Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.30 Carica papaya HOM05D004880 ORTHO05D006130 1.0e-235 819.7 408 100.0
RcHm_v2.0_Chr3g0478791 Rosa chinensis HOM05D004880 ORTHO05D006130 4.4e-191 671.4 408 78.9
Duzib093G1906 Durio zibethinus HOM05D004880 ORTHO05D006130 4.1e-189 664.8 408 77.7
Haze_20052 Corylus avellana HOM05D004880 ORTHO05D006130 5.4e-189 664.5 408 78.4
Haze_20059 Corylus avellana HOM05D004880 ORTHO05D006130 1.6e-188 662.9 408 78.2
Duzib128G0581 Durio zibethinus HOM05D004880 ORTHO05D006130 1.0e-187 660.2 408 77.2
Thecc.05G178700 Theobroma cacao HOM05D004880 ORTHO05D006130 1.0e-187 660.2 408 77.9
Prupe.7G084800 Prunus persica HOM05D004880 ORTHO05D006130 1.5e-186 656.4 408 77.2
FvH4_6g21550 Fragaria vesca HOM05D004880 ORTHO05D006130 3.3e-186 655.2 408 76.5
FAN14G3637 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.3e-186 655.2 408 76.5
Atru.chr8.1200 Acer truncatum HOM05D004880 ORTHO05D006130 5.6e-186 654.4 410 76.1
CANSAT64G2835 Cannabis sativa HOM05D004880 ORTHO05D006130 1.2e-185 653.3 411 75.9
Dinv24034 Davidia involucrata HOM05D004880 ORTHO05D006130 1.8e-184 649.4 409 76.5
MD14G1051200 Malus domestica HOM05D004880 ORTHO05D006130 1.8e-184 649.4 408 74.8
Sabra16G0064000 Salix brachista HOM05D004880 ORTHO05D006130 8.9e-184 647.1 408 75.2
TWI74G0273 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 1.2e-183 646.7 408 74.5
Potri.006G196200 Populus trichocarpa HOM05D004880 ORTHO05D006130 3.4e-183 645.2 408 74.8
TWI77G0767 Tripterygium wilfordii HOM05D004880 ORTHO05D006130 3.4e-183 645.2 408 75.2
CiPaw.09G027000 Carya illinoinensis HOM05D004880 ORTHO05D006130 4.4e-183 644.8 408 76.0
Potri.016G062100 Populus trichocarpa HOM05D004880 ORTHO05D006130 4.4e-183 644.8 408 74.5
Manes.08G040500 Manihot esculenta HOM05D004880 ORTHO05D006130 7.5e-183 644.0 409 75.3
Sabra06G0150800 Salix brachista HOM05D004880 ORTHO05D006130 7.5e-183 644.0 408 74.8
GSVIVG01033434001 Vitis vinifera HOM05D004880 ORTHO05D006130 9.8e-183 643.7 408 76.0
Eucgr.K01870 Eucalyptus grandis HOM05D004880 ORTHO05D006130 1.3e-182 643.3 408 76.5
QL07p025081 Quercus lobata HOM05D004880 ORTHO05D006130 1.3e-182 643.3 407 77.4
QL07p025096 Quercus lobata HOM05D004880 ORTHO05D006130 1.3e-182 643.3 407 77.4
QL10p026397 Quercus lobata HOM05D004880 ORTHO05D006130 1.7e-182 642.9 407 76.7
Gohir.D09G125600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 6.4e-182 641.0 408 75.2
Gorai.006G144600 Gossypium raimondii HOM05D004880 ORTHO05D006130 6.4e-182 641.0 408 75.2
MD12G1052800 Malus domestica HOM05D004880 ORTHO05D006130 1.4e-181 639.8 408 74.8
