Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.6e-138 496.1 260 100.0
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 6.7e-92 341.3 260 73.1
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 1.4e-60 237.3 267 55.1
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.9e-60 235.7 269 54.6
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 3.7e-58 229.2 267 54.7
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 4.1e-57 225.7 262 56.1
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 6.9e-57 224.9 269 51.7
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.8e-55 219.2 275 53.8
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 8.5e-55 218.0 270 53.7
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.4e-54 217.2 287 50.5
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.9e-54 216.9 268 53.0
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 7.2e-54 214.9 267 53.6
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.2e-53 214.2 268 51.5
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.2e-53 214.2 271 51.3
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 4.7e-53 212.2 271 52.0
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 7.9e-53 211.5 267 50.2
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.0e-52 211.1 269 52.0
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.8e-52 210.3 265 50.9
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.3e-52 209.9 269 53.2
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.3e-52 209.9 268 50.4
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 8.8e-52 208.0 274 50.4
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 1.5e-51 207.2 276 50.0
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 5.7e-51 205.3 271 52.0
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 9.7e-51 204.5 270 50.4
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.7e-50 202.6 268 48.9
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 4.8e-50 202.2 269 51.3
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 4.8e-50 202.2 269 51.7
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 6.3e-50 201.8 270 48.1
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 6.3e-50 201.8 270 51.9
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.1e-49 201.1 272 52.9
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.4e-49 200.7 269 50.6
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.4e-49 200.7 261 52.1
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.1e-49 199.5 265 49.1
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 4.1e-49 199.1 268 48.9
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.6e-48 197.2 272 52.2
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 2.6e-48 196.4 271 47.6
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.5e-48 196.1 269 49.1
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.5e-48 196.1 268 48.5
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 5.9e-48 195.3 272 52.2
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 1.7e-47 193.7 287 46.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 6.5e-47 191.8 305 45.6
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 1.1e-46 191.0 266 52.3
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 4.2e-46 189.1 271 49.4
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 7.2e-46 188.3 264 48.1
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.6e-45 187.2 272 47.4
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 2.1e-45 186.8 272 47.4
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 2.1e-45 186.8 265 51.3
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.1e-45 186.8 278 47.1
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.7e-45 186.4 266 47.0
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.6e-45 186.0 271 47.2
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 4.7e-45 185.7 268 48.9
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.5e-43 180.6 290 45.2
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 1.5e-43 180.6 251 50.6
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.6e-43 179.9 221 52.0
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 2.6e-43 179.9 267 46.8
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 5.7e-43 178.7 267 46.4
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.3e-42 177.6 267 46.8
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 2.2e-42 176.8 274 46.7
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.2e-42 176.8 278 44.2
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 2.8e-42 176.4 264 45.5
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.1e-41 174.5 280 45.7
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.1e-41 174.5 280 45.7
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.4e-41 174.1 263 47.9
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.8e-41 173.7 272 44.9
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 1.8e-41 173.7 268 46.3
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 4.1e-41 172.6 263 47.5
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.1e-41 172.6 263 47.1
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 5.3e-41 172.2 318 42.1
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 7.0e-41 171.8 272 46.0
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.1e-41 171.4 263 47.9
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.1e-41 171.4 263 47.9
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.1e-41 171.4 263 47.1
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.1e-41 171.4 263 47.1
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-40 171.0 268 44.4
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.6e-40 170.6 280 44.6
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 2.0e-40 170.2 265 47.9
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.0e-40 170.2 265 47.9
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.5e-40 169.5 263 47.5
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 3.5e-40 169.5 282 43.6
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 5.9e-40 168.7 261 44.4
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 7.7e-40 168.3 267 45.7
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-39 167.9 250 48.0
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.0e-39 167.9 259 46.7
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 1.3e-39 167.5 270 46.7
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 1.7e-39 167.2 271 45.8
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 2.2e-39 166.8 269 45.4
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 2.2e-39 166.8 266 45.9
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 5.0e-39 165.6 267 44.2
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 6.5e-39 165.2 270 43.3
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.9e-38 163.7 267 47.9
