Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 5.2e-139 497.7 245 100.0
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 5.5e-96 354.8 230 73.5
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 6.1e-95 351.3 233 71.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 5.1e-94 348.2 228 73.7
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 8.7e-94 347.4 233 72.1
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 1.1e-93 347.1 233 70.4
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 9.7e-93 344.0 234 71.4
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 8.2e-92 340.9 222 73.0
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 1.8e-91 339.7 224 72.8
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 2.4e-91 339.3 224 72.3
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 3.1e-91 339.0 231 71.4
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 1.5e-90 336.7 224 71.9
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 3.4e-90 335.5 230 68.7
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 3.4e-90 335.5 221 72.4
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 4.5e-90 335.1 240 68.3
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 5.9e-90 334.7 245 67.3
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 7.7e-90 334.3 221 71.9
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 7.7e-90 334.3 221 70.1
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 7.7e-90 334.3 223 71.7
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.0e-89 334.0 234 68.4
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.4e-88 330.1 219 70.8
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.4e-88 330.1 236 66.9
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.9e-88 329.7 230 69.1
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.9e-88 329.7 233 70.0
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.5e-88 329.3 228 71.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.5e-88 329.3 245 66.1
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 4.2e-88 328.6 216 71.8
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 4.2e-88 328.6 223 72.2
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 4.2e-88 328.6 216 70.8
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 7.2e-88 327.8 234 67.1
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 7.2e-88 327.8 230 69.1
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 1.6e-87 326.6 223 70.9
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.6e-87 326.6 230 69.1
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 2.1e-87 326.2 213 75.1
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.7e-87 325.9 244 66.0
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 2.7e-87 325.9 223 71.7
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 4.6e-87 325.1 219 70.3
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 4.6e-87 325.1 227 70.0
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 6.1e-87 324.7 244 65.6
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 6.1e-87 324.7 217 71.0
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.8e-86 323.2 222 71.2
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.3e-86 322.8 213 73.7
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.0e-86 322.4 222 70.3
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.0e-86 322.4 222 70.3
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.9e-86 322.0 224 69.6
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 3.9e-86 322.0 215 69.8
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 3.9e-86 322.0 221 69.2
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 6.7e-86 321.2 221 69.7
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.1e-85 320.5 220 67.7
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.0e-85 319.7 233 67.8
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.0e-85 319.7 215 71.6
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 3.3e-85 318.9 247 63.2
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 5.7e-85 318.2 220 67.7
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 7.4e-85 317.8 220 67.3
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.7e-84 316.6 244 64.8
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.7e-84 316.6 220 67.3
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 2.8e-84 315.8 221 69.2
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 4.8e-84 315.1 236 65.7
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 4.8e-84 315.1 224 67.4
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 8.2e-84 314.3 221 68.3
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 8.2e-84 314.3 230 68.3
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 1.4e-83 313.5 220 66.4
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.8e-83 313.2 221 68.3
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 2.4e-83 312.8 210 70.0
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 4.1e-83 312.0 223 68.6
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 6.9e-83 311.2 214 69.6
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 1.2e-82 310.5 233 67.0
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.2e-82 310.5 227 65.2
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.5e-82 310.1 225 67.6
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 1.5e-82 310.1 229 67.7
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 3.4e-82 308.9 234 63.7
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 4.5e-82 308.5 217 67.7
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.7e-81 306.6 223 66.8
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 2.2e-81 306.2 225 66.7
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.9e-80 303.1 218 68.8
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 1.9e-80 303.1 225 65.8
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 4.2e-80 302.0 219 67.6
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 9.4e-80 300.8 237 64.1
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.6e-79 300.1 217 66.8
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.1e-79 299.7 235 63.0
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.0e-78 297.4 227 61.7
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.1e-77 293.9 224 64.3
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.1e-77 293.9 224 64.3
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 5.7e-77 291.6 252 56.7
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.2e-76 289.7 218 65.1
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.2e-76 289.7 246 59.8
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 2.8e-76 289.3 224 66.5
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 8.2e-76 287.7 229 62.0
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 8.2e-76 287.7 227 60.4
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 3.5e-74 282.3 220 63.2
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.4e-72 274.2 247 59.1
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 6.7e-70 268.1 230 60.0
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 3.6e-63 245.7 228 52.6
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 4.0e-62 242.3 208 61.5
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 5.2e-62 241.9 234 52.1
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.6e-55 220.3 181 60.2
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 2.1e-55 219.9 129 77.5
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.4e-54 217.2 178 60.7
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 8.8e-54 214.5 129 72.1
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.5e-53 213.8 156 67.9
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 1.5e-53 213.8 193 57.0
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.4e-53 212.2 155 67.7
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 9.8e-53 211.1 176 62.5
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 3.7e-52 209.1 184 56.5
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.0e-51 204.9 124 73.4
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.0e-51 204.9 124 73.4
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 4.7e-47 192.2 148 66.2
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 1.1e-43 181.0 150 57.3
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 1.8e-43 180.3 252 37.7
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 3.5e-42 176.0 104 76.0
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 3.9e-41 172.6 134 63.4
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.4e-37 159.5 106 67.9
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 3.7e-36 156.0 138 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 9.2e-35 151.4 165 48.5
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 2.0e-34 150.2 114 66.7
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.2e-30 135.6 76 80.3
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.8e-29 132.1 76 77.6
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.8e-29 132.1 76 77.6
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.5e-29 131.7 75 80.0
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-28 130.6 76 78.9
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-28 129.8 76 77.6
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-28 129.8 76 77.6
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-28 129.0 75 78.7
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.9e-28 129.0 75 78.7
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 2.3e-25 120.2 123 52.8
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.1e-24 117.9 67 77.6
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 3.6e-23 112.8 97 61.9
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 8.1e-23 111.7 102 58.8
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.1e-22 109.8 66 74.2
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 5.2e-22 109.0 95 61.1
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 2.7e-18 96.7 96 52.1
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 3.0e-17 93.2 58 69.0
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 3.9e-17 92.8 72 61.1
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 8.7e-17 91.7 55 70.9
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.1e-16 91.3 76 63.2
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 3.6e-15 86.3 53 69.8
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 4.7e-15 85.9 143 36.4
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 3.1e-14 83.2 63 61.9
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.0e-14 82.8 46 76.1
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 9.0e-14 81.6 184 28.8
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 7.6e-13 78.6 64 57.8
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 1.3e-12 77.8 176 30.1
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 1.3e-12 77.8 170 29.4
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 8.4e-12 75.1 67 50.7
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 1.6e-10 70.9 162 27.2
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 2.7e-10 70.1 169 25.4
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 6.0e-10 68.9 168 27.4
Cre10.g418700 Chlamydomonas reinhardtii HOM05D005267 ORTHO05D006303 1.7e-09 67.4 174 29.9
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 8.7e-09 65.1 34 79.4
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.1e-08 64.7 213 21.6
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 2.5e-08 63.5 35 77.1
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.3e-07 61.2 136 27.9


User provided reference genes

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