e-214 748.8 805 55.3
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.8e-213 746.1 788 56.5
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 3.6e-213 745.7 803 53.4
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 1.8e-212 743.4 788 57.2
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 5.2e-212 741.9 794 57.3
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.6e-211 739.6 799 56.3
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 4.1e-209 732.3 789 57.9
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 5.9e-208 728.4 800 57.0
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 1.7e-207 726.9 799 54.3
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 5.0e-207 725.3 794 57.1
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 6.6e-207 724.9 787 58.7
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 2.5e-206 723.0 789 58.8
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 4.3e-206 722.2 802 57.5
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 4.0e-204 715.7 720 60.3
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.2e-202 709.9 793 59.3
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 9.2e-201 704.5 795 56.1
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.3e-199 700.7 793 58.3
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 1.7e-199 700.3 788 56.1
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 7.3e-198 694.9 760 58.7
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.1e-196 691.0 802 52.9
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 1.5e-195 687.2 788 55.3
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 3.4e-195 686.0 792 55.7
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 5.8e-195 685.3 790 55.9
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 1.7e-194 683.7 792 55.8
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 2.2e-194 683.3 758 55.3
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 2.2e-194 683.3 638 65.4
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 6.4e-194 681.8 792 55.7
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 7.0e-193 678.3 792 55.2
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 1.6e-189 667.2 785 55.0
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 4.7e-189 665.6 787 55.4
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 6.8e-188 661.8 806 54.8
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 5.6e-182 642.1 665 59.1
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 3.6e-181 639.4 809 54.5
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 1.2e-179 634.4 747 53.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 2.0e-179 633.6 809 53.9
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 4.4e-179 632.5 806 53.7
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 4.4e-179 632.5 809 53.2
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 6.4e-178 628.6 806 50.9
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 2.0e-171 607.1 676 56.8
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 7.6e-171 605.1 860 48.7
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 3.0e-167 593.2 784 50.9
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 5.1e-167 592.4 763 51.8
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 3.8e-154 549.7 717 52.4
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 6.4e-154 548.9 757 52.2
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 3.1e-148 530.0 754 49.2
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 5.9e-131 472.6 804 45.9
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 7.7e-131 472.2 784 46.6
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 5.3e-124 449.5 745 45.5
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 1.0e-119 435.3 727 46.6
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 3.9e-119 433.3 405 64.7
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 6.3e-117 426.0 444 59.9
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 1.1e-113 415.2 802 41.9
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 1.5e-113 414.8 806 42.3
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 4.1e-108 396.7 742 42.6
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.7e-107 394.0 561 53.1
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 3.2e-105 387.1 813 40.7
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 3.7e-101 373.6 743 39.3
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.1e-100 372.1 769 40.1
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.5e-97 361.7 792 39.5
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 6.8e-95 352.8 747 43.2
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 9.8e-94 349.0 767 42.5
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.5e-81 308.5 830 36.5
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.6e-75 288.5 792 36.6
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 4.0e-71 273.9 446 45.5
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.3e-66 258.8 297 51.2
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.8e-64 251.1 364 48.1
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 3.6e-64 250.8 492 38.8
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 2.6e-62 244.6 264 69.7
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 7.6e-62 243.0 230 55.2
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.3e-61 242.3 280 50.4
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 8.4e-61 239.6 304 47.7
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.1e-60 239.2 340 45.9
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 2.4e-60 238.0 308 46.4
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 9.0e-55 219.5 256 49.6
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.1e-51 208.4 289 43.6
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.6e-48 197.6 824 28.2
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 5.3e-47 193.7 346 41.9
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.8e-40 171.4 236 42.8
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 6.0e-35 153.7 81 96.3
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 6.9e-31 140.2 166 52.4
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 1.0e-21 109.8 164 41.5
Sabra13G0121900 Salix brachista HOM05D000070 ORTHO05D002524 1.2e-06 59.7 68 51.5
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 2.6e-06 58.5 37 67.6


User provided reference genes

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