Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.68 Carica papaya HOM05D004474 ORTHO05D005538 1.6e-169 599.4 314 100.0
CANSAT64G2813 Cannabis sativa HOM05D004474 ORTHO05D005538 4.0e-115 418.7 317 70.0
Atru.chr8.1110 Acer truncatum HOM05D004474 ORTHO05D005538 5.2e-115 418.3 314 70.4
Gohir.D09G124000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 6.8e-115 417.9 315 69.2
Gorai.006G142800 Gossypium raimondii HOM05D004474 ORTHO05D005538 6.8e-115 417.9 315 69.2
Thecc.05G171200 Theobroma cacao HOM05D004474 ORTHO05D005538 1.2e-114 417.2 315 70.5
Gohir.A09G128000 Gossypium hirsutum HOM05D004474 ORTHO05D005538 1.5e-114 416.8 315 68.9
CiPaw.09G030400 Carya illinoinensis HOM05D004474 ORTHO05D005538 7.5e-114 414.5 314 69.4
Ciclev10012319m.g Citrus clementina HOM05D004474 ORTHO05D005538 1.3e-113 413.7 314 68.8
COL.COLO4_33985 Corchorus olitorius HOM05D004474 ORTHO05D005538 2.4e-112 409.5 315 68.9
CiPaw.10G026600 Carya illinoinensis HOM05D004474 ORTHO05D005538 1.6e-111 406.8 314 69.4
Haze_19987 Corylus avellana HOM05D004474 ORTHO05D005538 1.6e-111 406.8 318 68.9
Dinv24073 Davidia involucrata HOM05D004474 ORTHO05D005538 7.7e-111 404.4 316 68.0
Cfa020166 Carpinus fangiana HOM05D004474 ORTHO05D005538 1.0e-110 404.1 320 69.1
Manes.09G035300 Manihot esculenta HOM05D004474 ORTHO05D005538 2.2e-110 402.9 314 67.5
QL07p023712 Quercus lobata HOM05D004474 ORTHO05D005538 2.2e-110 402.9 318 68.9
Prupe.7G076700 Prunus persica HOM05D004474 ORTHO05D005538 8.5e-110 401.0 280 71.8
FAN05G0702 Fragaria x ananassa HOM05D004474 ORTHO05D005538 4.2e-109 398.7 315 67.3
Dinv14299 Davidia involucrata HOM05D004474 ORTHO05D005538 5.5e-109 398.3 316 67.1
FvH4_6g22380 Fragaria vesca HOM05D004474 ORTHO05D005538 1.6e-108 396.7 315 67.0
Hma1.2p1_0676F.1_g201960 Hydrangea macrophylla HOM05D004474 ORTHO05D005538 1.4e-107 393.7 316 67.4
Potri.016G045900 Populus trichocarpa HOM05D004474 ORTHO05D005538 1.4e-107 393.7 313 67.1
CSS0036713 Camellia sinensis var. sinensis HOM05D004474 ORTHO05D005538 4.0e-107 392.1 314 66.6
Sabra16G0050000 Salix brachista HOM05D004474 ORTHO05D005538 6.8e-107 391.3 335 64.2
Migut.J01832 Erythranthe guttata HOM05D004474 ORTHO05D005538 5.7e-106 388.3 257 74.7
THA.LOC104802541 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 9.8e-106 387.5 319 68.0
Actinidia38580 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.8e-105 386.0 277 71.8
Glyma.02G173600 Glycine max HOM05D004474 ORTHO05D005538 2.8e-105 386.0 258 76.0
PGR004G1518 Punica granatum HOM05D004474 ORTHO05D005538 1.8e-104 383.3 314 64.0
RcHm_v2.0_Chr3g0479711 Rosa chinensis HOM05D004474 ORTHO05D005538 1.8e-104 383.3 315 64.4
arahy.Tifrunner.gnm1.ann1.I8NV4T Arachis hypogaea HOM05D004474 ORTHO05D005538 2.0e-103 379.8 253 75.1
