Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 2.0e-101 372.5 192 100.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 5.7e-64 248.1 132 96.2
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 2.2e-60 236.1 129 94.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 2.5e-59 232.6 129 91.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.4e-57 226.9 131 87.8
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.8e-54 216.5 132 86.4
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 5.3e-54 214.9 132 83.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 6.9e-54 214.5 130 83.8
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.5e-53 211.8 132 83.3
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.5e-53 211.8 135 82.2
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.9e-53 211.5 132 83.3
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.9e-53 211.5 132 83.3
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 5.9e-53 211.5 132 83.3
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.3e-52 210.3 132 84.1
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.9e-52 209.1 132 82.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 2.9e-52 209.1 132 83.3
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.8e-52 208.8 132 81.8
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.0e-52 208.4 132 81.1
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 8.5e-52 207.6 132 82.6
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 8.5e-52 207.6 132 81.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 8.5e-52 207.6 132 81.8
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 8.5e-52 207.6 131 82.4
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.1e-51 207.2 132 82.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.1e-51 207.2 130 82.3
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 1.1e-51 207.2 132 81.8
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.4e-51 206.8 132 82.6
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.9e-51 206.5 132 81.8
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.9e-51 206.5 132 81.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.9e-51 206.5 132 81.1
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.5e-51 206.1 132 81.1
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.5e-51 206.1 132 81.8
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 2.5e-51 206.1 132 81.8
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 3.2e-51 205.7 132 81.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 4.2e-51 205.3 132 81.1
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.2e-51 205.3 132 81.1
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 5.5e-51 204.9 132 81.1
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.5e-51 204.9 132 81.1
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 7.2e-51 204.5 132 80.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 9.4e-51 204.1 132 81.1
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 9.4e-51 204.1 132 81.1
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 9.4e-51 204.1 132 80.3
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 9.4e-51 204.1 132 80.3
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.2e-50 203.8 132 81.1
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 1.2e-50 203.8 132 80.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.2e-50 203.8 132 81.8
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.6e-50 203.4 132 80.3
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.6e-50 203.4 132 80.3
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.1e-50 203.0 132 79.5
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.1e-50 203.0 132 78.8
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 2.1e-50 203.0 132 79.5
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 2.1e-50 203.0 132 81.1
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 2.1e-50 203.0 132 81.1
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.7e-50 202.6 132 79.5
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.7e-50 202.6 132 79.5
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 2.7e-50 202.6 132 80.3
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 79.5
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 3.6e-50 202.2 132 80.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 6.1e-50 201.4 132 79.5
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 6.1e-50 201.4 132 80.3
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 6.1e-50 201.4 132 80.3
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 6.1e-50 201.4 132 78.8
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 7.9e-50 201.1 132 78.0
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 7.9e-50 201.1 132 78.8
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 7.9e-50 201.1 132 78.8
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 7.9e-50 201.1 132 77.3
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 7.9e-50 201.1 132 78.8
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 7.9e-50 201.1 132 79.5
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 1.0e-49 200.7 132 78.8
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 1.4e-49 200.3 132 78.8
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.3e-49 199.5 132 76.5
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.0e-49 199.1 129 79.8
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 3.0e-49 199.1 129 79.8
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 3.0e-49 199.1 129 79.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.0e-49 199.1 132 77.3
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 3.9e-49 198.7 130 79.2
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 3.9e-49 198.7 132 78.8
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.1e-48 197.2 129 79.1
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.6e-48 196.1 132 78.0
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.6e-48 196.1 132 77.3
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.6e-48 196.1 132 76.5
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 9.7e-48 194.1 132 75.8
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 9.7e-48 194.1 129 79.1
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-46 190.3 128 77.3
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-46 189.9 132 76.5
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.8e-46 189.9 132 76.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 3.1e-46 189.1 117 84.6
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 7.0e-46 188.0 117 84.6
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.5e-45 186.8 173 64.2
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-45 186.4 177 61.6
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 2.6e-45 186.0 116 84.5
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 2.6e-45 186.0 176 60.2
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 5.9e-45 184.9 154 66.2
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 1.3e-44 183.7 111 85.6
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-44 182.6 129 73.6
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-44 182.6 129 73.6
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 3.8e-44 182.2 137 73.7
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 6.5e-44 181.4 132 72.7
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 1.4e-43 180.3 116 81.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.4e-43 180.3 94 98.9
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 1.4e-43 180.3 173 59.5
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-43 179.9 173 61.8
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 3.2e-43 179.1 97 93.8
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.2e-43 178.7 116 80.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.2e-43 178.7 116 80.2
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 8.0e-42 174.5 126 74.6
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.8e-41 173.3 132 69.7
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.3e-41 172.9 113 78.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.3e-41 172.9 116 77.6
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 3.0e-41 172.6 124 75.0
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.7e-41 171.4 128 72.7
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 2.6e-40 169.5 110 80.0
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.6e-40 169.5 132 66.7
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 7.4e-40 167.9 130 69.2
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.1e-38 162.5 126 66.7
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 4.1e-38 162.2 132 62.1
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.2e-37 160.6 146 63.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 5.9e-37 158.3 132 61.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 8.5e-36 154.5 81 95.1
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 2.1e-34 149.8 144 61.8
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.1e-30 137.5 74 93.2
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.1e-30 137.5 74 93.2
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.6e-29 133.7 80 83.8
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-26 123.6 112 62.5
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 6.1e-26 121.7 123 58.5
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.2e-24 117.5 129 56.6
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.0e-24 116.7 145 46.2
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.4e-22 110.5 77 75.3
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 1.2e-21 107.5 77 71.4
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 2.3e-20 103.2 77 67.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 4.0e-17 92.4 57 78.9
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.0e-14 81.6 70 65.7
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.9e-12 76.3 46 82.6
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 6.6e-12 75.1 151 36.4
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 8.6e-12 74.7 150 36.7
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 1.1e-11 74.3 151 33.1
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.9e-11 73.6 58 67.2
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 3.3e-11 72.8 43 81.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 4.3e-11 72.4 149 33.6
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 7.3e-11 71.6 142 31.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.2e-10 70.9 149 30.2
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.0e-10 68.2 126 35.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.5e-08 61.6 141 30.5
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.7e-07 60.5 143 29.4
Ca_06100_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.9e-07 59.7 43 74.4
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.3e-07 58.2 157 28.7
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 2.4e-06 56.6 120 32.5
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 2.4e-06 56.6 120 32.5
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.2e-06 56.2 120 31.7
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.2e-06 56.2 120 31.7
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 3.2e-06 56.2 38 71.1
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.4e-06 55.5 154 30.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 5.4e-06 55.5 114 33.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.4e-06 55.5 114 33.3
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 5.4e-06 55.5 114 33.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 5.4e-06 55.5 120 31.7
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 7.0e-06 55.1 120 31.7
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 7.0e-06 55.1 97 36.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 7.0e-06 55.1 120 31.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 7.0e-06 55.1 114 32.5


User provided reference genes

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