Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.85 Carica papaya HOM05D006823 ORTHO05D008608 6.3e-44 180.3 84 100.0
Manes.08G045100 Manihot esculenta HOM05D006823 ORTHO05D008608 2.4e-14 82.0 45 77.8
CANSAT64G2950 Cannabis sativa HOM05D006823 ORTHO05D008608 4.0e-14 81.3 45 77.8
Sc25g0005140 Simmondsia chinensis HOM05D006823 ORTHO05D008608 4.0e-14 81.3 45 77.8
DCAR_013557 Daucus carota HOM05D006823 ORTHO05D008608 6.8e-14 80.5 45 73.3
Atru.chr8.1064 Acer truncatum HOM05D006823 ORTHO05D008608 8.9e-14 80.1 45 75.6
Sabra16G0052300 Salix brachista HOM05D006823 ORTHO05D008608 2.0e-13 79.0 45 71.1
ClCG10G017400 Citrullus lanatus HOM05D006823 ORTHO05D008608 2.6e-13 78.6 45 68.9
MBI01_g24371_MAGBIO Magnolia biondii HOM05D006823 ORTHO05D008608 2.6e-13 78.6 45 75.6
Thecc.05G168800 Theobroma cacao HOM05D006823 ORTHO05D008608 2.6e-13 78.6 45 75.6
CsaV3_3G038970 Cucumis sativus L. HOM05D006823 ORTHO05D008608 4.4e-13 77.8 45 68.9
Thhalv10006171m.g Eutrema salsugineum HOM05D006823 ORTHO05D008608 4.4e-13 77.8 45 73.3
FvH4_6g22650 Fragaria vesca HOM05D006823 ORTHO05D008608 4.4e-13 77.8 45 75.6
FAN05G5147 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.4e-13 77.8 45 75.6
FAN09G2832 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.4e-13 77.8 45 75.6
FAN14G3816 Fragaria x ananassa HOM05D006823 ORTHO05D008608 4.4e-13 77.8 45 75.6
Duzib093G0556 Durio zibethinus HOM05D006823 ORTHO05D008608 9.9e-13 76.6 42 81.0
Gohir.D09G123300 Gossypium hirsutum HOM05D006823 ORTHO05D008608 9.9e-13 76.6 45 73.3
Gorai.006G141900 Gossypium raimondii HOM05D006823 ORTHO05D008608 9.9e-13 76.6 45 73.3
Prupe.7G074100 Prunus persica HOM05D006823 ORTHO05D008608 9.9e-13 76.6 45 75.6
Aa31LG10G12620 Aethionema arabicum HOM05D006823 ORTHO05D008608 1.3e-12 76.3 43 74.4
CiPaw.09G031900 Carya illinoinensis HOM05D006823 ORTHO05D008608 1.3e-12 76.3 45 73.3
FAN14G5352 Fragaria x ananassa HOM05D006823 ORTHO05D008608 1.3e-12 76.3 45 75.6
Rhsim04G0097800 Rhododendron simsii HOM05D006823 ORTHO05D008608 1.3e-12 76.3 45 73.3
THA.LOC104802464 Tarenaya hassleriana HOM05D006823 ORTHO05D008608 1.3e-12 76.3 45 68.9
AL5G39560 Arabidopsis lyrata HOM05D006823 ORTHO05D008608 1.7e-12 75.9 45 71.1
A07p23720 Brassica napus HOM05D002947 ORTHO05D003447 1.7e-12 75.9 45 71.1
Carub.0005s2475 Capsella rubella HOM05D006823 ORTHO05D008608 1.7e-12 75.9 45 71.1
Sp5g04810 Schrenkiella parvula HOM05D006823 ORTHO05D008608 1.7e-12 75.9 45 71.1
AT3G57910 Arabidopsis thaliana HOM05D006823 ORTHO05D008608 2.2e-12 75.5 45 71.1
CARHR168210 Cardamine hirsuta HOM05D006823 ORTHO05D008608 2.2e-12 75.5 45 68.9
Ciclev10012490m.g Citrus clementina HOM05D006823 ORTHO05D008608 2.2e-12 75.5 45 73.3
ATR0605G325 Amborella trichopoda HOM05D006823 ORTHO05D008608 2.9e-12 75.1 45 71.1