arahy.Tifrunner.gnm1.ann1.Q7TVYL Arachis hypogaea HOM05D004474 ORTHO05D005538 2.7e-103 379.4 253 75.1
Oeu024481.1 Olea europaea HOM05D004474 ORTHO05D005538 7.7e-103 377.9 252 72.6
Rhsim04G0096800 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.0e-102 377.5 300 66.3
RhsimUnG0212600 Rhododendron simsii HOM05D004474 ORTHO05D005538 1.0e-102 377.5 300 66.3
Duzib093G0660 Durio zibethinus HOM05D004474 ORTHO05D005538 1.3e-102 377.1 253 75.1
MSTRG.10843 Avicennia marina HOM05D004474 ORTHO05D005538 1.7e-102 376.7 255 73.3
MD14G1058000 Malus domestica HOM05D004474 ORTHO05D005538 2.9e-102 375.9 280 68.9
Lalb_Chr21g0316311 Lupinus albus HOM05D004474 ORTHO05D005538 5.0e-102 375.2 255 75.7
CsaV3_3G038850 Cucumis sativus L. HOM05D004474 ORTHO05D005538 6.6e-102 374.8 263 71.5
Lj5g0007104 Lotus japonicus HOM05D004474 ORTHO05D005538 8.6e-102 374.4 269 70.6
AL4G40500 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 1.1e-101 374.0 319 63.0
Sabra06G0147300 Salix brachista HOM05D004474 ORTHO05D005538 1.9e-101 373.2 307 64.8
DCAR_013545 Daucus carota HOM05D004474 ORTHO05D005538 4.3e-101 372.1 258 71.7
Thhalv10017981m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 4.3e-101 372.1 314 63.7
Carub.0004s2447 Capsella rubella HOM05D004474 ORTHO05D005538 5.6e-101 371.7 314 62.7
Phvul.007G259700 Phaseolus vulgaris HOM05D004474 ORTHO05D005538 5.6e-101 371.7 255 73.3
Sed0015879 Sechium edule HOM05D004474 ORTHO05D005538 5.6e-101 371.7 315 62.9
MBI04_g33963_MAGBIO Magnolia biondii HOM05D004474 ORTHO05D005538 7.2e-101 371.3 276 67.0
TPR.G40276 Trifolium pratense HOM05D004474 ORTHO05D005538 7.2e-101 371.3 279 66.7
VMungo0720G2191 Vigna mungo HOM05D004474 ORTHO05D005538 7.2e-101 371.3 255 73.7
AT2G42130 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 9.5e-101 370.9 314 62.4
Sp4g24340 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.1e-100 369.8 308 63.3
TAR636G3262 Trochodendron aralioides HOM05D004474 ORTHO05D005538 8.0e-100 367.9 286 67.5
MD12G1057400 Malus domestica HOM05D004474 ORTHO05D005538 1.0e-99 367.5 258 70.9
ClCG10G017510 Citrullus lanatus HOM05D004474 ORTHO05D005538 1.4e-99 367.1 328 61.9
Medtr1g054070 Medicago truncatula HOM05D004474 ORTHO05D005538 1.4e-99 367.1 271 68.6
CARHR137190 Cardamine hirsuta HOM05D004474 ORTHO05D005538 1.8e-99 366.7 314 62.1
ECA236G1848 Erigeron canadensis HOM05D004474 ORTHO05D005538 2.3e-99 366.3 311 62.4
Aa31LG1G24090 Aethionema arabicum HOM05D004474 ORTHO05D005538 4.0e-99 365.5 314 63.7
BcaC02g12461 Brassica carinata HOM05D004474 ORTHO05D005538 6.8e-99 364.8 303 64.0
BolC4t21967H Brassica oleracea HOM05D004474 ORTHO05D005538 6.8e-99 364.8 303 64.0
unitig_749.g14029 Utricularia gibba HOM05D004474 ORTHO05D005538 1.2e-98 364.0 262 69.1
