Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 4.7e-123 444.5 219 100.0
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 1.7e-93 346.3 228 76.3
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 1.1e-92 343.6 230 75.2
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.1e-91 339.3 228 75.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 6.8e-90 334.3 227 74.0
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 8.9e-90 334.0 228 75.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.2e-89 333.6 231 74.9
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 2.6e-89 332.4 223 76.2
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 5.8e-89 331.3 226 75.7
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 9.9e-89 330.5 228 75.9
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.7e-88 329.7 231 74.9
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-88 329.3 228 71.9
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.2e-88 329.3 228 72.8
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.2e-88 329.3 228 72.8
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.1e-87 327.0 231 72.7
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.4e-87 325.9 228 73.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-87 325.9 223 73.1
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.4e-87 325.9 227 72.2
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 5.4e-87 324.7 223 72.6
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 5.4e-87 324.7 229 74.2
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.2e-86 323.6 228 72.4
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.1e-86 322.8 228 73.7
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.1e-86 322.8 223 72.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.0e-85 320.5 227 71.4
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.0e-85 320.5 224 71.0
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.3e-85 319.3 229 72.1
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 3.0e-85 318.9 228 71.9
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.0e-85 318.9 228 71.9
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 8.7e-85 317.4 225 72.4
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.9e-84 316.2 224 71.0
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.9e-84 316.2 223 71.3
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 7.3e-84 314.3 228 71.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.3e-83 313.5 223 70.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-83 313.5 223 70.4
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.3e-83 313.5 224 69.2
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.6e-83 313.2 224 70.5
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.8e-83 311.6 223 70.0
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.2e-83 311.2 223 70.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.4e-82 310.1 223 69.5
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.4e-82 309.3 223 69.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.9e-82 307.8 221 70.6
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 2.0e-81 306.2 224 67.9
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 3.4e-81 305.4 228 70.2
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 7.6e-81 304.3 228 70.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.9e-81 303.9 228 68.9
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.3e-80 303.5 214 70.6
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.7e-80 303.1 221 70.6
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 1.7e-80 303.1 225 68.0
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.9e-79 299.7 228 67.5
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 4.2e-79 298.5 225 69.8
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.6e-78 296.6 235 66.4
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.1e-78 296.2 225 68.0
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.0e-78 294.7 223 67.3
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 3.9e-77 292.0 236 66.5
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.4e-76 287.7 227 69.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.6e-75 286.6 216 68.5
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.6e-75 285.4 216 69.0
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 6.2e-75 284.6 223 65.9
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.1e-74 283.9 222 65.3
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-74 282.0 226 66.4
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 5.3e-74 281.6 226 66.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.0e-74 280.8 226 66.4
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.5e-73 280.0 216 68.1
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 2.6e-73 279.3 220 65.0
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.5e-73 278.5 224 64.3
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 4.5e-73 278.5 222 63.1
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 5.8e-73 278.1 226 62.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 5.8e-73 278.1 220 65.9
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 9.9e-73 277.3 220 65.0
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.3e-72 276.9 222 66.2
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.9e-72 275.8 234 63.2
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.8e-72 275.4 226 65.0
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 6.4e-72 274.6 220 64.1
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.4e-71 273.5 224 61.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.4e-71 273.5 229 62.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.9e-71 273.1 222 63.1
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.2e-70 270.4 230 64.3
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.1e-70 269.6 216 67.1
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 2.7e-70 269.2 221 61.5
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 3.5e-70 268.9 219 62.1
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 7.9e-70 267.7 216 63.9
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 7.9e-70 267.7 229 62.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.9e-68 263.1 222 59.9
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 4.3e-68 261.9 221 62.9
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 4.3e-68 261.9 221 62.9
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 4.3e-68 261.9 216 62.0
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 2.1e-67 259.6 232 60.8
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 8.1e-67 257.7 211 64.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.1e-66 257.3 228 61.0
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-66 255.8 226 60.2
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.0e-66 255.4 228 60.1