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 2.5e-38 163.3 269 45.0
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 9.4e-38 161.4 278 43.9
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.2e-37 161.0 274 45.3
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.2e-37 161.0 265 43.8
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 1.6e-37 160.6 273 42.1
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-37 160.2 273 43.6
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.1e-37 160.2 272 41.9
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.1e-37 160.2 269 44.2
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 3.6e-37 159.5 316 39.2
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 4.7e-37 159.1 266 43.6
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 4.7e-37 159.1 268 46.6
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.4e-36 157.5 241 47.7
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.4e-36 157.5 269 42.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 1.8e-36 157.1 273 42.9
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 2.3e-36 156.8 268 43.7
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.3e-36 156.8 202 53.5
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 5.2e-36 155.6 178 53.4
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 5.2e-36 155.6 220 47.3
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 6.8e-36 155.2 263 43.3
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 6.8e-36 155.2 263 43.3
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 6.8e-36 155.2 268 46.3
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 6.8e-36 155.2 275 43.3
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 1.5e-35 154.1 263 42.6
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 1.5e-35 154.1 263 42.6
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.5e-35 154.1 272 43.4
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 3.4e-35 152.9 273 42.5
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 1.7e-34 150.6 263 43.0
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 4.8e-34 149.1 267 40.8
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.4e-33 146.7 213 46.0
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 4.1e-33 146.0 277 42.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 9.1e-33 144.8 265 41.9
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 1.2e-32 144.4 257 45.1
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 2.0e-32 143.7 268 41.8
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 5.9e-32 142.1 322 37.0
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 5.9e-32 142.1 268 40.7
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 5.9e-32 142.1 265 40.8
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.9e-31 139.8 284 40.1
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 5.0e-31 139.0 266 43.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 4.2e-30 136.0 270 42.2
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 7.2e-30 135.2 266 42.5
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 1.2e-29 134.4 269 41.3
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.2e-29 134.4 267 41.2
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.6e-29 134.0 191 48.7
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 2.8e-29 133.3 191 48.2
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.8e-29 133.3 193 49.2
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 4.0e-28 129.4 188 46.3
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 1.2e-27 127.9 265 39.6
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.6e-27 126.7 196 45.9
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.7e-27 125.6 281 38.4
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.8e-25 120.6 266 38.3
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 2.7e-24 116.7 201 42.8
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.7e-24 116.7 289 37.7
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 3.5e-24 116.3 288 38.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 5.9e-24 115.5 271 38.7
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.3e-23 114.4 275 37.8
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 7.3e-22 108.6 267 38.2
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 1.6e-21 107.5 265 37.0
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 6.1e-21 105.5 129 50.4
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-20 104.4 270 34.1
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.8e-20 104.0 162 42.0
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 8.9e-20 101.7 262 37.8
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 1.5e-19 100.9 268 38.4
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 2.6e-19 100.1 142 42.3
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.9e-18 96.7 265 36.6
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 8.3e-18 95.1 265 35.1
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 8.3e-18 95.1 256 35.9
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.4e-17 93.6 261 33.0
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.0e-17 92.0 260 35.4
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 7.0e-17 92.0 362 30.4
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 1.2e-16 91.3 198 39.4
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.6e-16 90.9 73 69.9
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.0e-16 90.5 261 32.6
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.0e-15 88.2 164 38.4
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.6e-15 85.5 260 33.5
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 5.6e-14 82.4 119 47.1
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.8e-13 80.1 258 34.1
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-12 78.2 270 30.4
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 3.1e-12 76.6 263 32.7
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 8.9e-12 75.1 257 33.9
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-09 68.2 69 56.5
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 7.0e-09 65.5 232 31.5
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 2.7e-08 63.5 151 37.1
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 6.0e-08 62.4 179 33.0
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 7.8e-08 62.0 174 31.6
CSS0008617 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 6.6e-07 58.9 84 48.8
Phvul.008G153400 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 1.5e-06 57.8 87 44.8
FAN05G3047 Fragaria x ananassa HOM05D003503 ORTHO05D003885 7.3e-06 55.5 71 54.9
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 7.3e-06 55.5 200 33.5
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 9.5e-06 55.1 117 40.2


User provided reference genes

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