Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 9.4e-259 896.3 456 100.0
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 9.6e-86 321.6 328 55.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 9.0e-84 315.1 329 55.3
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.4e-83 312.8 313 57.2
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 4.2e-81 306.2 311 55.0
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.3e-79 301.2 364 48.6
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.9e-79 299.7 311 53.7
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 5.1e-79 299.3 311 53.1
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 8.7e-79 298.5 313 55.3
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-78 298.1 311 53.7
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 1.3e-77 294.7 307 52.4
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.6e-75 287.0 312 51.0
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 9.9e-75 285.0 289 54.7
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 2.4e-73 280.4 317 51.1
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 9.3e-73 278.5 310 48.7
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.2e-72 278.1 314 48.4
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 4.6e-72 276.2 313 52.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.8e-71 274.2 309 49.5
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.9e-71 273.1 319 47.3
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 6.7e-71 272.3 311 51.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 9.6e-70 268.5 318 50.6
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.8e-69 266.2 315 47.0
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 5.8e-67 259.2 281 56.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 7.6e-67 258.8 315 50.8
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.8e-66 256.5 302 48.7
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.8e-66 256.5 306 50.7
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 8.4e-66 255.4 311 48.6
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 1.1e-65 255.0 319 46.4
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.4e-65 254.6 352 44.9
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.2e-65 253.1 311 47.3
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 9.3e-65 251.9 301 48.5
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 2.1e-64 250.8 302 48.3
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 6.0e-64 249.2 302 47.7
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.8e-63 247.7 302 47.4
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 3.0e-63 246.9 299 46.2
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 3.9e-63 246.5 302 47.0
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 6.7e-63 245.7 313 49.2
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 6.7e-63 245.7 305 48.2
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.9e-62 244.2 303 48.5
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 7.4e-62 242.3 309 47.9
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 9.6e-62 241.9 303 48.8
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 1.3e-61 241.5 310 45.8
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.3e-61 241.5 309 44.3
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.1e-61 240.7 303 47.9
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 6.2e-61 239.2 321 43.6
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 8.2e-61 238.8 304 44.4
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 8.2e-61 238.8 304 44.4
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 8.2e-61 238.8 305 43.6
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.1e-60 238.4 301 44.9
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 6.9e-60 235.7 304 46.4
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 9.0e-60 235.3 312 47.1
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 7.6e-59 232.3 309 47.2
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.0e-58 231.9 315 45.7
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 1.0e-58 231.9 335 42.4
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.0e-58 231.9 306 46.7
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 4.9e-58 229.6 316 45.3
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 4.9e-58 229.6 316 45.3
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 8.4e-58 228.8 302 43.4
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.1e-57 228.4 312 44.2
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 1.1e-57 228.4 302 44.7
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.1e-57 228.4 301 47.5
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 2.5e-57 227.3 301 44.5
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 2.5e-57 227.3 302 43.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 3.2e-57 226.9 313 43.1
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 5.5e-57 226.1 304 43.8
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 9.3e-57 225.3 302 44.0
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 1.2e-56 224.9 306 45.4
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.1e-56 224.2 331 43.8
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 3.5e-56 223.4 305 45.9
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 7.9e-56 222.2 305 44.9
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.0e-55 221.9 301 43.9
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 1.3e-55 221.5 342 40.4
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.8e-55 221.1 334 42.8
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.1e-55 219.5 320 44.7
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 8.7e-55 218.8 331 42.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 8.7e-55 218.8 313 43.5
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 2.5e-54 217.2 378 40.2
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 9.7e-54 215.3 300 44.3
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 9.7e-54 215.3 277 45.8
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.3e-53 214.9 309 42.1
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 4.8e-53 213.0 291 43.3
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.9e-52 209.1 315 42.9
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.9e-51 206.1 307 40.4
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 3.8e-50 203.4 341 40.2
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 1.4e-49 201.4 326 39.3
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.9e-49 201.1 311 40.2
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 3.2e-49 200.3 304 40.1
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 3.2e-49 200.3 303 41.6
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 7.2e-49 199.1 299 42.1
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 9.4e-49 198.7 299 41.5
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 9.4e-49 198.7 299 41.5
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 7.9e-48 195.7 365 37.3
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.8e-47 194.5 304 40.8
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 3.0e-47 193.7 307 43.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.9e-47 193.4 221 48.0
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 8.8e-47 192.2 292 40.8
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.1e-46 191.8 312 38.8
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 2.5e-46 190.7 299 41.1
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 3.3e-46 190.3 301 38.5
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 7.4e-46 189.1 335 40.6
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.3e-45 188.3 316 39.6
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 3.7e-45 186.8 322 39.1
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.1e-44 185.3 305 41.3
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 9.1e-44 182.2 409 34.0
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 1.4e-41 174.9 313 40.6
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.5e-41 172.9 220 45.0
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.1e-40 171.0 305 38.4
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 2.7e-40 170.6 307 39.4
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 4.7e-40 169.9 293 38.2
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 6.1e-40 169.5 321 35.8
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 3.9e-39 166.8 220 44.5
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 2.0e-38 164.5 301 37.5
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 3.3e-38 163.7 300 34.7
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.5e-35 154.8 217 42.4
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 9.4e-33 145.6 225 40.4
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 6.3e-29 132.9 308 33.8
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 2.0e-27 127.9 217 38.2
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 1.0e-26 125.6 124 50.8
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-25 122.1 225 36.4
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 1.5e-25 121.7 243 35.4
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 2.1e-24 117.9 258 31.4
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.1e-24 117.9 371 27.8
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 1.8e-23 114.8 94 61.7
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 3.7e-21 107.1 95 52.6
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 4.8e-21 106.7 296 27.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.8e-21 106.7 204 37.7
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 1.4e-20 105.1 93 51.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 1.4e-20 105.1 357 27.2
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 3.5e-19 100.5 239 32.2
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 2.9e-18 97.4 219 32.4
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 1.5e-17 95.1 108 44.4
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.5e-17 95.1 323 27.6
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.2e-17 94.0 119 47.9
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 3.2e-17 94.0 70 65.7
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 5.2e-15 86.7 119 39.5
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.6e-14 84.3 266 30.8
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.2e-13 81.3 55 65.5
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 6.3e-13 79.7 101 41.6
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.1e-12 79.0 87 47.1
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 7.7e-11 72.8 324 24.4
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 2.8e-08 64.3 75 46.7
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 6.1e-08 63.2 81 44.4
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.3e-07 61.2 181 32.0
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 4.0e-07 60.5 93 34.4
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 9.8e-06 55.8 166 32.5


User provided reference genes

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