Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.5e-103 377.5 203 100.0
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 2.3e-68 262.7 195 72.8
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 6.8e-68 261.2 195 73.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 4.4e-67 258.5 189 73.5
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 8.4e-66 254.2 189 73.5
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.4e-65 252.7 183 74.9
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 7.1e-65 251.1 188 71.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.5e-64 248.8 205 67.3
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 3.5e-64 248.8 188 70.2
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 3.5e-64 248.8 195 68.7
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 4.6e-64 248.4 189 72.0
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.6e-64 248.4 195 69.2
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 4.6e-64 248.4 202 66.3
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 1.7e-63 246.5 195 70.8
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 3.0e-63 245.7 195 68.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 1.1e-62 243.8 188 70.2
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.5e-62 242.7 195 69.2
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 3.3e-62 242.3 189 69.3
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.6e-61 240.0 203 67.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.8e-61 239.2 185 68.1
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 4.7e-61 238.4 187 69.5
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 6.2e-61 238.0 189 68.3
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 6.2e-61 238.0 187 70.1
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-60 237.3 189 68.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.1e-60 237.3 194 68.6
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.2e-60 235.0 207 64.3
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 5.2e-60 235.0 207 64.3
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.2e-60 235.0 207 64.3
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 2.0e-59 233.0 203 64.0
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 3.4e-59 232.3 202 63.9
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 7.6e-59 231.1 194 67.5
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.4e-58 228.0 202 63.4
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 6.4e-58 228.0 202 63.4
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 8.4e-58 227.6 213 62.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.1e-57 227.3 202 63.9
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-57 226.9 194 64.9
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.4e-57 226.9 204 63.2
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.9e-57 226.5 202 61.9
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.4e-57 226.1 202 64.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 3.2e-57 225.7 185 68.1
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-57 225.7 185 68.1
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 9.3e-57 224.2 193 64.2
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.6e-56 223.4 192 64.1
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-56 223.0 205 63.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.1e-56 223.0 204 63.2
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 3.5e-56 222.2 199 62.3
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.6e-56 221.9 201 62.2
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 6.0e-56 221.5 202 62.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 6.0e-56 221.5 203 62.6
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 6.0e-56 221.5 200 63.0
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 7.8e-56 221.1 206 60.7
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 7.8e-56 221.1 189 65.6
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.0e-55 220.7 185 66.5
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.3e-55 220.3 202 62.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 1.3e-55 220.3 185 66.5
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 3.0e-55 219.2 202 61.9
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.0e-55 219.2 198 62.1
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 3.9e-55 218.8 195 61.0
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 3.9e-55 218.8 221 58.8
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 8.7e-55 217.6 215 61.9
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 8.7e-55 217.6 189 61.9
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 8.7e-55 217.6 193 60.6
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 8.7e-55 217.6 202 58.9
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.5e-54 216.1 202 59.4
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.5e-54 216.1 197 60.9
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 3.3e-54 215.7 199 62.3
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 7.3e-54 214.5 201 62.2
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 9.6e-54 214.2 182 63.2
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 9.6e-54 214.2 182 64.3
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-53 213.8 202 59.9
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.6e-53 213.4 202 58.9
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.1e-53 213.0 198 59.1
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 2.8e-53 212.6 204 59.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.6e-53 212.2 199 61.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 4.8e-53 211.8 183 63.9
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 4.8e-53 211.8 202 59.4
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 4.8e-53 211.8 183 63.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 4.8e-53 211.8 201 60.7
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 6.2e-53 211.5 202 57.9
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 8.1e-53 211.1 202 59.9
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 1.1e-52 210.7 182 63.7
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.4e-52 210.3 197 59.9
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.8e-52 209.9 183 61.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-52 209.9 204 60.3
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.8e-52 209.9 182 63.2
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 3.1e-52 209.1 194 60.3
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.0e-52 208.8 202 57.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 1.5e-51 206.8 198 59.1
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.5e-51 206.8 203 61.6
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 2.0e-51 206.5 222 56.8
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.6e-51 206.1 198 60.6
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 5.8e-51 204.9 182 62.1
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.8e-50 202.2 202 56.9
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 3.8e-50 202.2 202 57.4
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 3.2e-49 199.1 202 56.9
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 5.4e-49 198.4 164 65.9
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 1.6e-48 196.8 195 56.4
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 2.7e-48 196.1 194 55.2
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-45 186.8 202 52.5
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 8.1e-45 184.5 194 55.2
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 4.0e-44 182.2 189 53.4
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.5e-43 180.3 195 51.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 5.8e-43 178.3 185 54.1
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.3e-42 177.2 204 53.4
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 6.0e-40 168.3 171 53.8
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 7.9e-40 167.9 194 50.0
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 3.0e-39 166.0 211 47.9
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.9e-38 163.3 194 49.0
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 5.6e-38 161.8 194 49.0
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.6e-38 161.8 198 49.5
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.6e-37 160.2 201 47.3
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-37 160.2 112 73.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 8.1e-37 157.9 195 47.7
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.6e-32 142.1 183 48.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 3.9e-31 139.0 185 45.4
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.6e-24 117.1 125 53.6
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 7.9e-24 114.8 70 80.0
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.8e-23 113.6 83 72.3
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.4e-19 99.4 70 67.1
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.7e-18 97.1 59 81.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-17 93.6 119 47.9
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 3.3e-14 82.8 56 73.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.7e-13 80.5 79 57.0
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.7e-13 80.5 79 57.0
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.3e-10 70.9 45 75.6
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 4.2e-09 65.9 40 82.5
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 5.5e-09 65.5 90 46.7
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-08 63.5 45 66.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 4.7e-08 62.4 119 40.3
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 6.1e-08 62.0 41 70.7


User provided reference genes

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