Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 0.0e+00 1421.8 678 100.0
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 9.6e-284 979.9 816 59.4
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.0e-280 969.9 816 58.5
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 1.9e-279 965.7 819 58.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 3.5e-278 961.4 816 58.3
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 6.0e-278 960.7 815 59.0
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 1.8e-277 959.1 816 59.2
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 3.0e-277 958.4 815 58.7
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.1e-276 956.4 816 58.5
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 4.8e-275 951.0 816 58.5
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 4.5e-273 944.5 816 58.6
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 2.9e-272 941.8 816 57.7
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 4.2e-271 937.9 816 57.6
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 5.5e-271 937.6 816 57.5
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.2e-270 936.4 810 57.3
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.6e-270 936.0 816 57.6
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 6.1e-270 934.1 819 58.0
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 6.1e-270 934.1 816 57.8
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 2.2e-267 925.6 838 56.1
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.1e-266 921.8 816 56.1
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.3e-264 916.4 811 56.6
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.9e-264 915.2 811 56.6
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 5.0e-264 914.4 817 55.2
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 2.2e-256 889.0 815 54.5
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 1.1e-255 886.7 783 57.1
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 5.1e-253 877.9 860 52.1
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 3.7e-251 871.7 801 55.7
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 8.2e-251 870.5 815 55.0
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 7.7e-249 864.0 825 53.9
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 1.3e-248 863.2 816 53.1
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 8.5e-248 860.5 816 53.7
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 7.2e-247 857.4 819 53.7
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.4e-245 853.2 816 52.5
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 3.0e-245 852.0 816 52.5
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 6.7e-245 850.9 816 52.2
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.6e-244 849.0 825 52.7
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 2.6e-244 849.0 816 52.0
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 6.3e-243 844.3 789 53.9
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 5.0e-240 834.7 816 52.8
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 1.1e-239 833.6 782 54.5
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 3.6e-238 828.6 814 51.7
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 6.1e-238 827.8 816 52.7
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 2.9e-232 808.9 752 54.7
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 6.5e-232 807.7 820 51.7
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 9.4e-231 803.9 817 51.3
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 2.7e-230 802.4 712 56.7
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.7e-230 802.4 817 50.8
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 6.1e-230 801.2 818 51.2
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 1.5e-228 796.6 816 50.2
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 9.8e-228 793.9 816 50.1
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 5.4e-226 788.1 793 50.7
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 2.3e-224 782.7 813 49.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 5.0e-224 781.6 791 50.3
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 4.7e-222 775.0 816 47.5
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 1.4e-221 773.5 821 49.3
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.8e-221 773.1 745 52.9
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 3.0e-221 772.3 823 50.2
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 8.9e-221 770.8 818 49.5
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 4.4e-220 768.5 819 49.2
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 4.4e-220 768.5 819 49.2
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 5.7e-220 768.1 782 50.8
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 3.2e-218 762.3 824 49.4
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 1.2e-217 760.4 814 48.8
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 2.5e-215 752.7 816 47.5
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 8.0e-214 747.7 815 47.1
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 2.3e-213 746.1 821 49.0
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 5.2e-213 745.0 816 48.0
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 6.8e-213 744.6 816 48.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.6e-212 742.7 789 49.4
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 4.9e-211 738.4 816 47.8
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 3.5e-209 732.3 815 47.2
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 1.3e-208 730.3 816 45.8
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 3.0e-208 729.2 794 48.1
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 5.6e-207 724.9 791 49.1
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 1.3e-203 713.8 721 51.9
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 9.2e-202 707.6 816 45.7
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.1e-197 694.1 743 48.7
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 3.1e-197 692.6 823 46.2
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 4.0e-197 692.2 827 44.5
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 3.7e-195 685.6 634 54.7
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.1e-194 684.1 597 58.3
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 1.6e-190 670.2 829 43.5
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 8.4e-187 657.9 826 43.8
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 1.6e-185 653.7 825 45.0
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 3.6e-182 642.5 813 42.4
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.4e-181 639.8 622 53.1
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.1e-170 604.4 840 39.4
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 3.0e-168 596.3 807 41.4
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.1e-151 541.2 467 57.8
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 2.1e-145 520.4 773 41.4
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 6.1e-145 518.8 601 46.4
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.3e-136 490.3 341 67.7
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 3.3e-127 459.9 412 53.4
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.1e-125 454.9 850 32.9
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 5.0e-123 446.0 489 47.6
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 8.5e-115 418.7 274 72.6
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.7e-108 397.1 581 38.7
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.8e-104 384.4 437 46.5
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 1.7e-86 324.7 500 39.0
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 5.4e-85 319.7 326 53.4
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 3.1e-72 277.3 943 25.7
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.4e-64 251.9 220 52.7
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 4.9e-62 243.4 168 69.6
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 1.4e-48 198.7 180 47.8
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 1.7e-46 191.8 125 73.6
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.8e-46 190.7 162 56.8
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.2e-41 174.9 158 51.9
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.5e-39 168.7 154 57.8
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 8.5e-38 162.9 105 75.2
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 6.7e-35 153.3 134 55.2
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 3.4e-31 141.0 147 49.7
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 7.7e-31 139.8 147 49.7
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 2.5e-29 134.8 86 65.1
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.0e-26 125.2 154 44.2
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.7e-25 122.1 209 35.9
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 7.2e-21 106.7 95 54.7
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 8.2e-17 93.2 91 50.5
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 2.7e-12 78.2 57 63.2
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.7e-12 78.2 74 51.4
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 1.0e-11 76.3 76 53.9
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 7.5e-10 70.1 53 60.4


User provided reference genes

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