Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 4.5e-61 237.7 113 100.0
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.0e-49 198.0 106 85.8
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 4.0e-49 198.0 106 85.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 8.8e-49 196.8 106 85.8
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.5e-48 196.1 106 85.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.5e-48 196.1 106 85.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.3e-48 194.9 106 84.9
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 5.7e-48 194.1 106 84.9
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-47 193.0 109 82.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 8.2e-47 190.3 106 82.1
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 8.2e-47 190.3 106 82.1
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 8.2e-47 190.3 112 81.2
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 8.2e-47 190.3 112 81.2
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 8.2e-47 190.3 106 83.0
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.1e-46 189.9 106 84.0
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.1e-46 188.3 113 77.9
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.1e-46 188.3 103 85.4
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 4.1e-46 188.0 112 80.4
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 4.1e-46 188.0 114 78.1
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.1e-46 188.0 107 83.2
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 7.0e-46 187.2 103 84.5
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 1.2e-45 186.4 113 77.0
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 1.2e-45 186.4 113 77.0
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 1.2e-45 186.4 113 77.0
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.2e-45 186.4 113 77.0
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.6e-45 186.0 109 81.7
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 2.7e-45 185.3 106 81.1
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.5e-45 184.9 96 86.5
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.5e-45 184.9 96 86.5
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 4.5e-45 184.5 106 82.1
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 4.5e-45 184.5 106 80.2
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 5.9e-45 184.1 109 78.9
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 7.7e-45 183.7 106 80.2
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.0e-44 183.3 93 88.2
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.3e-44 183.0 95 86.3
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 2.2e-44 182.2 106 80.2
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 8.5e-44 180.3 114 75.4
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.9e-43 179.1 107 78.5
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.2e-43 177.9 108 76.9
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.6e-42 176.0 102 80.4
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 2.1e-42 175.6 97 84.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.1e-42 175.6 102 80.4
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.7e-42 175.3 116 70.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.7e-42 175.3 102 79.4
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.6e-42 174.9 93 84.9
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 3.6e-42 174.9 96 83.3
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.7e-42 174.5 110 76.4
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 4.7e-42 174.5 110 76.4
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 4.7e-42 174.5 116 73.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 6.1e-42 174.1 109 75.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 6.1e-42 174.1 120 72.5
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 6.1e-42 174.1 93 84.9
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 8.0e-42 173.7 97 84.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.0e-41 173.3 107 73.8
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.0e-41 173.3 107 75.7
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.4e-41 172.9 109 78.9
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.3e-41 172.2 93 82.8
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 3.0e-41 171.8 107 73.8
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 5.2e-41 171.0 105 79.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 6.8e-41 170.6 107 72.9
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.8e-41 170.6 92 82.6
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 8.8e-41 170.2 97 80.4
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.2e-40 169.9 93 81.7
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.5e-40 169.5 97 81.4
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 1.5e-40 169.5 115 70.4
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.0e-40 169.1 97 83.5
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 3.4e-40 168.3 99 80.8
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.4e-40 168.3 113 73.5
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.4e-40 168.3 113 73.5
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 4.4e-40 167.9 96 81.2
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 4.4e-40 167.9 96 81.2
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.4e-40 167.9 93 81.7
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 4.4e-40 167.9 110 72.7
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 5.7e-40 167.5 97 79.4
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 5.7e-40 167.5 109 73.4
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 7.5e-40 167.2 109 71.6
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 9.8e-40 166.8 107 72.9
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.3e-39 166.4 96 80.2
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 2.2e-39 165.6 106 72.6
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.8e-39 165.2 102 74.5
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.8e-39 165.2 114 70.2
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.8e-39 165.2 100 81.0
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 6.3e-39 164.1 96 79.2
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 8.3e-39 163.7 105 73.3
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 1.1e-38 163.3 103 72.8
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.8e-38 162.5 105 72.4
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 2.4e-38 162.2 113 72.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.1e-38 161.4 109 67.9
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 4.1e-38 161.4 114 67.5
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.1e-38 161.4 106 70.8
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 4.1e-38 161.4 91 78.0
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 5.4e-38 161.0 107 72.0
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 5.4e-38 161.0 105 72.4
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 7.0e-38 160.6 103 70.9
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.2e-37 159.8 111 66.7
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.2e-37 159.8 111 69.4
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.6e-37 159.5 106 71.7
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 1.6e-37 159.5 115 67.0
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.6e-37 159.5 97 78.4
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 2.0e-37 159.1 106 69.8
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 2.7e-37 158.7 107 69.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.7e-37 158.7 111 68.5
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.7e-37 158.7 101 73.3
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.5e-37 158.3 95 77.9
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 4.5e-37 157.9 114 66.7
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 5.9e-37 157.5 107 68.2
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 5.9e-37 157.5 108 67.6
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 1.3e-36 156.4 110 68.2
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 107 67.3
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.3e-36 156.4 116 63.8
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.3e-36 156.4 107 66.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.7e-36 156.0 107 69.2
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 2.9e-36 155.2 105 66.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.8e-36 154.8 95 75.8
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 5.0e-36 154.5 107 68.2
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 6.5e-36 154.1 114 64.9
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 6.5e-36 154.1 109 67.9
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.5e-35 152.9 103 68.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 114 63.2
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 114 64.0
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.9e-35 152.5 109 67.9
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.5e-35 152.1 99 70.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 2.5e-35 152.1 105 68.6
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.2e-35 151.8 105 69.5
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 4.2e-35 151.4 82 82.9
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 5.5e-35 151.0 107 65.4
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 7.2e-35 150.6 105 67.6
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 7.2e-35 150.6 105 67.6
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.2e-34 149.8 107 64.5
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.2e-34 149.8 107 64.5
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.2e-34 149.8 94 73.4
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.6e-34 149.4 105 67.6
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.6e-34 149.4 105 67.6
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 3.6e-34 148.3 77 81.8
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.6e-34 148.3 88 71.6
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 4.7e-34 147.9 93 72.0
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 3.4e-32 141.7 94 70.2
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 7.5e-32 140.6 107 63.6
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.8e-30 136.0 81 71.6
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 4.1e-30 134.8 83 78.3
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.3e-28 129.0 81 67.9
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.8e-25 119.4 58 93.1
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.8e-25 119.4 92 63.0
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 3.2e-22 108.6 69 71.0
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 9.2e-22 107.1 96 52.1
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 9.2e-22 107.1 96 61.5
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 3.0e-20 102.1 93 55.9
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 3.3e-19 98.6 61 77.0
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 1.1e-17 93.6 95 50.5
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 2.3e-17 92.4 61 68.9
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 7.5e-16 87.4 73 52.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 1.9e-14 82.8 60 68.3
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.2e-14 82.0 71 53.5
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 7.0e-14 80.9 102 50.0
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 2.3e-12 75.9 64 54.7
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 8.9e-09 63.9 56 53.6
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 2.6e-08 62.4 49 63.3


User provided reference genes

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