Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 3.8e-227 791.2 407 100.0
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.2e-157 558.5 431 67.7
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 3.6e-153 545.4 430 66.7
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 1.8e-152 543.1 429 66.2
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 5.2e-152 541.6 430 67.0
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 1.2e-151 540.4 422 65.9
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 2.6e-151 539.3 430 66.7
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 6.4e-150 534.6 431 65.7
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.9e-149 533.1 431 65.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.4e-149 532.7 430 66.3
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 7.1e-149 531.2 431 64.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.2e-148 530.4 429 65.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 4.6e-148 528.5 431 63.8
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.3e-147 526.2 431 64.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.0e-147 525.8 427 64.9
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 5.1e-147 525.0 431 63.3
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.6e-146 521.5 431 63.6
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 7.3e-146 521.2 435 62.5
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.3e-145 520.4 431 64.0
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 2.1e-145 519.6 428 64.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.1e-145 519.6 431 63.6
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.1e-145 519.6 431 64.0
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 6.2e-145 518.1 434 63.8
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.4e-144 516.9 433 61.9
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.1e-144 515.8 427 63.2
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 5.8e-143 511.5 437 60.2
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.9e-143 510.8 432 62.0
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.3e-142 510.4 433 62.6
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.2e-142 509.6 435 59.8
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 2.9e-142 509.2 427 60.9
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.2e-141 505.8 434 62.7
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 7.1e-141 504.6 436 61.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.2e-140 503.8 427 60.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.6e-140 501.9 421 63.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 7.9e-140 501.1 435 58.6
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.0e-139 500.7 437 60.2
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 2.3e-139 499.6 435 60.0
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.9e-139 498.8 421 63.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 6.7e-139 498.0 437 58.1
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 8.7e-139 497.7 437 58.8
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.5e-138 496.9 428 60.7
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.5e-138 496.1 437 60.0
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 3.3e-138 495.7 437 58.1
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 7.4e-138 494.6 437 58.8
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 9.6e-138 494.2 430 61.6
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 1.6e-137 493.4 432 60.0
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-136 490.0 435 57.7
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 4.0e-136 488.8 434 58.3
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-135 487.3 431 58.2
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 1.3e-134 483.8 436 57.8
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.8e-134 482.3 431 60.6
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 8.4e-134 481.1 435 57.0
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 3.2e-133 479.2 466 53.6
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.2e-133 479.2 396 63.9
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.2e-132 477.2 428 59.1
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.6e-132 476.9 436 58.7
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.6e-132 476.9 431 58.0
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.3e-131 473.8 435 57.2
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 3.0e-131 472.6 436 58.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 6.7e-131 471.5 429 56.2
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 8.7e-131 471.1 431 56.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 2.5e-130 469.5 434 57.4
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 4.3e-130 468.8 434 57.1
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.6e-130 468.4 434 58.1
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.3e-129 467.2 393 61.6
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.6e-129 466.8 435 57.0
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 2.1e-129 466.5 434 57.1
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 8.2e-129 464.5 434 54.8
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.1e-128 464.2 434 57.1
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.1e-128 464.2 434 57.1
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 5.3e-128 461.8 422 58.3
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.5e-127 460.3 425 56.5
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.4e-127 459.1 433 55.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 4.5e-127 458.8 435 57.7
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 5.8e-127 458.4 434 55.3
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 1.0e-126 457.6 437 54.7
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 1.3e-126 457.2 434 55.8
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-126 456.4 437 54.7
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.9e-126 456.1 434 56.2
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.5e-126 454.9 420 60.0
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 8.4e-126 454.5 427 55.5
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 1.1e-125 454.1 436 54.4
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 1.1e-125 454.1 435 57.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.5e-125 453.0 430 57.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 5.5e-125 451.8 405 57.8
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 1.6e-124 450.3 435 54.9
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 4.6e-124 448.7 424 56.8
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 6.0e-124 448.4 434 55.8
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.9e-123 445.7 424 56.8
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.1e-123 445.3 427 54.8
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 6.7e-123 444.9 438 55.3
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.3e-122 442.6 432 54.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 3.7e-121 439.1 437 54.7
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 8.2e-121 438.0 420 56.9
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 1.4e-120 437.2 430 54.0
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 1.3e-113 414.1 476 48.7
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.2e-113 413.3 427 51.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.8e-113 412.9 429 50.3
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 8.2e-113 411.4 433 53.1
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 2.4e-112 409.8 346 61.6
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 3.1e-112 409.5 417 52.0
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-111 406.4 406 54.2
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.4e-109 400.6 433 49.7
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 2.5e-109 399.8 437 51.7
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.8e-107 393.7 379 57.3
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 4.8e-105 385.6 372 54.8
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.6e-95 354.0 421 48.5
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.7e-94 350.5 431 45.2
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 2.9e-94 349.7 433 44.6
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.8e-89 332.4 354 51.4
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 8.5e-86 321.6 326 54.0
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 4.2e-85 319.3 428 43.0
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 2.4e-80 303.5 323 53.3
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 1.5e-74 284.3 365 48.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 7.0e-72 275.4 371 42.6
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 4.5e-71 272.7 429 38.5
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.0e-70 271.6 430 37.2
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.7e-70 270.8 434 37.8
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 1.5e-66 257.7 413 40.2
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.7e-65 254.2 245 58.0
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.9e-61 240.7 251 53.8
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-59 235.0 364 42.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 9.8e-58 228.4 283 47.0
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.7e-57 227.6 434 32.9
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 6.2e-52 209.1 354 40.4
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 6.8e-51 205.7 171 60.8
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 3.9e-46 189.9 219 47.5
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 1.8e-43 181.0 274 43.1
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.8e-43 181.0 285 41.8
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 1.2e-39 168.3 296 37.8
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 3.9e-38 163.3 175 50.9
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.9e-29 134.4 97 68.0
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.6e-28 131.3 108 61.1
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 2.8e-28 130.6 242 38.0
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 2.3e-22 110.9 206 35.0
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-21 107.8 110 58.2
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.5e-21 107.5 102 59.8
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.8e-20 104.0 158 44.9
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.2e-20 102.8 102 59.8
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 5.3e-19 99.8 108 57.4
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 7.6e-18 95.9 88 60.2
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 2.9e-17 94.0 79 63.3
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 8.4e-17 92.4 87 56.3
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.6e-15 88.2 71 64.8
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.7e-14 82.4 65 58.5
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-13 81.3 66 68.2
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.3e-13 80.5 68 64.7
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-12 78.2 70 54.3
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 3.4e-10 70.5 70 51.4
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 1.3e-09 68.6 185 28.6
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-08 65.1 70 45.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 2.5e-08 64.3 73 46.6
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 3.2e-08 63.9 65 53.8
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 3.2e-08 63.9 65 53.8
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 4.2e-08 63.5 67 52.2
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.6e-07 61.6 45 57.8
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 4.6e-07 60.1 55 54.5
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 4.6e-07 60.1 51 56.9
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 6.7e-06 56.2 51 62.7


User provided reference genes

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