Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.40 Carica papaya HOM05D003115 ORTHO05D003595 0.0e+00 2935.6 1526 100.0
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 0.0e+00 1758.4 1622 58.9
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 0.0e+00 1755.3 1592 60.4
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 0.0e+00 1754.6 1620 59.9
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 0.0e+00 1729.5 1606 58.8
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 0.0e+00 1728.4 1618 58.6
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 1723.0 1628 58.2
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 0.0e+00 1719.1 1604 58.6
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 0.0e+00 1713.7 1625 58.1
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1709.5 1511 60.2
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 0.0e+00 1696.8 1605 58.1
Gohir.D10G137700 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 1694.9 1623 57.2
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 0.0e+00 1694.5 1607 58.6
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 0.0e+00 1682.2 1623 56.9
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 0.0e+00 1669.8 1624 56.9
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 0.0e+00 1667.1 1514 59.0
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 0.0e+00 1660.6 1603 57.7
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 0.0e+00 1659.8 1623 56.4
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 1628.2 1609 56.7
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 0.0e+00 1620.9 1609 56.6
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 1611.3 1606 56.3
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 0.0e+00 1595.1 1599 55.8
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 1587.8 1599 54.7
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1586.6 1589 54.9
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 0.0e+00 1577.8 1509 56.9
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 0.0e+00 1574.3 1606 55.7
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 0.0e+00 1569.3 1531 55.9
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 0.0e+00 1566.6 1488 57.6
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 0.0e+00 1563.5 1597 54.2
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 0.0e+00 1562.0 1734 52.7
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 0.0e+00 1555.0 1550 56.0
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 0.0e+00 1554.3 1583 54.4
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 0.0e+00 1550.8 1590 54.4
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 0.0e+00 1549.3 1608 53.4
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1548.9 1494 56.4
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 0.0e+00 1548.5 1507 55.9
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 1546.9 1515 57.0
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 0.0e+00 1545.8 1491 55.8
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 0.0e+00 1545.4 1494 55.6
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1544.6 1490 55.9
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 0.0e+00 1544.3 1490 55.9
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1544.3 1508 55.7
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 0.0e+00 1537.3 1581 54.8
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 0.0e+00 1535.4 1605 53.6
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 0.0e+00 1535.0 1511 55.5
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 0.0e+00 1533.5 1637 54.1
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 0.0e+00 1526.1 1518 55.1
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 0.0e+00 1517.7 1597 53.8
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 0.0e+00 1516.1 1495 55.7
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 0.0e+00 1508.4 1604 53.3
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 0.0e+00 1508.0 1596 53.0
Haze_07640 Corylus avellana HOM05D003115 ORTHO05D003595 0.0e+00 1503.0 1522 55.8
TPR.G14704 Trifolium pratense HOM05D003115 ORTHO05D003595 0.0e+00 1500.7 1605 52.6
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 1495.3 1492 55.2
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 0.0e+00 1478.4 1512 54.8
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 0.0e+00 1473.8 1524 53.4
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 0.0e+00 1473.0 1598 52.0
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 1469.1 1522 53.0
Lalb_Chr23g0269101 Lupinus albus HOM05D003115 ORTHO05D003595 0.0e+00 1459.9 1507 53.9
