Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.35 Carica papaya HOM05D003115 ORTHO05D003595 3.8e-52 208.0 112 100.0
Duzib212G0201 Durio zibethinus HOM05D003115 ORTHO05D003595 1.2e-37 159.8 105 79.0
COL.COLO4_33741 Corchorus olitorius HOM05D003115 ORTHO05D003595 2.2e-36 155.6 104 77.9
COL.COLO4_20215 Corchorus olitorius HOM05D003115 ORTHO05D003595 5.0e-36 154.5 105 75.2
Atru.chr4.1597 Acer truncatum HOM05D003115 ORTHO05D003595 1.4e-35 152.9 105 76.2
Thecc.04G196300 Theobroma cacao HOM05D003115 ORTHO05D003595 5.5e-35 151.0 105 75.2
Atru.chr10.1944 Acer truncatum HOM05D003115 ORTHO05D003595 2.1e-34 149.1 105 75.2
Gorai.011G152900 Gossypium raimondii HOM05D003115 ORTHO05D003595 2.1e-34 149.1 105 73.3
PGR119G1374 Punica granatum HOM05D003115 ORTHO05D003595 2.1e-34 149.1 105 75.2
Gohir.A10G128200 Gossypium hirsutum HOM05D003115 ORTHO05D003595 3.6e-34 148.3 105 73.3
Eucgr.H00030 Eucalyptus grandis HOM05D003115 ORTHO05D003595 4.7e-34 147.9 104 76.0
QL04p081909 Quercus lobata HOM05D003115 ORTHO05D003595 7.9e-34 147.1 104 73.1
THA.LOC104808700 Tarenaya hassleriana HOM05D003115 ORTHO05D003595 7.9e-34 147.1 103 74.8
CiPaw.14G076100 Carya illinoinensis HOM05D003115 ORTHO05D003595 1.4e-33 146.4 105 72.4
Cfa009508 Carpinus fangiana HOM05D003115 ORTHO05D003595 1.8e-33 146.0 105 72.4
Dinv16255 Davidia involucrata HOM05D003115 ORTHO05D003595 1.8e-33 146.0 105 73.3
Actinidia35847 Actinidia chinensis HOM05D003115 ORTHO05D003595 1.1e-32 143.3 105 68.6
Ciclev10004117m.g Citrus clementina HOM05D003115 ORTHO05D003595 1.1e-32 143.3 105 71.4
GSVIVG01021009001 Vitis vinifera HOM05D003115 ORTHO05D003595 1.5e-32 142.9 105 71.4
Glyma.18G016000 Glycine max HOM05D003115 ORTHO05D003595 2.6e-32 142.1 107 70.1
Prupe.3G077100 Prunus persica HOM05D003115 ORTHO05D003595 2.6e-32 142.1 104 73.1
CSS0000754 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 3.3e-32 141.7 105 70.5
CSS0038204 Camellia sinensis var. sinensis HOM05D003115 ORTHO05D003595 3.3e-32 141.7 105 70.5
Manes.15G056200 Manihot esculenta HOM05D003115 ORTHO05D003595 3.3e-32 141.7 105 69.5
TWI56G0473 Tripterygium wilfordii HOM05D003115 ORTHO05D003595 9.7e-32 140.2 105 69.5
TAR636G1491 Trochodendron aralioides HOM05D003115 ORTHO05D003595 9.7e-32 140.2 105 68.6
EL10Ac3g07463 Beta vulgaris HOM05D003115 ORTHO05D003595 1.3e-31 139.8 105 68.6
Sed0014363 Sechium edule HOM05D003115 ORTHO05D003595 4.8e-31 137.9 105 69.5
Nn4g23612 Nelumbo nucifera HOM05D003115 ORTHO05D003595 6.3e-31 137.5 105 70.5
vmacro00444 Vaccinium macrocarpon HOM05D003115 ORTHO05D003595 6.3e-31 137.5 105 67.6
MD17G1201300 Malus domestica HOM05D003115 ORTHO05D003595 8.2e-31 137.1 104 69.2
Hund11640 Selenicereus undatus HOM05D003115 ORTHO05D003595 1.1e-30 136.7 105 66.7
Cc00_g24210 Coffea canephora HOM05D003115 ORTHO05D003595 1.4e-30 136.3 104 67.3
Prupe.3G074200 Prunus persica HOM05D003115 ORTHO05D003595 2.4e-30 135.6 104 69.2
DCAR_007830 Daucus carota HOM05D003115 ORTHO05D003595 5.3e-30 134.4 105 63.8