AT3G58010 Arabidopsis thaliana HOM05D004474 ORTHO05D005538 2.6e-98 362.8 312 61.5
Thhalv10006122m.g Eutrema salsugineum HOM05D004474 ORTHO05D005538 2.6e-98 362.8 315 61.3
SGA_v2.0_scaffold274G46485 Striga asiatica HOM05D004474 ORTHO05D005538 4.4e-98 362.1 242 74.0
BraA05t19266Z Brassica rapa HOM05D004474 ORTHO05D005538 7.5e-98 361.3 306 63.4
TAR633G0920 Trochodendron aralioides HOM05D004474 ORTHO05D005538 9.8e-98 360.9 252 71.4
BcaB02g08282 Brassica carinata HOM05D004474 ORTHO05D005538 1.3e-97 360.5 308 62.0
AL5G39660 Arabidopsis lyrata HOM05D004474 ORTHO05D005538 2.2e-97 359.8 311 63.3
Ca_12079_v3 Cicer arietinum L. HOM05D004474 ORTHO05D005538 2.2e-97 359.8 262 70.6
PSO384G2014 Papaver somniferum HOM05D004474 ORTHO05D005538 2.2e-97 359.8 268 66.4
A05p02740 Brassica napus HOM05D004474 ORTHO05D005538 3.7e-97 359.0 310 62.3
SalBow1G5519 Salvia bowleyana HOM05D004474 ORTHO05D005538 3.7e-97 359.0 301 61.8
BraA04t16003Z Brassica rapa HOM05D004474 ORTHO05D005538 4.9e-97 358.6 316 62.3
CARHR168330 Cardamine hirsuta HOM05D004474 ORTHO05D005538 8.3e-97 357.8 315 62.2
Carub.0005s2485 Capsella rubella HOM05D004474 ORTHO05D005538 1.1e-96 357.5 321 61.1
Lsat_1_v5_gn_8_75341 Lactuca sativa HOM05D004474 ORTHO05D005538 1.1e-96 357.5 256 69.1
A04p02790 Brassica napus HOM05D004474 ORTHO05D005538 1.8e-96 356.7 316 62.0
C04p03280 Brassica napus HOM05D004474 ORTHO05D005538 2.4e-96 356.3 309 60.8
Peaxi162Scf00258g00522 Petunia axillaris HOM05D004474 ORTHO05D005538 2.4e-96 356.3 257 70.4
Nitab4.5_0002488g0030 Nicotiana tabacum HOM05D004474 ORTHO05D005538 4.1e-96 355.5 257 70.0
PSO339G4529 Papaver somniferum HOM05D004474 ORTHO05D005538 7.0e-96 354.8 318 58.8
vmacro09118 Vaccinium macrocarpon HOM05D004474 ORTHO05D005538 9.2e-96 354.4 314 60.8
Psat0s4417g0040 Pisum sativum HOM05D004474 ORTHO05D005538 1.2e-95 354.0 271 66.8
HanXRQChr06g0176171 Helianthus annuus HOM05D004474 ORTHO05D005538 2.0e-95 353.2 245 70.6
Sopen03g015120 Solanum pennellii HOM05D004474 ORTHO05D005538 7.8e-95 351.3 255 69.4
BcaC02g09981 Brassica carinata HOM05D004474 ORTHO05D005538 1.0e-94 350.9 319 60.8
BolC4t24999H Brassica oleracea HOM05D004474 ORTHO05D005538 1.0e-94 350.9 319 60.8
BcaNung04406 Brassica carinata HOM05D004474 ORTHO05D005538 1.7e-94 350.1 311 61.1
C04p34370 Brassica napus HOM05D004474 ORTHO05D005538 2.3e-94 349.7 316 61.1
Sp5g04710 Schrenkiella parvula HOM05D004474 ORTHO05D005538 2.3e-94 349.7 316 61.4
Sc13g0002280 Simmondsia chinensis HOM05D004474 ORTHO05D005538 3.9e-94 349.0 236 73.3
CAN.G570.5 Capsicum annuum HOM05D004474 ORTHO05D005538 1.1e-93 347.4 255 67.8
Solyc03g062790.3 Solanum lycopersicum HOM05D004474 ORTHO05D005538 4.3e-93 345.5 255 68.6
