Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc86.27 Carica papaya HOM05D000751 ORTHO05D005618 0.0e+00 1494.9 775 100.0
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 8.2e-255 884.0 641 69.7
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.0e-252 877.1 643 69.4
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 1.7e-252 876.3 581 74.5
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 2.0e-248 862.8 649 68.7
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 2.0e-248 862.8 640 66.1
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 3.3e-248 862.1 639 68.9
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 4.8e-247 858.2 672 65.3
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 7.7e-245 850.9 637 65.9
Thhalv10006892m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 3.2e-243 845.5 590 70.3
Aa31LG7G2520 Aethionema arabicum HOM05D000751 ORTHO05D005618 9.4e-243 844.0 641 66.5
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.6e-242 843.2 628 67.5
AL1G30040 Arabidopsis lyrata HOM05D000751 ORTHO05D005618 8.0e-242 840.9 646 67.0
CARHR018290 Cardamine hirsuta HOM05D000751 ORTHO05D005618 1.4e-241 840.1 589 70.8
AT1G17690 Arabidopsis thaliana HOM05D000751 ORTHO05D005618 1.8e-241 839.7 647 66.5
TWI38G2172 Tripterygium wilfordii HOM05D000751 ORTHO05D005618 5.7e-240 834.7 640 66.6
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 8.2e-239 830.9 644 66.5
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 1.1e-238 830.5 614 67.8
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 1.8e-238 829.7 608 68.3
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 7.0e-238 827.8 644 66.6
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.5e-237 825.1 614 67.8
BraA08t35010Z Brassica rapa HOM05D000751 ORTHO05D005618 7.7e-237 824.3 589 69.4
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.2e-236 822.8 657 65.6
C08p18130 Brassica napus HOM05D000751 ORTHO05D005618 3.8e-236 822.0 635 65.5
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 6.5e-236 821.2 628 66.1
A08p30790 Brassica napus HOM05D000751 ORTHO05D005618 1.5e-235 820.1 643 65.5
Thecc.09G180200 Theobroma cacao HOM05D000751 ORTHO05D005618 7.2e-235 817.8 647 64.9
BolC8t49447H Brassica oleracea HOM05D000751 ORTHO05D005618 8.0e-234 814.3 644 64.9
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 8.0e-234 814.3 584 67.8
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 1.4e-233 813.5 635 65.2
Duzib168G1036 Durio zibethinus HOM05D000751 ORTHO05D005618 1.8e-233 813.1 619 66.6
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.3e-233 812.8 638 65.4
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 3.0e-233 812.4 628 65.6
Potri.003G010000 Populus trichocarpa HOM05D000751 ORTHO05D005618 5.7e-232 808.1 642 63.9
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 2.2e-231 806.2 640 64.7
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 8.3e-231 804.3 580 69.0
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 3.1e-230 802.4 607 64.6
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.7e-229 799.3 609 64.7
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 5.5e-227 791.6 597 65.5
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 1.0e-225 787.3 583 66.0
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 1.8e-225 786.6 576 67.5
EL10Ac2g02594 Beta vulgaris HOM05D000751 ORTHO05D005618 3.4e-224 782.3 663 60.0
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 3.4e-224 782.3 632 61.4
Thhalv10023137m.g Eutrema salsugineum HOM05D000751 ORTHO05D005618 1.1e-222 777.3 591 66.8
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.4e-222 776.9 653 61.6
EL10As14g24084 Beta vulgaris HOM05D000751 ORTHO05D005618 2.4e-222 776.2 654 60.6
Hund24686 Selenicereus undatus HOM05D000751 ORTHO05D005618 9.2e-222 774.2 668 59.1
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 5.9e-221 771.5 606 62.4
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 1.5e-219 766.9 588 63.4
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 4.7e-218 761.9 651 60.5
Sc06g0007900 Simmondsia chinensis HOM05D000751 ORTHO05D005618 5.2e-217 758.4 540 67.6
Migut.L01901 Erythranthe guttata HOM05D000751 ORTHO05D005618 2.0e-216 756.5 585 62.7
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.3e-215 753.8 638 60.5