BcaB02g07567 Brassica carinata HOM05D006823 ORTHO05D008608 2.9e-12 75.1 45 71.1
PSO339G6540 Papaver somniferum HOM05D006823 ORTHO05D008608 2.9e-12 75.1 45 71.1
BcaC08g44877 Brassica carinata HOM05D006823 ORTHO05D008608 3.8e-12 74.7 45 68.9
C06p24950 Brassica napus HOM05D002947 ORTHO05D003447 3.8e-12 74.7 45 68.9
BolC6t37647H Brassica oleracea HOM05D002947 ORTHO05D003447 3.8e-12 74.7 45 68.9
BraA07t30025Z Brassica rapa HOM05D006823 ORTHO05D008608 3.8e-12 74.7 45 68.9
Potri.016G048600 Populus trichocarpa HOM05D006823 ORTHO05D008608 3.8e-12 74.7 45 66.7
RcHm_v2.0_Chr3g0480211 Rosa chinensis HOM05D006823 ORTHO05D008608 3.8e-12 74.7 45 71.1
Sed0007671 Sechium edule HOM05D006823 ORTHO05D008608 3.8e-12 74.7 45 66.7
Hund19193 Selenicereus undatus HOM05D006823 ORTHO05D008608 3.8e-12 74.7 45 71.1
CSS0004284 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.9e-12 74.3 45 71.1
CSS0035925 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.9e-12 74.3 45 71.1
CSS0050046 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 4.9e-12 74.3 45 71.1
TWI74G0728 Tripterygium wilfordii HOM05D006823 ORTHO05D008608 4.9e-12 74.3 45 73.3
COL.COLO4_36138 Corchorus olitorius HOM05D006823 ORTHO05D008608 8.4e-12 73.6 49 65.3
Dinv24090 Davidia involucrata HOM05D006823 ORTHO05D008608 1.1e-11 73.2 45 68.9
Os08g0509500 Oryza sativa ssp. japonica HOM05D006823 ORTHO05D008608 1.1e-11 73.2 45 68.9
CSS0029489 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 1.4e-11 72.8 79 45.6
Lsat_1_v5_gn_8_75541 Lactuca sativa HOM05D006823 ORTHO05D008608 1.4e-11 72.8 45 68.9
Nn7g36040 Nelumbo nucifera HOM05D006823 ORTHO05D008608 1.4e-11 72.8 92 42.4
Actinidia17264 Actinidia chinensis HOM05D006823 ORTHO05D008608 2.4e-11 72.0 45 68.9
GSVIVG01033521001 Vitis vinifera HOM05D006823 ORTHO05D008608 2.4e-11 72.0 45 71.1
Cc00_g14630 Coffea canephora HOM05D006823 ORTHO05D008608 3.2e-11 71.6 45 71.1
HPP92_015470 Vanilla planifolia HOM05D006823 ORTHO05D008608 3.2e-11 71.6 45 64.4
Migut.J01822 Erythranthe guttata HOM05D006823 ORTHO05D008608 4.1e-11 71.2 45 66.7
MD14G1060400 Malus domestica HOM05D006823 ORTHO05D008608 4.1e-11 71.2 95 40.0
Zm00001eb035020 Zea mays HOM05D006823 ORTHO05D008608 4.1e-11 71.2 55 56.4
FAN02G3510 Fragaria x ananassa HOM05D006823 ORTHO05D008608 5.4e-11 70.9 45 71.1
Glyma.02G177100 Glycine max HOM05D006823 ORTHO05D008608 5.4e-11 70.9 45 66.7
Medtr1g053570 Medicago truncatula HOM05D006823 ORTHO05D008608 5.4e-11 70.9 55 58.2
PSO384G3045 Papaver somniferum HOM05D006823 ORTHO05D008608 5.4e-11 70.9 45 68.9
arahy.Tifrunner.gnm1.ann1.DD58DK Arachis hypogaea HOM05D006823 ORTHO05D008608 7.1e-11 70.5 45 64.4
arahy.Tifrunner.gnm1.ann1.F8HZ0X Arachis hypogaea HOM05D006823 ORTHO05D008608 7.1e-11 70.5 45 64.4
