Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 5.6e-177 624.4 372 100.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.5e-57 227.6 383 47.3
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.7e-56 224.2 370 55.4
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.7e-56 224.2 392 48.2
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 2.1e-54 217.2 424 42.9
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 1.8e-50 204.1 396 43.4
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 6.9e-50 202.2 394 42.6
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 9.0e-50 201.8 378 42.9
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 3.4e-49 199.9 418 39.2
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 3.4e-49 199.9 381 44.9
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 7.6e-49 198.7 363 43.3
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.0e-48 198.4 384 43.8
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-48 198.0 387 41.9
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.7e-48 197.6 397 44.3
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.9e-48 196.8 403 46.7
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 4.9e-48 196.1 384 43.5
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 4.9e-48 196.1 372 42.7
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.1e-47 194.9 377 43.5
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.9e-47 194.1 384 43.0
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.2e-47 193.4 403 41.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.2e-47 193.4 362 43.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.6e-46 191.0 396 40.9
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.1e-46 190.7 410 43.7
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.1e-46 190.7 398 40.5
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 2.1e-46 190.7 375 42.7
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 6.0e-46 189.1 399 40.4
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 1.0e-45 188.3 393 41.0
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 1.3e-45 188.0 397 42.1
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.9e-44 184.1 410 44.9
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 4.3e-44 183.0 369 50.9
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.7e-44 182.6 366 40.7
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 1.6e-43 181.0 416 39.9
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.4e-42 177.9 257 55.6
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.4e-42 177.2 383 41.0
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 3.1e-42 176.8 412 37.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 4.1e-42 176.4 389 38.8
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 9.0e-42 175.3 396 37.4
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.6e-41 172.2 366 39.6
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.8e-40 169.9 382 44.8
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.0e-40 169.5 382 45.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.0e-40 169.5 395 39.5
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.5e-40 168.7 385 46.8
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 1.4e-39 167.9 258 45.0
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.4e-39 167.9 377 40.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 9.3e-39 165.2 372 49.2
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.6e-38 164.5 382 39.5
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 1.6e-38 164.5 383 41.0
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 4.6e-38 162.9 408 36.8
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.3e-37 161.4 233 48.1
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 1.8e-37 161.0 399 43.9
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.8e-37 161.0 383 47.0
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 2.3e-37 160.6 397 38.0
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.9e-37 159.8 375 39.2
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.1e-37 159.5 411 36.7
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.5e-36 157.9 362 38.7
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 3.3e-36 156.8 402 40.3
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 9.7e-36 155.2 301 42.9
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.3e-35 154.8 373 39.4
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.2e-35 154.1 375 41.1
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.2e-35 154.1 390 36.9
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.8e-35 153.7 414 39.1
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 3.7e-35 153.3 374 42.8
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 6.3e-35 152.5 395 38.0
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.3e-35 152.5 232 46.1
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.8e-34 151.0 276 41.3
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 4.1e-34 149.8 374 35.0
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 6.9e-34 149.1 255 43.9
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 5.9e-33 146.0 378 36.0
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.9e-33 146.0 218 49.5
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.2e-32 144.1 258 44.2
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 6.5e-32 142.5 377 42.2
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 8.5e-32 142.1 435 39.5
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.1e-31 141.7 366 35.2
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.2e-31 140.2 258 42.2
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.2e-31 140.2 245 42.9
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.2e-31 140.2 381 44.6
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 3.6e-30 136.7 232 41.4
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.0e-29 135.2 274 44.5
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-29 134.8 234 57.3
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 5.1e-29 132.9 225 52.0
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.7e-29 132.5 247 53.4
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 6.7e-29 132.5 307 38.8
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.5e-28 131.3 126 81.0
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.3e-28 130.2 369 37.9
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 4.4e-28 129.8 411 33.8
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.4e-28 129.8 213 56.8