GSVIVG01033499001 Vitis vinifera HOM05D004474 ORTHO05D005538 5.6e-93 345.1 236 70.8
SGA_v2.0_scaffold105G30490 Striga asiatica HOM05D004474 ORTHO05D005538 1.2e-92 344.0 265 64.9
EL10Ac3g06918 Beta vulgaris HOM05D004474 ORTHO05D005538 1.6e-92 343.6 255 67.5
Peaxi162Scf00480g00018 Petunia axillaris HOM05D004474 ORTHO05D005538 2.8e-92 342.8 257 68.1
Aa31LG10G12710 Aethionema arabicum HOM05D004474 ORTHO05D005538 8.0e-92 341.3 311 59.8
Cc06_g15950 Coffea canephora HOM05D004474 ORTHO05D005538 1.8e-91 340.1 240 70.0
MELO3C009628.2 Cucumis melo HOM05D004474 ORTHO05D005538 2.3e-91 339.7 285 63.9
Potri.006G192200 Populus trichocarpa HOM05D004474 ORTHO05D005538 2.3e-91 339.7 274 66.4
Nn2g15677 Nelumbo nucifera HOM05D004474 ORTHO05D005538 5.2e-91 338.6 254 66.1
Zm00001eb067150 Zea mays HOM05D004474 ORTHO05D005538 1.5e-90 337.0 260 63.8
HanXRQChr05g0132931 Helianthus annuus HOM05D004474 ORTHO05D005538 2.2e-89 333.2 260 65.0
FAN02G3755 Fragaria x ananassa HOM05D004474 ORTHO05D005538 6.4e-89 331.6 324 59.3
Hund24791 Selenicereus undatus HOM05D004474 ORTHO05D005538 8.3e-89 331.3 372 51.1
Nitab4.5_0007056g0010 Nicotiana tabacum HOM05D004474 ORTHO05D005538 5.4e-88 328.6 264 63.6
Oeu033737.2 Olea europaea HOM05D004474 ORTHO05D005538 7.0e-88 328.2 337 53.7
Oeu034264.1 Olea europaea HOM05D004474 ORTHO05D005538 1.6e-87 327.0 252 65.1
PGSC0003DMG401023672 Solanum tuberosum HOM05D004474 ORTHO05D005538 6.0e-87 325.1 256 63.7
TWI74G1538 Tripterygium wilfordii HOM05D004474 ORTHO05D005538 1.0e-86 324.3 314 58.0
Glyma.09G111700 Glycine max HOM05D004474 ORTHO05D005538 8.6e-86 321.2 220 74.1
Sopen10g031040 Solanum pennellii HOM05D004474 ORTHO05D005538 1.5e-85 320.5 256 62.9
Nitab4.5_0003600g0060 Nicotiana tabacum HOM05D004474 ORTHO05D005538 9.5e-85 317.8 244 66.0
Solyc10g080490.2 Solanum lycopersicum HOM05D004474 ORTHO05D005538 9.5e-85 317.8 256 62.1
THA.LOC104819884 Tarenaya hassleriana HOM05D004474 ORTHO05D005538 2.8e-84 316.2 299 57.9
Ah.04g152460 Amaranthus hybridus HOM05D004474 ORTHO05D005538 3.1e-83 312.8 256 62.9
Eucgr.A02451 Eucalyptus grandis HOM05D004474 ORTHO05D005538 6.8e-83 311.6 394 47.2
Aqoxy2G00079 Aquilegia oxysepala HOM05D004474 ORTHO05D005538 7.5e-82 308.1 224 68.8
FAN14G3363 Fragaria x ananassa HOM05D004474 ORTHO05D005538 9.8e-82 307.8 384 50.5
FAN09G2770 Fragaria x ananassa HOM05D004474 ORTHO05D005538 1.1e-80 304.3 387 50.1
Zm00001eb433050 Zea mays HOM05D004474 ORTHO05D005538 1.2e-79 300.8 240 60.8
Actinidia17270 Actinidia chinensis HOM05D004474 ORTHO05D005538 2.3e-78 296.6 233 67.4
ATR0605G151 Amborella trichopoda HOM05D004474 ORTHO05D005538 1.1e-77 294.3 266 54.5
Lj2A366T55 Lonicera japonica HOM05D004474 ORTHO05D005538 2.8e-76 289.7 240 62.1
Manes.08G044700 Manihot esculenta HOM05D004474 ORTHO05D005538 8.1e-76 288.1 315 51.4