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1457.2 1584 51.4
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 0.0e+00 1454.9 1510 53.4
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 0.0e+00 1452.2 1569 51.6
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 0.0e+00 1448.3 1531 53.5
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 0.0e+00 1442.6 1496 54.1
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1442.2 1489 53.6
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 0.0e+00 1433.7 1483 53.9
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 0.0e+00 1432.9 1494 53.5
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 0.0e+00 1414.8 1488 52.6
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 0.0e+00 1410.6 1539 51.0
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 1406.0 1530 52.5
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 0.0e+00 1402.1 1536 52.5
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1399.8 1601 50.7
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 0.0e+00 1399.0 1379 56.9
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 0.0e+00 1394.4 1504 50.9
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 0.0e+00 1394.4 1512 51.5
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 1393.6 1504 51.5
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 0.0e+00 1386.7 1538 50.5
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 0.0e+00 1374.0 1520 51.3
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1369.4 1499 51.5
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1342.4 1513 50.3
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1338.2 1494 51.3
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 0.0e+00 1326.2 1496 51.3
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 0.0e+00 1313.5 1584 47.4
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 0.0e+00 1289.6 1514 48.9
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1280.8 1515 48.6
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 0.0e+00 1280.0 1524 49.0
Oeu043446.1 Olea europaea HOM05D003115 ORTHO05D003595 0.0e+00 1277.3 1425 51.6
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1276.2 1474 49.6
Eucgr.H00031 Eucalyptus grandis HOM05D003115 ORTHO05D003595 0.0e+00 1275.8 1317 53.8
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 0.0e+00 1271.1 1539 47.8
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1248.4 1526 48.4
Carub.0001s2398 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1220.7 1518 48.0
HPP92_007257 Vanilla planifolia HOM05D003115 ORTHO05D003595 0.0e+00 1219.1 1446 47.4
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 0.0e+00 1201.8 1499 45.6
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 0.0e+00 1197.6 1131 57.3
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1196.8 1496 48.3
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 0.0e+00 1176.8 1593 46.1
A09p40420 Brassica napus HOM05D003115 ORTHO05D003595 0.0e+00 1171.8 1611 43.9
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 0.0e+00 1165.2 1523 47.0
BraA09t39538Z Brassica rapa HOM05D003115 ORTHO05D003595 0.0e+00 1164.8 1611 44.1
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 0.0e+00 1141.3 1503 46.1
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 0.0e+00 1132.1 1524 46.2
CANSAT78G1701 Cannabis sativa HOM05D003115 ORTHO05D003595 0.0e+00 1111.3 1025 58.5
HPP92_007263 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.5e-310 1068.9 1235 48.7
SEGI_04472 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 3.6e-302 1042.3 1424 42.3
Hund29080 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.9e-296 1022.7 1100 52.0
Hund29082 Selenicereus undatus HOM05D003115 ORTHO05D003595 2.9e-296 1022.7 1100 52.0
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 8.6e-264 914.8 1580 37.4
CDE07G0216 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 4.0e-253 879.4 980 51.1
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 3.4e-252 876.3 1552 36.5
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 3.8e-227 793.1 1460 36.0
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.3e-224 784.6 1034 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 2.1e-222 777.3 1526 34.0
Cfa010533 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.3e-208 731.5 742 56.2
BolC5t31099H Brassica oleracea HOM05D003115 ORTHO05D003595 5.6e-207 726.1 1037 43.6
SMO164G0231 Selaginella moellendorffii HOM05D003115 ORTHO05D003595 1.4e-194 684.9 1480 32.8
Cc00_g09590 Coffea canephora HOM05D003115 ORTHO05D003595 1.4e-165 588.6 719 47.6