Actinidia22070 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.4e-181 639.0 408 76.7
FAN02G2738 Fragaria x ananassa HOM05D004880 ORTHO05D006130 2.4e-181 639.0 398 75.9
FAN05G5497 Fragaria x ananassa HOM05D004880 ORTHO05D006130 5.4e-181 637.9 398 76.1
Gohir.A09G129600 Gossypium hirsutum HOM05D004880 ORTHO05D006130 9.2e-181 637.1 408 75.0
Ciclev10011869m.g Citrus clementina HOM05D004880 ORTHO05D006130 2.7e-180 635.6 409 74.8
PGR142G4320 Punica granatum HOM05D004880 ORTHO05D006130 6.0e-180 634.4 409 75.3
FAN09G2092 Fragaria x ananassa HOM05D004880 ORTHO05D006130 3.9e-179 631.7 400 75.2
COL.COLO4_29395 Corchorus olitorius HOM05D004880 ORTHO05D006130 8.6e-179 630.6 408 75.0
Rhsim03G0002700 Rhododendron simsii HOM05D004880 ORTHO05D006130 3.3e-178 628.6 408 74.0
RhsimUnG0014100 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.6e-177 626.3 408 73.8
CiPaw.10G024300 Carya illinoinensis HOM05D004880 ORTHO05D006130 1.8e-176 622.9 408 74.8
Manes.09G040000 Manihot esculenta HOM05D004880 ORTHO05D006130 2.0e-175 619.4 408 73.8
Actinidia38600 Actinidia chinensis HOM05D004880 ORTHO05D006130 2.2e-174 615.9 408 73.3
ClCG04G001360 Citrullus lanatus HOM05D004880 ORTHO05D006130 2.9e-174 615.5 408 73.3
Nitab4.5_0005082g0030 Nicotiana tabacum HOM05D004880 ORTHO05D006130 1.1e-173 613.6 408 70.6
Nn7g35913 Nelumbo nucifera HOM05D004880 ORTHO05D006130 1.9e-173 612.8 408 71.6
TAR636G0255 Trochodendron aralioides HOM05D004880 ORTHO05D006130 7.1e-173 610.9 408 72.1
CsaV3_4G031170 Cucumis sativus L. HOM05D004880 ORTHO05D006130 9.2e-173 610.5 408 73.8
TAR633G2404 Trochodendron aralioides HOM05D004880 ORTHO05D006130 2.1e-172 609.4 408 72.1
Lj1A1134T63 Lonicera japonica HOM05D004880 ORTHO05D006130 3.5e-172 608.6 410 72.2
MELO3C008990.2 Cucumis melo HOM05D004880 ORTHO05D006130 7.8e-172 607.4 408 73.5
THA.LOC104802772 Tarenaya hassleriana HOM05D004880 ORTHO05D006130 1.0e-171 607.1 409 72.9
Glyma.19G204500 Glycine max HOM05D004880 ORTHO05D006130 3.0e-171 605.5 407 72.2
CAN.G8.1 Capsicum annuum HOM05D004880 ORTHO05D006130 5.1e-171 604.7 402 69.7
EL10Ac3g06851 Beta vulgaris HOM05D004880 ORTHO05D006130 2.5e-170 602.4 403 71.2
Aqoxy2G00483 Aquilegia oxysepala HOM05D004880 ORTHO05D006130 7.3e-170 600.9 408 70.1
AUR62015294 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.2e-169 600.1 409 69.9
Sc13g0002510 Simmondsia chinensis HOM05D004880 ORTHO05D006130 1.2e-169 600.1 408 69.6
Glyma.03G207000 Glycine max HOM05D004880 ORTHO05D006130 2.1e-169 599.4 407 71.7
Nitab4.5_0002532g0010 Nicotiana tabacum HOM05D004880 ORTHO05D006130 2.8e-169 599.0 408 69.1
Sed0002439 Sechium edule HOM05D004880 ORTHO05D006130 2.8e-169 599.0 408 72.5