Nitab4.5_0000324g0040 Nicotiana tabacum HOM05D004474 ORTHO05D005538 6.8e-75 285.0 227 64.3
CDE02G4436 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 1.5e-74 283.9 286 53.1
Hund19202 Selenicereus undatus HOM05D004474 ORTHO05D005538 1.3e-73 280.8 310 51.0
BcaB08g34564 Brassica carinata HOM05D004474 ORTHO05D005538 8.9e-67 258.1 222 60.4
Haze_19989 Corylus avellana HOM05D004474 ORTHO05D005538 8.7e-62 241.5 197 67.0
AUR62012033 Chenopodium quinoa HOM05D004474 ORTHO05D005538 4.3e-61 239.2 461 37.1
BcaB04g18512 Brassica carinata HOM05D004474 ORTHO05D005538 1.2e-58 231.1 223 54.3
Mapoly0020s0060 Marchantia polymorpha HOM05D004474 ORTHO05D005538 2.6e-58 229.9 251 44.2
Mapoly0033s0063 Marchantia polymorpha HOM05D004474 ORTHO05D005538 3.8e-57 226.1 246 42.7
CAN.G128.40 Capsicum annuum HOM05D004474 ORTHO05D005538 4.9e-57 225.7 221 56.1
HPP92_002995 Vanilla planifolia HOM05D004474 ORTHO05D005538 4.9e-57 225.7 167 64.1
CBR_g20312 Chara braunii HOM05D004474 ORTHO05D005538 1.1e-53 214.5 236 46.2
AUR62015371 Chenopodium quinoa HOM05D004474 ORTHO05D005538 1.1e-53 214.5 255 48.2
Oeu024482.1 Olea europaea HOM05D004474 ORTHO05D005538 1.3e-52 211.1 136 74.3
SMO351G0571 Selaginella moellendorffii HOM05D004474 ORTHO05D005538 1.6e-52 210.7 236 44.5
Duzib106G1296 Durio zibethinus HOM05D004474 ORTHO05D005538 7.6e-50 201.8 143 68.5
AagrBONN_evm.TU.Sc2ySwM_228.3345 Anthoceros agrestis HOM05D004474 ORTHO05D005538 4.9e-41 172.6 183 46.4
Lsat_1_v5_gn_2_74301 Lactuca sativa HOM05D004474 ORTHO05D005538 8.2e-36 155.2 124 62.9
Pp3c10_14100 Physcomitrium patens HOM05D004474 ORTHO05D005538 6.9e-27 125.6 138 47.1
Os04g0665800 Oryza sativa ssp. japonica HOM05D004474 ORTHO05D005538 2.0e-21 107.5 65 83.1
SEGI_00551 Sequoiadendron giganteum HOM05D004474 ORTHO05D005538 6.9e-19 99.0 107 42.1
Sc23g0004130 Simmondsia chinensis HOM05D004474 ORTHO05D005538 6.9e-19 99.0 76 64.5
CDE05G2704 Ceratophyllum demersum HOM05D004474 ORTHO05D005538 6.7e-14 82.4 203 33.0
Lsat_1_v5_gn_8_115961 Lactuca sativa HOM05D004474 ORTHO05D005538 8.8e-14 82.0 70 60.0
PGSC0003DMG400028004 Solanum tuberosum HOM05D004474 ORTHO05D005538 3.7e-12 76.6 73 52.1
Oeu054954.1 Olea europaea HOM05D004474 ORTHO05D005538 6.3e-12 75.9 52 69.2
Hund01181 Selenicereus undatus HOM05D009125 ORTHO05D000110 8.2e-12 75.5 65 53.8
HPP92_002972 Vanilla planifolia HOM05D004474 ORTHO05D005538 1.1e-08 65.1 50 68.0
BcaC09g49569 Brassica carinata HOM05D027121 ORTHO05D094000 8.0e-07 58.9 103 37.9
C01p35130 Brassica napus HOM05D027121 ORTHO05D039971 1.0e-06 58.5 103 37.9
FAN14G4716 Fragaria x ananassa HOM05D004474 ORTHO05D210276 4.0e-06 56.6 41 63.4


User provided reference genes

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