CSS0018235 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 9.2e-11 70.1 45 66.7
arahy.Tifrunner.gnm1.ann1.ZK4YW6 Arachis hypogaea HOM05D006823 ORTHO05D008608 1.2e-10 69.7 45 64.4
AUR62024323 Chenopodium quinoa HOM05D006823 ORTHO05D008608 1.6e-10 69.3 43 69.8
Solyc11g065380.2 Solanum lycopersicum HOM05D006823 ORTHO05D008608 1.6e-10 69.3 45 66.7
Sopen11g025160 Solanum pennellii HOM05D006823 ORTHO05D008608 1.6e-10 69.3 45 66.7
Glyma.10G091300 Glycine max HOM05D006823 ORTHO05D008608 2.1e-10 68.9 45 66.7
CDE04G3233 Ceratophyllum demersum HOM05D006823 ORTHO05D008608 2.7e-10 68.6 45 66.7
Ca_26114_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 3.5e-10 68.2 45 64.4
PGSC0003DMG401029997 Solanum tuberosum HOM05D006823 ORTHO05D008608 3.5e-10 68.2 45 64.4
MSTRG.19895 Avicennia marina HOM05D006823 ORTHO05D008608 4.6e-10 67.8 45 62.2
HanXRQChr05g0132841 Helianthus annuus HOM05D006823 ORTHO05D008608 4.6e-10 67.8 45 64.4
Lj5g0012941 Lotus japonicus HOM05D006823 ORTHO05D008608 6.0e-10 67.4 45 64.4
Ca_12095_v3 Cicer arietinum L. HOM05D006823 ORTHO05D008608 7.8e-10 67.0 45 64.4
Phvul.007G258100 Phaseolus vulgaris HOM05D006823 ORTHO05D008608 7.8e-10 67.0 45 62.2
EL10Ac3g06941 Beta vulgaris HOM05D006823 ORTHO05D008608 1.0e-09 66.6 45 66.7
Psat1g009680 Pisum sativum HOM05D006823 ORTHO05D008608 1.0e-09 66.6 64 50.0
Nitab4.5_0003572g0020 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.3e-09 66.2 45 64.4
Nitab4.5_0000016g0280 Nicotiana tabacum HOM05D006823 ORTHO05D008608 1.7e-09 65.9 44 63.6
Lalb_Chr10g0091151 Lupinus albus HOM05D006823 ORTHO05D008608 2.3e-09 65.5 45 60.0
CSS0008909 Camellia sinensis var. sinensis HOM05D006823 ORTHO05D008608 3.0e-09 65.1 79 41.8
SGA_v2.0_scaffold69G23076 Striga asiatica HOM05D006823 ORTHO05D008608 3.9e-09 64.7 43 60.5
arahy.Tifrunner.gnm1.ann1.R1CCT6 Arachis hypogaea HOM05D006823 ORTHO05D008608 5.1e-09 64.3 45 60.0
unitig_26.g9037 Utricularia gibba HOM05D006823 ORTHO05D008608 5.1e-09 64.3 45 57.8
TPR.G24279 Trifolium pratense HOM05D006823 ORTHO05D008608 1.1e-08 63.2 74 45.9
Mapoly0104s0025 Marchantia polymorpha HOM05D006823 ORTHO05D008608 7.3e-08 60.5 67 47.8
vmacro09107 Vaccinium macrocarpon HOM05D006823 ORTHO05D008608 1.6e-07 59.3 75 44.0
Eucgr.K01827 Eucalyptus grandis HOM05D006823 ORTHO05D008608 2.1e-07 58.9 38 65.8
Pp3c21_14790 Physcomitrium patens HOM05D006823 ORTHO05D008608 4.7e-07 57.8 41 58.5
SEGI_05037 Sequoiadendron giganteum HOM05D006823 ORTHO05D008608 4.7e-07 57.8 73 39.7
Peaxi162Scf00258g00118 Petunia axillaris HOM05D006823 ORTHO05D008608 2.4e-06 55.5 57 50.9
ECA236G4823 Erigeron canadensis HOM05D006823 ORTHO05D000001 4.0e-06 54.7 33 72.7
Zm00001eb106730 Zea mays HOM05D006823 ORTHO05D008608 6.9e-06 53.9 72 38.9


User provided reference genes

Program Settings