PGSC0003DMG400001105 Solanum tuberosum HOM05D004880 ORTHO05D006130 3.6e-169 598.6 408 68.1
Migut.J01871 Erythranthe guttata HOM05D004880 ORTHO05D006130 4.7e-169 598.2 408 70.8
MSTRG.26074 Avicennia marina HOM05D004880 ORTHO05D006130 1.4e-168 596.7 408 72.3
SalBow1G7250 Salvia bowleyana HOM05D004880 ORTHO05D006130 1.8e-168 596.3 405 71.1
Thhalv10006516m.g Eutrema salsugineum HOM05D004880 ORTHO05D006130 3.1e-168 595.5 412 70.9
Lj1g0004925 Lotus japonicus HOM05D004880 ORTHO05D006130 5.2e-168 594.7 404 71.3
Sopen03g011420 Solanum pennellii HOM05D004880 ORTHO05D006130 6.8e-168 594.3 401 68.6
Solyc03g051970.3 Solanum lycopersicum HOM05D004880 ORTHO05D006130 2.0e-167 592.8 401 68.6
Lsat_1_v5_gn_1_60360 Lactuca sativa HOM05D004880 ORTHO05D006130 5.8e-167 591.3 402 70.1
Sp5g04380 Schrenkiella parvula HOM05D004880 ORTHO05D006130 5.8e-167 591.3 412 70.4
SGA_v2.0_scaffold274G46503 Striga asiatica HOM05D004880 ORTHO05D006130 2.2e-166 589.3 402 69.9
HanXRQChr01g0024571 Helianthus annuus HOM05D004880 ORTHO05D006130 2.9e-166 589.0 410 70.0
SalBow6G2644 Salvia bowleyana HOM05D004880 ORTHO05D006130 3.8e-166 588.6 408 70.3
BcaC08g44920 Brassica carinata HOM05D004880 ORTHO05D006130 4.9e-166 588.2 412 69.7
C06p25460 Brassica napus HOM05D004880 ORTHO05D006130 4.9e-166 588.2 412 69.7
BolC6t37708H Brassica oleracea HOM05D004880 ORTHO05D006130 4.9e-166 588.2 412 69.7
AT3G58490 Arabidopsis thaliana HOM05D004880 ORTHO05D006130 8.4e-166 587.4 409 69.9
DCAR_017041 Daucus carota HOM05D004880 ORTHO05D006130 8.4e-166 587.4 409 70.7
ECA248G1283 Erigeron canadensis HOM05D004880 ORTHO05D006130 1.9e-165 586.3 403 71.5
A07p24150 Brassica napus HOM05D004880 ORTHO05D006130 4.2e-165 585.1 412 69.7
Oeu063855.2 Olea europaea HOM05D004880 ORTHO05D006130 4.2e-165 585.1 439 66.7
BraA07t30059Z Brassica rapa HOM05D004880 ORTHO05D006130 7.1e-165 584.3 412 69.4
CARHR168890 Cardamine hirsuta HOM05D004880 ORTHO05D006130 1.2e-164 583.6 409 69.4
Cc06_g23350 Coffea canephora HOM05D004880 ORTHO05D006130 1.2e-164 583.6 408 67.9
Aa31LG10G13060 Aethionema arabicum HOM05D004880 ORTHO05D006130 1.6e-164 583.2 409 68.7
VMungo1383G0203 Vigna mungo HOM05D004880 ORTHO05D006130 2.7e-164 582.4 407 69.5
AL5G40260 Arabidopsis lyrata HOM05D004880 ORTHO05D006130 1.3e-163 580.1 412 69.9
Ca_09100_v3 Cicer arietinum L. HOM05D004880 ORTHO05D006130 1.3e-163 580.1 408 68.1
Phvul.001G200400 Phaseolus vulgaris HOM05D004880 ORTHO05D006130 6.6e-163 577.8 407 68.1
Aa31LG1G24310 Aethionema arabicum HOM05D004880 ORTHO05D006130 5.6e-162 574.7 406 69.0
Lalb_Chr01g0017621 Lupinus albus HOM05D004880 ORTHO05D006130 5.6e-162 574.7 401 70.1
