Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 5.1e-112 407.9 228 100.0
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 3.5e-44 182.6 242 49.2
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 1.5e-42 177.2 246 51.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 2.0e-39 166.8 247 45.3
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 4.4e-39 165.6 242 50.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.7e-38 163.7 274 50.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 2.8e-38 162.9 250 43.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 5.4e-37 158.7 249 50.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 5.4e-37 158.7 249 49.8
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.7e-36 156.4 241 42.3
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.7e-35 153.7 247 46.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.3e-35 153.3 243 42.4
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.9e-35 152.9 252 45.2
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 6.6e-35 151.8 243 42.4
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 1.5e-34 150.6 243 41.2
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.9e-34 150.2 249 46.2
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 2.5e-34 149.8 243 46.1
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.1e-33 146.7 232 46.1
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.0e-32 144.4 244 44.7
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.4e-32 144.1 255 47.1
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 3.0e-32 142.9 256 44.1
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 5.2e-32 142.1 244 42.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 8.9e-32 141.4 259 44.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 2.2e-30 136.7 240 40.0
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 2.2e-30 136.7 264 43.9
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 3.7e-30 136.0 249 44.6
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 1.1e-29 134.4 249 45.0
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.8e-29 133.7 247 42.9
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.2e-28 131.0 246 42.3
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 7.8e-28 128.3 243 42.8
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.0e-27 127.9 306 37.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.0e-27 127.9 259 40.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.0e-27 127.9 246 42.7
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.6e-27 125.2 246 42.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 6.6e-27 125.2 231 45.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.5e-26 124.0 249 43.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 3.3e-26 122.9 242 41.3
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.3e-26 122.5 246 39.8
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 4.3e-26 122.5 225 40.0
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 5.6e-26 122.1 242 40.9
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 7.3e-26 121.7 251 41.0
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 2.1e-25 120.2 256 42.2
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 2.1e-25 120.2 256 43.4
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 2.1e-25 120.2 256 42.2
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.6e-25 119.4 249 41.8
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 8.0e-25 118.2 255 42.4
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 8.0e-25 118.2 253 40.7
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 8.0e-25 118.2 243 41.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 8.0e-25 118.2 195 46.2
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.0e-24 117.9 247 38.5
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 1.4e-24 117.5 251 40.2
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.4e-24 117.5 240 36.2
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 2.3e-24 116.7 262 41.6
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.0e-24 115.9 121 66.1
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 8.9e-24 114.8 254 41.3
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 8.9e-24 114.8 250 45.2
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 1.5e-23 114.0 247 38.1
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.0e-23 113.6 253 36.8
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 9.8e-23 111.3 248 41.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 9.8e-23 111.3 188 48.9
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.7e-22 110.5 243 40.7
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.2e-22 110.2 252 42.1
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.9e-22 109.8 270 38.9
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 3.7e-22 109.4 255 41.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 4.9e-22 109.0 248 37.1
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.9e-22 109.0 247 36.0
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 6.4e-22 108.6 257 40.9
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.4e-22 108.6 252 40.5
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 6.4e-22 108.6 243 37.4
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 8.3e-22 108.2 253 36.4
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.1e-21 107.8 243 39.1
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.1e-21 107.8 245 38.4
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.4e-21 107.5 260 38.8
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 1.9e-21 107.1 246 35.4
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.1e-21 105.9 242 37.2
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.1e-21 105.9 242 37.2
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 4.1e-21 105.9 249 40.2
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 4.1e-21 105.9 227 38.8
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 4.1e-21 105.9 244 41.4
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 9.2e-21 104.8 254 40.2
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 9.2e-21 104.8 246 38.2
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.2e-20 104.4 252 40.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.6e-20 104.0 159 45.3
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.0e-20 103.6 253 39.9
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.0e-20 103.6 246 38.2
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.7e-20 103.2 245 38.8
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 3.5e-20 102.8 254 40.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.5e-20 102.8 246 37.4
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.6e-20 102.4 252 40.1
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 4.6e-20 102.4 243 40.3
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 6.0e-20 102.1 248 37.9
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 6.0e-20 102.1 223 38.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.8e-20 101.7 168 40.5
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 7.8e-20 101.7 239 42.7
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.0e-19 101.3 252 39.7
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.3e-19 100.9 249 38.2
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 1.7e-19 100.5 248 38.7
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.7e-19 100.5 253 39.1
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 3.9e-19 99.4 243 40.3
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-19 99.0 254 33.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 5.0e-19 99.0 252 38.1
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 6.6e-19 98.6 254 34.3
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.9e-18 97.1 127 51.2
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 7.3e-18 95.1 244 37.7
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 9.5e-18 94.7 125 47.2
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-17 94.4 265 35.5
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 8.1e-17 91.7 268 32.8
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.4e-16 90.9 246 36.2
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.4e-16 90.9 243 30.9
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.3e-16 90.1 235 36.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.3e-16 90.1 257 33.9
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 3.1e-16 89.7 185 35.7
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 5.2e-16 89.0 252 38.5
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 8.9e-16 88.2 242 35.5
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 8.9e-16 88.2 292 34.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 8.9e-16 88.2 133 54.1
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 1.2e-15 87.8 251 35.9
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 2.0e-15 87.0 130 51.5
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.6e-15 86.7 243 34.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 3.4e-15 86.3 274 35.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.8e-15 85.5 249 32.9
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.3e-14 84.3 253 34.4
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.7e-14 84.0 254 32.3
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.9e-14 83.2 266 33.1
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 6.4e-14 82.0 126 53.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.9e-13 80.5 250 35.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.0e-11 73.2 147 36.7
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 8.6e-11 71.6 103 50.5
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.5e-10 70.1 168 41.1
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 9.5e-10 68.2 172 34.9
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-08 64.3 169 29.0
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 1.8e-08 63.9 87 47.1
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-07 61.2 76 56.6
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.2e-07 61.2 76 56.6
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.0e-07 60.5 208 31.7


User provided reference genes

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