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 2.2e-27 127.5 180 43.9
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 3.7e-27 126.7 371 35.3
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 4.8e-27 126.3 222 41.0
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 4.8e-27 126.3 307 38.1
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 8.2e-27 125.6 304 47.0
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 1.4e-26 124.8 235 40.4
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.4e-26 124.0 225 39.1
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 3.1e-26 123.6 223 55.2
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 5.3e-26 122.9 368 32.9
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.2e-25 121.7 226 38.9
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 3.4e-25 120.2 240 51.2
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 5.9e-25 119.4 298 37.9
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.3e-24 118.2 129 58.9
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 3.8e-24 116.7 363 35.0
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 1.1e-23 115.2 305 40.0
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.1e-23 115.2 413 39.5
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 9.4e-23 112.1 385 31.2
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.6e-22 111.3 375 33.3
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.6e-22 111.3 131 51.1
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.0e-21 108.6 361 39.1
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 1.4e-21 108.2 136 46.3
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.3e-21 107.5 61 82.0
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 8.8e-21 105.5 325 32.6
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.1e-20 105.1 136 46.3
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.1e-20 105.1 136 46.3
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.1e-20 105.1 61 80.3
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.3e-20 103.6 169 46.7
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 4.4e-20 103.2 136 46.3
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 7.4e-20 102.4 132 47.0
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 7.4e-20 102.4 137 46.7
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 7.4e-20 102.4 142 47.9
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 1.7e-19 101.3 376 32.7
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 2.8e-19 100.5 127 48.8
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.7e-19 100.1 371 31.5
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 3.7e-19 100.1 129 47.3
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.8e-19 99.8 188 37.2
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 4.8e-19 99.8 365 31.8
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 8.2e-19 99.0 127 46.5
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.8e-18 97.8 124 47.6
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 2.4e-18 97.4 375 40.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.1e-18 96.7 146 42.5
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 5.3e-18 96.3 369 29.0
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 5.3e-18 96.3 119 49.6
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 7.0e-18 95.9 124 46.0
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.6e-17 94.0 121 47.9
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 2.6e-17 94.0 117 47.9
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 2.6e-17 94.0 117 47.9
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.6e-17 94.0 121 47.9
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 7.7e-17 92.4 117 49.6
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 7.7e-17 92.4 121 47.1
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 7.7e-17 92.4 121 47.1
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 7.7e-17 92.4 121 47.1
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 2.2e-16 90.9 183 38.8
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 3.8e-16 90.1 363 31.1
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.8e-16 90.1 136 40.4
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 3.8e-16 90.1 159 44.0
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-15 88.2 52 75.0
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-15 88.2 57 66.7
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.9e-15 87.8 95 52.6
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 5.5e-15 86.3 70 61.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 5.5e-15 86.3 82 56.1
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 7.2e-15 85.9 117 56.4
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 7.2e-15 85.9 182 35.7
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 7.2e-15 85.9 155 49.7
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 9.4e-15 85.5 121 52.1
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-14 85.1 117 56.4
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.2e-14 85.1 49 83.7
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.6e-14 84.7 54 74.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.1e-14 84.3 182 36.3
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.7e-14 84.0 41 87.8
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 9.7e-12 75.5 145 35.2
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.7e-11 73.6 56 57.1
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-10 71.6 52 59.6
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 1.8e-10 71.2 130 34.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.4e-10 70.9 56 60.7
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 4.1e-10 70.1 140 35.7
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 3.5e-09 67.0 312 28.2
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 4.5e-09 66.6 72 48.6
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.0e-08 65.5 54 53.7
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.8e-08 63.5 156 32.1
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 5.5e-07 59.7 136 33.1
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 9.4e-07 58.9 70 50.0
QL07p024250 Quercus lobata HOM05D046221 ORTHO05D014310 9.4e-07 58.9 137 29.9
Rhsim03G0005000 Rhododendron simsii HOM05D003648 ORTHO05D014310 1.6e-06 58.2 138 30.4
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 3.6e-06 57.0 291 26.8
Manes.08G044100 Manihot esculenta HOM05D014635 ORTHO05D014310 8.0e-06 55.8 196 29.1


User provided reference genes

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