MBI04_g09734_MAGBIO Magnolia biondii HOM05D004880 ORTHO05D006130 1.2e-161 573.5 400 70.0
TPR.G32306 Trifolium pratense HOM05D004880 ORTHO05D006130 1.6e-161 573.2 408 67.6
HanXRQChr14g0438921 Helianthus annuus HOM05D004880 ORTHO05D006130 2.8e-161 572.4 403 69.0
Ah.13g075550 Amaranthus hybridus HOM05D004880 ORTHO05D006130 8.1e-161 570.9 410 67.1
DCAR_013674 Daucus carota HOM05D004880 ORTHO05D006130 2.4e-160 569.3 423 65.7
Carub.0005s2524 Capsella rubella HOM05D004880 ORTHO05D006130 3.1e-160 568.9 409 67.7
Lalb_Chr25g0287641 Lupinus albus HOM05D004880 ORTHO05D006130 4.0e-160 568.5 402 69.2
Medtr7g107270 Medicago truncatula HOM05D004880 ORTHO05D006130 5.3e-160 568.2 408 66.7
arahy.Tifrunner.gnm1.ann1.LHW1VF Arachis hypogaea HOM05D004880 ORTHO05D006130 6.9e-160 567.8 404 69.3
arahy.Tifrunner.gnm1.ann1.4QW8I5 Arachis hypogaea HOM05D004880 ORTHO05D006130 2.0e-159 566.2 404 69.1
Lsat_1_v5_gn_2_57080 Lactuca sativa HOM05D004880 ORTHO05D006130 9.9e-159 563.9 403 69.0
CSS0031126 Camellia sinensis var. sinensis HOM05D004880 ORTHO05D006130 2.9e-158 562.4 408 69.4
Lj2A362T41 Lonicera japonica HOM05D004880 ORTHO05D006130 3.8e-158 562.0 494 59.9
PSO384G1868 Papaver somniferum HOM05D004880 ORTHO05D006130 4.2e-157 558.5 405 65.9
PSO339G2581 Papaver somniferum HOM05D004880 ORTHO05D006130 5.4e-157 558.1 405 65.7
vmacro12554 Vaccinium macrocarpon HOM05D004880 ORTHO05D006130 8.7e-155 550.8 358 73.7
ATR0001G036 Amborella trichopoda HOM05D004880 ORTHO05D006130 1.9e-154 549.7 408 68.4
TAR623G0618 Trochodendron aralioides HOM05D004880 ORTHO05D006130 3.3e-154 548.9 360 72.2
Peaxi162Scf00463g00322 Petunia axillaris HOM05D004880 ORTHO05D006130 7.3e-154 547.7 408 65.2
AUR62032743 Chenopodium quinoa HOM05D004880 ORTHO05D006130 1.0e-147 527.3 409 63.6
Os03g0805400 Oryza sativa ssp. japonica HOM05D004880 ORTHO05D006130 1.0e-147 527.3 402 62.9
Cfa020124 Carpinus fangiana HOM05D004880 ORTHO05D006130 1.8e-144 516.5 313 80.5
PSO384G4146 Papaver somniferum HOM05D004880 ORTHO05D006130 1.8e-144 516.5 405 61.0
PSO339G4595 Papaver somniferum HOM05D004880 ORTHO05D006130 2.4e-144 516.2 405 60.7
ECA238G1506 Erigeron canadensis HOM05D004880 ORTHO05D001620 5.3e-144 515.0 351 69.8
HPP92_023567 Vanilla planifolia HOM05D004880 ORTHO05D006130 2.8e-137 492.7 402 58.5
Zm00001eb061460 Zea mays HOM05D004880 ORTHO05D006130 1.8e-136 490.0 403 58.6
HPP92_007945 Vanilla planifolia HOM05D004880 ORTHO05D006130 7.1e-133 478.0 402 58.2
SHI30063 Sapria himalayana HOM05D004880 ORTHO05D006130 1.6e-132 476.9 408 59.8
SEGI_41601 Sequoiadendron giganteum HOM05D004880 ORTHO05D006130 1.6e-129 466.8 416 55.5
Ah.04g153030 Amaranthus hybridus HOM05D004880 ORTHO05D006130 7.7e-127 458.0 315 71.1
