Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 1.7e-105 386.0 186 100.0
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 7.6e-98 360.5 186 90.3
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 1.3e-97 359.8 186 91.4
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 1.7e-97 359.4 186 90.9
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 2.2e-97 359.0 186 90.9
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 2.9e-97 358.6 186 89.8
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 8.4e-97 357.1 186 89.2
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 1.4e-96 356.3 186 90.3
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 1.9e-96 355.9 186 88.7
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 3.5e-95 351.7 186 87.6
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 3.5e-95 351.7 186 85.5
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 1.0e-94 350.1 186 88.2
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.3e-94 349.7 186 88.2
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 1.7e-94 349.4 186 86.6
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 3.0e-94 348.6 186 86.6
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 3.0e-94 348.6 186 86.6
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 3.9e-94 348.2 186 86.0
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.1e-94 347.8 186 85.5
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 5.1e-94 347.8 186 85.5
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 6.6e-94 347.4 183 87.4
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 8.7e-94 347.1 186 84.9
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 8.7e-94 347.1 186 87.6
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 1.1e-93 346.7 186 86.0
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 1.1e-93 346.7 186 87.1
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 1.1e-93 346.7 186 86.0
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 1.5e-93 346.3 186 86.0
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 1.9e-93 345.9 186 86.6
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 2.5e-93 345.5 186 87.1
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 2.5e-93 345.5 186 86.0
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.3e-93 345.1 186 86.6
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 4.3e-93 344.7 186 84.9
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 5.6e-93 344.4 185 84.9
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 7.3e-93 344.0 185 84.9
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.3e-92 343.2 183 85.2
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.6e-92 342.8 186 83.9
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.8e-92 342.0 186 84.4
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 3.6e-92 341.7 185 85.4
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 6.2e-92 340.9 185 84.9
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 6.2e-92 340.9 186 84.9
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 6.2e-92 340.9 183 85.2
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 8.1e-92 340.5 183 85.8
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 8.1e-92 340.5 185 84.9
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 85.5
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.1e-91 340.1 182 85.2
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 1.1e-91 340.1 186 83.3
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 1.8e-91 339.3 186 84.9
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 1.8e-91 339.3 186 83.3
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 2.4e-91 339.0 185 82.7
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.4e-91 339.0 186 84.4
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 2.4e-91 339.0 185 83.8
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 5.3e-91 337.8 186 83.9
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 83.3
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 9.0e-91 337.0 181 84.0
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 9.0e-91 337.0 183 84.7
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 9.0e-91 337.0 186 84.9
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.5e-90 336.3 182 84.1
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 1.5e-90 336.3 182 84.1
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 2.6e-90 335.5 182 84.6
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 2.6e-90 335.5 186 83.3
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 3.4e-90 335.1 186 83.3
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 4.5e-90 334.7 183 84.2
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 5.8e-90 334.3 181 82.9
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 7.6e-90 334.0 186 82.8
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 9.9e-90 333.6 185 81.6
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 9.9e-90 333.6 185 82.2
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 1.3e-89 333.2 183 86.3
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 1.3e-89 333.2 186 81.2
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 1.3e-89 333.2 172 91.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 1.7e-89 332.8 183 83.6
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 1.7e-89 332.8 186 82.3
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 3.8e-89 331.6 183 83.1
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 3.8e-89 331.6 183 83.6
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 3.8e-89 331.6 183 83.1
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 4.9e-89 331.3 183 82.5
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 6.4e-89 330.9 183 82.5
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 8.4e-89 330.5 178 86.0
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 8.4e-89 330.5 183 83.1
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.4e-89 330.5 183 83.1
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 8.4e-89 330.5 183 83.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 8.4e-89 330.5 183 82.5
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 82.5
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 82.5
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 82.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 82.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 82.0
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 1.1e-88 330.1 183 81.4
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.4e-88 329.7 185 82.2
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 1.4e-88 329.7 183 82.5
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 2.4e-88 328.9 183 81.4
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 3.2e-88 328.6 183 82.0
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 3.2e-88 328.6 183 82.0
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 3.2e-88 328.6 183 80.9
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 5.4e-88 327.8 183 80.9
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 5.4e-88 327.8 183 82.0
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 5.4e-88 327.8 186 81.2
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 7.1e-88 327.4 183 82.0
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 7.1e-88 327.4 183 82.5
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 80.9
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.2e-87 326.6 183 83.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 3.9e-86 321.6 183 84.7
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 3.9e-86 321.6 186 81.2
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 2.5e-85 318.9 186 75.3
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 5.6e-85 317.8 181 80.1
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 4.8e-84 314.7 186 78.0
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 1.1e-83 313.5 186 77.4
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 6.9e-83 310.8 187 78.1
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 4.5e-82 308.1 185 77.8
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 4.5e-82 308.1 187 77.5
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 3.8e-81 305.1 186 75.8
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 3.5e-79 298.5 186 73.7
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 6.0e-79 297.7 173 76.9
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 7.9e-79 297.4 186 73.7
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 1.8e-78 296.2 183 75.4
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 3.9e-78 295.0 186 75.3
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 1.1e-77 293.5 186 72.6
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 2.5e-77 292.4 186 72.0
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 3.3e-77 292.0 186 71.5
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 7.4e-77 290.8 186 71.5
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.3e-76 290.0 186 71.5
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 3.8e-73 278.5 186 67.7
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 3.9e-62 241.9 183 51.9
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 7.7e-58 227.6 187 54.5
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 1.3e-57 226.9 181 54.1
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.2e-57 226.1 172 64.0
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 4.2e-56 221.9 177 52.5
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 5.1e-54 214.9 183 50.3
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 8.8e-54 214.2 187 52.4
HPP92_022794 Vanilla planifolia HOM05D005867 ORTHO05D007273 3.0e-46 189.1 151 56.3
Os09g0486000 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 8.2e-44 181.0 180 50.6
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 5.7e-37 158.3 89 83.1
Zm00001eb316590 Zea mays HOM05D005867 ORTHO05D007273 9.1e-35 151.0 172 47.1
Zm00001eb189280 Zea mays HOM05D005867 ORTHO05D007273 4.1e-27 125.6 88 65.9
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.2e-23 114.0 157 33.8
Actinidia28459 Actinidia chinensis HOM05D005867 ORTHO05D055216 5.7e-21 105.1 54 87.0
Cfa022043 Carpinus fangiana HOM05D002321 ORTHO05D006940 4.3e-08 62.4 88 34.1


User provided reference genes

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