BcaC05g26357 Brassica carinata HOM05D003115 ORTHO05D003595 7.5e-159 566.2 888 41.6
Cc00_g24200 Coffea canephora HOM05D003115 ORTHO05D003595 1.2e-156 558.9 568 56.3
CAN.G1155.21 Capsicum annuum HOM05D003115 ORTHO05D003595 3.8e-155 553.9 544 56.1
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 2.8e-137 494.6 485 53.4
C05p23810 Brassica napus HOM05D003115 ORTHO05D003595 3.9e-123 447.6 737 39.5
Hund19003 Selenicereus undatus HOM05D003115 ORTHO05D003595 3.3e-114 417.9 394 57.6
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.8e-104 385.6 416 50.0
PRCOL_00001334 Prasinoderma coloniale HOM05D003115 ORTHO05D003595 5.3e-88 330.9 1512 23.0
Rhsim07G0171500 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.3e-80 304.3 1149 28.6
Rhsim07G0171100 Rhododendron simsii HOM05D003115 ORTHO05D003595 3.4e-79 301.6 1108 28.2
Psat0s3058g0040 Pisum sativum HOM05D003115 ORTHO05D003595 7.6e-79 300.4 338 50.3
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 5.5e-77 294.3 1244 24.6
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 1.2e-71 276.6 1581 22.2
Rhsim02G0023500 Rhododendron simsii HOM05D003115 ORTHO05D003595 5.1e-67 261.2 386 42.2
SEGI_02895 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 2.6e-63 248.8 387 35.7
Cc00_g09610 Coffea canephora HOM05D003115 ORTHO05D003595 1.3e-62 246.5 264 52.7
BraA09t42180Z Brassica rapa HOM05D003115 ORTHO05D003595 3.2e-61 241.9 833 28.1
Atru.chr4.1598 Acer truncatum HOM05D003115 ORTHO05D003595 7.2e-61 240.7 206 60.7
PGSC0003DMG400007741 Solanum tuberosum HOM05D003115 ORTHO05D003595 2.7e-60 238.8 255 52.9
HPP92_007262 Vanilla planifolia HOM05D003115 ORTHO05D003595 9.7e-58 230.3 304 42.4
Psat4g000360 Pisum sativum HOM05D003115 ORTHO05D003595 7.2e-53 214.2 243 46.5
CDE07G1385 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 1.8e-43 183.0 220 42.7
BraA09t42186Z Brassica rapa HOM05D003115 ORTHO05D003595 4.8e-41 174.9 681 26.6
Oeu049761.1 Olea europaea HOM05D003115 ORTHO05D003595 1.8e-40 172.9 299 39.8
Cc00_g27550 Coffea canephora HOM05D003115 ORTHO05D003595 3.1e-40 172.2 140 65.7
Cc00_g09570 Coffea canephora HOM05D003115 ORTHO05D003595 2.7e-39 169.1 140 65.0
C05p23800 Brassica napus HOM05D003115 ORTHO05D003595 1.6e-36 159.8 322 35.1
Hma1.2p1_0039F.1_g024560 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 1.2e-34 153.7 103 73.8
Rhsim06G0083800 Rhododendron simsii HOM05D003115 ORTHO05D003595 2.8e-33 149.1 225 44.4
PGSC0003DMG400026434 Solanum tuberosum HOM05D003115 ORTHO05D003595 8.3e-33 147.5 181 45.9
Psat3g191280 Pisum sativum HOM05D003115 ORTHO05D003595 2.0e-31 142.9 140 57.9
BcaC05g26355 Brassica carinata HOM05D003115 ORTHO05D003595 4.5e-31 141.7 130 56.2
BolC5t31100H Brassica oleracea HOM05D003115 ORTHO05D003595 1.3e-30 140.2 126 61.1
Oeu043445.1 Olea europaea HOM05D003115 ORTHO05D003595 1.5e-29 136.7 109 66.1
Cc00_g35730 Coffea canephora HOM05D003115 ORTHO05D003595 1.8e-27 129.8 103 64.1
Actinidia10072 Actinidia chinensis HOM05D003115 ORTHO05D003595 8.9e-27 127.5 118 52.5
CARHR255300 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.2e-26 127.1 217 37.8
BcaC05g26358 Brassica carinata HOM05D003115 ORTHO05D003595 3.2e-24 119.0 98 63.3
CDE07G0754 Ceratophyllum demersum HOM05D003115 ORTHO05D003595 2.3e-22 112.8 139 48.2
PGSC0003DMG400007742 Solanum tuberosum HOM05D000005 ORTHO05D003595 3.3e-21 109.0 82 70.7
COL.COLO4_08387 Corchorus olitorius HOM05D003115 ORTHO05D003595 4.4e-18 98.6 142 39.4
Hund16694 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.7e-17 96.7 133 43.6
RcHm_v2.0_Chr2g0136151 Rosa chinensis HOM05D003115 ORTHO05D003595 2.3e-11 76.3 89 46.1
SEGI_06154 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 8.9e-11 74.3 72 55.6
AUR62038226 Chenopodium quinoa HOM05D010117 ORTHO05D012431 2.0e-10 73.2 63 58.7
Haze_13685 Corylus avellana HOM05D003115 ORTHO05D003595 7.5e-10 71.2 85 49.4
Haze_25344 Corylus avellana HOM05D003115 ORTHO05D003595 7.5e-10 71.2 90 47.8
Haze_25245 Corylus avellana HOM05D003115 ORTHO05D003595 1.3e-09 70.5 88 47.7
PGSC0003DMG400007745 Solanum tuberosum HOM05D003115 ORTHO05D003595 2.9e-09 69.3 56 55.4
Haze_18491 Corylus avellana HOM05D003115 ORTHO05D003595 6.4e-09 68.2 85 47.1
SEGI_28450 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 8.3e-09 67.8 103 40.8
COL.COLO4_08386 Corchorus olitorius HOM05D003115 ORTHO05D003595 1.2e-07 63.9 39 82.1
Os01g0584800 Oryza sativa ssp. japonica HOM05D003115 ORTHO05D003595 1.7e-06 60.1 48 64.6
BcaC05g26356 Brassica carinata HOM05D003115 ORTHO05D003595 2.3e-06 59.7 110 34.5
CBR_g75372 Chara braunii HOM05D003115 ORTHO05D003595 3.0e-06 59.3 74 41.9


User provided reference genes

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