CDE10G0990 Ceratophyllum demersum HOM05D004880 ORTHO05D006130 8.5e-118 427.9 378 58.2
Psat3g026000 Pisum sativum HOM05D004880 ORTHO05D006130 2.4e-112 409.8 273 70.0
Zm00001eb212610 Zea mays HOM05D004880 ORTHO05D006130 2.3e-107 393.3 313 61.3
SMO356G0032 Selaginella moellendorffii HOM05D004880 ORTHO05D006130 1.1e-106 391.0 409 49.4
Hund19219 Selenicereus undatus HOM05D004880 ORTHO05D006130 1.1e-106 391.0 273 67.4
Hma1.2p1_0124F.1_g058410 Hydrangea macrophylla HOM05D004880 ORTHO05D006130 2.2e-105 386.7 267 71.5
Rhsim03G0002900 Rhododendron simsii HOM05D004880 ORTHO05D006130 1.5e-98 364.0 417 52.8
Mapoly0023s0042 Marchantia polymorpha HOM05D004880 ORTHO05D006130 1.7e-97 360.5 420 45.5
AagrBONN_evm.TU.Sc2ySwM_362.985 Anthoceros agrestis HOM05D004880 ORTHO05D006130 1.8e-91 340.5 424 45.5
Pp3c11_15430 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.0e-86 322.4 409 43.0
Lalb_Chr20g0111081 Lupinus albus HOM05D004880 ORTHO05D006130 1.2e-79 301.2 253 63.2
Pp3c2_26340 Physcomitrium patens HOM05D004880 ORTHO05D006130 5.2e-75 285.8 443 39.3
Oeu057591.1 Olea europaea HOM05D004880 ORTHO05D006130 1.3e-70 271.2 176 71.0
Dinv16340 Davidia involucrata HOM05D004880 ORTHO05D006130 1.5e-69 267.7 161 81.4
Dinv16341 Davidia involucrata HOM05D004880 ORTHO05D006130 2.1e-68 263.8 173 75.7
Actinidia17290 Actinidia chinensis HOM05D000477 ORTHO05D000338 4.0e-67 259.6 176 70.5
HPP92_020367 Vanilla planifolia HOM05D004880 ORTHO05D006130 3.0e-62 243.4 213 54.5
FvH4_1g29340 Fragaria vesca HOM05D004880 ORTHO05D006130 5.4e-56 222.6 135 77.0
Zm00001eb272460 Zea mays HOM05D004880 ORTHO05D006130 7.8e-55 218.8 164 60.4
CBR_g27899 Chara braunii HOM05D004880 ORTHO05D006130 3.9e-54 216.5 339 36.3
Lalb_Chr20g0111071 Lupinus albus HOM05D004880 ORTHO05D006130 4.2e-48 196.4 112 78.6
HPP92_020366 Vanilla planifolia HOM05D004880 ORTHO05D006130 1.2e-47 194.9 193 52.3
Zm00001eb359710 Zea mays HOM05D004880 ORTHO05D006130 6.6e-46 189.1 148 59.5
RhsimUnG0012500 Rhododendron simsii HOM05D001884 ORTHO05D001890 6.9e-35 152.5 92 77.2
BcaB02g07520 Brassica carinata HOM05D004880 ORTHO05D006130 2.4e-32 144.1 100 66.0
RhsimUnG0013900 Rhododendron simsii HOM05D004880 ORTHO05D050686 2.6e-26 124.0 97 67.0
RcHm_v2.0_Chr2g0108291 Rosa chinensis HOM05D004880 ORTHO05D006130 2.0e-18 97.8 70 64.3
RcHm_v2.0_Chr2g0108301 Rosa chinensis HOM05D004880 ORTHO05D050686 2.0e-18 97.8 84 59.5
Cfa025525 Carpinus fangiana HOM05D004880 ORTHO05D125807 6.5e-17 92.8 221 29.9
Migut.J01865 Erythranthe guttata HOM05D004880 ORTHO05D006130 2.2e-12 77.8 57 68.4


User provided reference genes

Program Settings