Sc25g0005820 Simmondsia chinensis HOM05D003115 ORTHO05D003595 6.9e-30 134.0 105 69.5
MBI17_g03746_MAGBIO Magnolia biondii HOM05D003115 ORTHO05D003595 9.1e-30 133.7 105 64.8
CARHR238880 Cardamine hirsuta HOM05D003115 ORTHO05D003595 1.5e-29 132.9 104 68.3
Lsat_1_v5_gn_6_59340 Lactuca sativa HOM05D003115 ORTHO05D003595 2.0e-29 132.5 105 65.7
Medtr3g083970 Medicago truncatula HOM05D003115 ORTHO05D003595 3.4e-29 131.7 107 65.4
Phvul.001G253000 Phaseolus vulgaris HOM05D003115 ORTHO05D003595 3.4e-29 131.7 107 63.6
Thhalv10024182m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 4.5e-29 131.3 104 67.3
FvH4_6g30710 Fragaria vesca HOM05D003115 ORTHO05D003595 5.9e-29 131.0 104 68.3
FAN14G0460 Fragaria x ananassa HOM05D003115 ORTHO05D003595 5.9e-29 131.0 104 68.3
FAN02G0145 Fragaria x ananassa HOM05D003115 ORTHO05D003595 7.7e-29 130.6 104 67.3
FAN05G1620 Fragaria x ananassa HOM05D003115 ORTHO05D003595 7.7e-29 130.6 104 67.3
Rhsim09G0059200 Rhododendron simsii HOM05D003115 ORTHO05D003595 7.7e-29 130.6 105 65.7
arahy.Tifrunner.gnm1.ann1.01WSAY Arachis hypogaea HOM05D003115 ORTHO05D003595 1.0e-28 130.2 105 63.8
arahy.Tifrunner.gnm1.ann1.QS081X Arachis hypogaea HOM05D003115 ORTHO05D003595 1.0e-28 130.2 105 63.8
ECA233G4989 Erigeron canadensis HOM05D003115 ORTHO05D003595 1.0e-28 130.2 107 62.6
Sabra16G0201800 Salix brachista HOM05D003115 ORTHO05D003595 1.0e-28 130.2 107 66.4
VMungo1383G2293 Vigna mungo HOM05D003115 ORTHO05D003595 1.0e-28 130.2 107 64.5
MELO3C020422.2 Cucumis melo HOM05D003115 ORTHO05D003595 1.3e-28 129.8 105 65.7
RcHm_v2.0_Chr2g0137101 Rosa chinensis HOM05D003115 ORTHO05D003595 1.3e-28 129.8 104 68.3
CANSAT78G1406 Cannabis sativa HOM05D003115 ORTHO05D003595 1.7e-28 129.4 105 65.7
Peaxi162Scf00047g00136 Petunia axillaris HOM05D003115 ORTHO05D003595 1.7e-28 129.4 104 65.4
FAN09G2094 Fragaria x ananassa HOM05D003115 ORTHO05D003595 2.2e-28 129.0 104 66.3
Potri.001G318800 Populus trichocarpa HOM05D003115 ORTHO05D003595 2.2e-28 129.0 107 65.4
Solyc09g092240.3 Solanum lycopersicum HOM05D003115 ORTHO05D003595 2.2e-28 129.0 104 65.4
Sopen09g035170 Solanum pennellii HOM05D003115 ORTHO05D003595 2.2e-28 129.0 104 65.4
SGA_v2.0_scaffold5G03024 Striga asiatica HOM05D003115 ORTHO05D003595 2.2e-28 129.0 105 63.8
Aqoxy5G00431 Aquilegia oxysepala HOM05D003115 ORTHO05D003595 2.9e-28 128.6 105 63.8
Oeu002918.1 Olea europaea HOM05D003115 ORTHO05D003595 2.9e-28 128.6 104 64.4
Ca_07922_v3 Cicer arietinum L. HOM05D003115 ORTHO05D003595 3.8e-28 128.3 107 61.7
HanXRQChr17g0546471 Helianthus annuus HOM05D003115 ORTHO05D003595 3.8e-28 128.3 105 64.8
Zm00001eb121880 Zea mays HOM05D003115 ORTHO05D003595 5.0e-28 127.9 105 60.0
CsaV3_2G011790 Cucumis sativus L. HOM05D003115 ORTHO05D003595 6.5e-28 127.5 105 64.8
SalBow3G3081 Salvia bowleyana HOM05D003115 ORTHO05D003595 8.5e-28 127.1 104 60.6
Sp7g28860 Schrenkiella parvula HOM05D003115 ORTHO05D003595 8.5e-28 127.1 104 66.3
Nitab4.5_0012127g0010 Nicotiana tabacum HOM05D003115 ORTHO05D003595 1.1e-27 126.7 101 65.3