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 2.9e-215 752.7 661 59.3
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 6.4e-215 751.5 620 62.4
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 1.4e-214 750.4 635 60.8
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 1.9e-214 750.0 634 61.0
MSTRG.26530 Avicennia marina HOM05D000751 ORTHO05D005618 5.4e-214 748.4 643 59.3
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 4.6e-213 745.3 661 58.9
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 1.3e-212 743.8 653 59.7
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.5e-211 740.3 631 59.9
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 8.0e-210 734.6 647 58.6
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 8.9e-209 731.1 637 59.3
HanXRQChr03g0068331 Helianthus annuus HOM05D000751 ORTHO05D005618 5.4e-206 721.8 579 62.3
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 4.6e-205 718.8 646 58.0
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 8.6e-204 714.5 607 61.1
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 1.4e-201 707.2 622 57.6
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 9.9e-200 701.0 931 45.3
SGA_v2.0_scaffold595G53113 Striga asiatica HOM05D000751 ORTHO05D005618 6.4e-199 698.4 581 59.6
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 1.6e-197 693.7 761 49.9
Rhsim01G0197100 Rhododendron simsii HOM05D000751 ORTHO05D005618 1.6e-194 683.7 698 53.9
Medtr2g036890 Medicago truncatula HOM05D000751 ORTHO05D005618 6.2e-194 681.8 648 54.9
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 1.8e-193 680.2 543 62.6
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 6.8e-193 678.3 506 64.8
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 2.0e-192 676.8 635 56.7
Medtr2g012650 Medicago truncatula HOM05D000751 ORTHO05D005618 9.9e-192 674.5 645 54.6
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.9e-191 672.2 583 59.3
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.4e-191 671.4 602 57.6
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.9e-190 670.2 640 55.0
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 1.5e-187 660.6 610 56.7
Carub.0003s1065 Capsella rubella HOM05D000751 ORTHO05D005618 4.9e-183 645.6 646 54.2
AUR62014975 Chenopodium quinoa HOM05D000751 ORTHO05D005618 2.8e-178 629.8 679 51.1
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 4.8e-178 629.0 630 52.2
unitig_8.g3549 Utricularia gibba HOM05D000751 ORTHO05D005618 1.4e-177 627.5 661 49.9
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.9e-175 619.8 662 55.1
Os05g0295100 Oryza sativa ssp. japonica HOM05D000751 ORTHO05D005618 1.3e-172 610.9 629 51.8
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 2.9e-167 593.2 621 52.0
SalBow6G2294 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.8e-167 592.8 705 48.5
DCAR_007396 Daucus carota HOM05D000751 ORTHO05D005618 1.5e-163 580.9 664 48.9
Oeu047314.3 Olea europaea HOM05D000751 ORTHO05D005618 2.5e-163 580.1 673 47.8
AagrBONN_evm.TU.Sc2ySwM_369.592 Anthoceros agrestis HOM05D000751 ORTHO05D005618 3.7e-162 576.2 579 50.4
SMO296G0020 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 2.4e-161 573.5 601 49.1
Mapoly0074s0025 Marchantia polymorpha HOM05D000751 ORTHO05D005618 1.2e-160 571.2 587 49.2
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 4.8e-154 549.3 384 70.3
MD03G1036400 Malus domestica HOM05D000751 ORTHO05D005618 1.4e-153 547.7 428 65.2
Pp3c10_17670 Physcomitrium patens HOM05D000751 ORTHO05D005618 9.0e-153 545.0 587 49.7
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.6e-149 533.1 382 70.2
CBR_g38171 Chara braunii HOM05D000751 ORTHO05D005618 4.2e-142 509.6 652 44.8
Glyma.15G163800 Glycine max HOM05D000751 ORTHO05D005618 8.2e-138 495.4 405 62.7
Aqoxy1G02673 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 4.8e-130 469.5 432 59.7
SalBow6G6994 Salvia bowleyana HOM05D000751 ORTHO05D005618 3.2e-126 456.8 562 46.3
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 2.2e-122 444.1 572 46.0
CAN.G193.38 Capsicum annuum HOM05D000751 ORTHO05D005618 2.0e-115 421.0 345 61.2
AUR62030665 Chenopodium quinoa HOM05D000751 ORTHO05D005618 8.3e-114 415.6 322 63.0
SEGI_35111 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 1.8e-113 414.5 288 67.7