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 6.9e-66 254.6 219 62.1
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.5e-65 253.4 216 58.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.5e-65 253.4 215 59.5
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.0e-65 253.1 216 58.8
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.6e-65 252.7 224 62.1
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-65 251.9 225 58.2
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 5.8e-65 251.5 225 58.2
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 5.8e-65 251.5 225 57.8
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 5.8e-65 251.5 225 58.2
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.8e-65 251.5 161 75.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.0e-64 250.8 224 59.4
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.3e-64 250.4 218 58.3
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.7e-64 250.0 218 58.3
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.7e-64 250.0 148 77.0
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 3.8e-64 248.8 218 60.6
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.9e-63 246.5 223 60.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.9e-63 246.5 225 60.9
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.5e-63 246.1 217 59.4
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.2e-63 245.7 216 57.9
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.2e-63 245.4 223 60.5
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.1e-63 244.6 245 55.1
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.6e-62 243.4 210 59.0
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 2.1e-62 243.0 251 56.2
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.7e-62 242.7 217 57.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 4.6e-62 241.9 239 54.4
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 6.0e-62 241.5 213 61.5
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.0e-61 240.7 226 57.5
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.3e-61 240.4 231 54.5
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.8e-61 240.0 225 57.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 2.3e-61 239.6 225 57.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 3.9e-61 238.8 225 57.3
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.7e-61 238.0 229 57.6
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 1.6e-59 233.4 200 61.0
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.6e-59 233.4 220 55.9
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 2.8e-59 232.6 146 75.3
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 6.3e-59 231.5 236 54.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.8e-58 229.9 183 64.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.8e-58 229.9 228 57.0
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.4e-58 229.6 219 57.1
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.4e-58 229.6 224 56.2
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.1e-58 229.2 190 64.2
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 6.9e-58 228.0 236 53.4
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 9.0e-58 227.6 247 52.2
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.2e-56 223.0 167 65.9
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 2.1e-54 216.5 213 53.1
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 3.6e-54 215.7 221 51.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 6.1e-54 214.9 204 56.9
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.8e-53 213.4 184 58.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.8e-53 213.4 199 56.8
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.7e-53 211.5 201 56.2
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.7e-52 208.4 222 53.2
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 5.7e-52 208.4 234 50.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.3e-51 207.2 142 66.9
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 6.3e-51 204.9 236 49.2
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.8e-50 203.4 146 64.4
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.5e-49 200.3 223 52.0
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.6e-49 199.5 140 65.7
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 7.7e-49 198.0 218 48.2
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.0e-48 197.6 218 48.2
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 5.0e-48 195.3 212 48.6
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 8.5e-48 194.5 220 47.7
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.5e-47 191.8 225 48.0
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.6e-46 190.3 219 47.0
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.6e-46 188.7 220 46.8
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.3e-45 186.4 227 48.0
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 3.0e-45 186.0 220 45.0
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 8.8e-45 184.5 223 49.3
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 5.7e-44 181.8 222 44.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 9.7e-44 181.0 274 43.4
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.3e-43 178.3 227 45.8
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.1e-42 177.6 143 60.1
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.8e-42 176.8 123 67.5
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.5e-41 173.7 168 52.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.8e-40 169.1 153 55.6
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 6.5e-40 168.3 159 58.5
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 5.5e-39 165.2 209 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 7.2e-39 164.9 227 43.2
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.8e-37 160.2 198 46.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.1e-36 157.5 82 87.8
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 2.0e-36 156.8 223 44.8
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 2.0e-36 156.8 223 44.8
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.0e-36 156.8 104 65.4
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 7.7e-33 144.8 225 41.8
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.0e-29 132.5 85 71.8
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.5e-23 113.2 111 58.6
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.2e-23 112.5 63 79.4
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.3e-19 98.6 54 79.6
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 5.9e-17 92.0 52 78.8
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-06 57.0 130 35.4


User provided reference genes

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