BcaB05g23995 Brassica carinata HOM05D000751 ORTHO05D005618 4.1e-113 413.3 484 46.1
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 4.1e-113 413.3 315 65.1
HPP92_028564 Vanilla planifolia HOM05D000751 ORTHO05D005618 4.1e-113 413.3 335 63.0
Dinv26447 Davidia involucrata HOM05D000751 ORTHO05D005618 1.7e-111 407.9 326 65.6
SMO174G0270 Selaginella moellendorffii HOM05D000751 ORTHO05D005618 1.0e-103 382.1 499 42.5
Cre04.g218300 Chlamydomonas reinhardtii HOM05D000751 ORTHO05D005618 1.2e-99 368.6 434 44.5
Hma1.2p1_0909F.1_g235820 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.9e-98 363.2 433 49.7
BolC2t08163H Brassica oleracea HOM05D000751 ORTHO05D005618 1.0e-95 355.5 356 53.4
MCO16G456 Micromonas commoda HOM05D000751 ORTHO05D005618 2.1e-93 347.8 525 37.5
Cfa022413 Carpinus fangiana HOM05D000751 ORTHO05D005618 1.4e-81 308.5 463 38.7
Ca_05496_v3 Cicer arietinum L. HOM05D000751 ORTHO05D005618 4.6e-80 303.5 321 52.0
Psat4g182200 Pisum sativum HOM05D000751 ORTHO05D005618 6.0e-80 303.1 302 55.6
COL.COLO4_25458 Corchorus olitorius HOM05D000751 ORTHO05D005618 3.0e-79 300.8 388 46.4
PRCOL_00003641 Prasinoderma coloniale HOM05D000751 ORTHO05D005618 5.8e-75 286.6 560 32.0
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.3e-65 252.7 213 61.5
Haze_19748 Corylus avellana HOM05D000751 ORTHO05D005618 1.4e-60 238.8 356 43.3
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 5.3e-60 236.9 154 75.3
Nn2g10858 Nelumbo nucifera HOM05D000751 ORTHO05D005618 2.0e-59 235.0 153 74.5
Solyc07g009350.4 Solanum lycopersicum HOM05D000751 ORTHO05D005618 2.9e-58 231.1 297 47.1
Psat4g047120 Pisum sativum HOM05D000751 ORTHO05D005618 3.0e-55 221.1 202 59.9
SEGI_01124 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 5.1e-55 220.3 145 71.7
AUR62024882 Chenopodium quinoa HOM05D000751 ORTHO05D005618 1.9e-54 218.4 203 51.2
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.9e-52 209.9 135 74.1
BcaC03g14585 Brassica carinata HOM05D000751 ORTHO05D005618 1.5e-51 208.8 287 46.7
SEGI_01043 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.0e-51 208.4 193 54.9
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 5.5e-49 200.3 146 66.4
Medtr8g466490 Medicago truncatula HOM05D000751 ORTHO05D005618 2.7e-48 198.0 300 39.7
CAN.G266.3 Capsicum annuum HOM05D000751 ORTHO05D005618 3.7e-45 187.6 233 45.9
Medtr4g415340 Medicago truncatula HOM05D000751 ORTHO05D005618 3.7e-45 187.6 261 42.5
Medtr8g466500 Medicago truncatula HOM05D000751 ORTHO05D005618 5.5e-41 173.7 328 38.4
COL.COLO4_25459 Corchorus olitorius HOM05D000751 ORTHO05D005618 1.0e-34 152.9 114 69.3
Sabra15G0073700 Salix brachista HOM05D000810 ORTHO05D005618 2.7e-32 144.8 304 34.2
Aqoxy3G01439 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.4e-31 142.5 90 77.8
MD13G1251100 Malus domestica HOM05D000751 ORTHO05D005618 3.0e-31 141.4 185 41.6
Nn2g10857 Nelumbo nucifera HOM05D000751 ORTHO05D005618 7.4e-30 136.7 82 79.3
Hma1.2p1_2432F.1_g322050 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 1.3e-26 125.9 147 45.6
Psat4g182280 Pisum sativum HOM05D000751 ORTHO05D005618 1.6e-24 119.0 82 69.5
SEGI_01614 Sequoiadendron giganteum HOM05D000751 ORTHO05D005618 2.7e-24 118.2 81 66.7
Sc06g0007910 Simmondsia chinensis HOM05D000751 ORTHO05D005618 7.9e-24 116.7 154 42.2
Gorai.003G081200 Gossypium raimondii HOM05D000751 ORTHO05D005618 5.7e-22 110.5 68 79.4
Hma1.2p1_2432F.1_g322060 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 2.2e-21 108.6 85 63.5
Aqoxy2G02180 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 2.8e-21 108.2 105 53.3
Aqoxy125s004 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.8e-20 105.5 88 62.5
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 4.5e-19 100.9 103 52.4
Sopen07g005100 Solanum pennellii HOM05D000002 ORTHO05D000001 5.9e-19 100.5 68 70.6
Hma1.2p1_2432F.1_g322070 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 3.3e-14 84.7 93 54.8
HPP92_003077 Vanilla planifolia HOM05D000751 ORTHO05D005618 6.3e-13 80.5 84 52.4
Aqoxy1G02674 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 1.6e-08 65.9 95 41.1
Rhsim03G0091700 Rhododendron simsii HOM05D000751 ORTHO05D340051 4.4e-06 57.8 35 71.4


User provided reference genes

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