Carub.0007s0955 Capsella rubella HOM05D003115 ORTHO05D003595 1.4e-27 126.3 104 66.3
Lalb_Chr23g0269091 Lupinus albus HOM05D003115 ORTHO05D003595 1.4e-27 126.3 105 63.8
ClCG06G007990 Citrullus lanatus HOM05D003115 ORTHO05D003595 1.9e-27 125.9 105 63.8
AUR62018566 Chenopodium quinoa HOM05D003115 ORTHO05D003595 5.5e-27 124.4 105 61.0
Lj6g0020396 Lotus japonicus HOM05D003115 ORTHO05D003595 5.5e-27 124.4 105 62.9
AUR62020852 Chenopodium quinoa HOM05D003115 ORTHO05D003595 9.4e-27 123.6 105 61.9
Aa31LG2G19350 Aethionema arabicum HOM05D003115 ORTHO05D003595 1.2e-26 123.2 133 54.9
BcaNung01550 Brassica carinata HOM05D003115 ORTHO05D003595 1.6e-26 122.9 104 63.5
AL7G21090 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.1e-26 122.5 104 64.4
Carub.0005s0720 Capsella rubella HOM05D003115 ORTHO05D003595 2.7e-26 122.1 104 62.5
Migut.B01882 Erythranthe guttata HOM05D003115 ORTHO05D003595 3.6e-26 121.7 104 60.6
SEGI_12321 Sequoiadendron giganteum HOM05D003115 ORTHO05D003595 3.6e-26 121.7 106 58.5
AL1G41060 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 6.1e-26 120.9 104 59.6
AL1G39310 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 1.8e-25 119.4 104 60.6
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 3.0e-25 118.6 105 62.9
Haze_07641 Corylus avellana HOM05D003115 ORTHO05D003595 3.9e-25 118.2 80 75.0
HPP92_007267 Vanilla planifolia HOM05D003115 ORTHO05D003595 3.9e-25 118.2 105 59.0
ATR0665G483 Amborella trichopoda HOM05D003115 ORTHO05D003595 5.2e-25 117.9 105 57.1
AT4G30990 Arabidopsis thaliana HOM05D003115 ORTHO05D003595 8.8e-25 117.1 104 59.6
AL1G38530 Arabidopsis lyrata HOM05D003115 ORTHO05D003595 2.0e-24 115.9 105 61.0
BraA03t15089Z Brassica rapa HOM05D003115 ORTHO05D003595 2.6e-24 115.5 105 61.0
Thhalv10009353m.g Eutrema salsugineum HOM05D003115 ORTHO05D003595 5.7e-24 114.4 104 60.6
PSO210G2420 Papaver somniferum HOM05D003115 ORTHO05D003595 9.7e-24 113.6 105 59.0
PSO832G1670 Papaver somniferum HOM05D003115 ORTHO05D003595 9.7e-24 113.6 105 59.0
unitig_578.g16273 Utricularia gibba HOM05D003115 ORTHO05D003595 4.8e-23 111.3 104 56.7
Lj6C385T7 Lonicera japonica HOM05D003115 ORTHO05D003595 6.3e-23 110.9 79 73.4
C07p58370 Brassica napus HOM05D003115 ORTHO05D003595 4.1e-22 108.2 105 58.1
CARHR024920 Cardamine hirsuta HOM05D003115 ORTHO05D003595 5.3e-22 107.8 104 58.7
BcaNung02730 Brassica carinata HOM05D003115 ORTHO05D003595 2.0e-21 105.9 105 57.1
A03p60500 Brassica napus HOM05D003115 ORTHO05D003595 2.0e-21 105.9 105 57.1
BolC7t46291H Brassica oleracea HOM05D003115 ORTHO05D003595 2.0e-21 105.9 105 57.1
Pp3c3_18970 Physcomitrium patens HOM05D003115 ORTHO05D003595 1.3e-20 103.2 105 49.5
BolC5t31125H Brassica oleracea HOM05D003115 ORTHO05D003595 3.8e-20 101.7 111 51.4
C05p23980 Brassica napus HOM05D003115 ORTHO05D003595 6.5e-20 100.9 104 54.8
C05p24020 Brassica napus HOM05D003115 ORTHO05D003595 6.5e-20 100.9 111 50.5
BolC5t31132H Brassica oleracea HOM05D003115 ORTHO05D003595 6.5e-20 100.9 104 54.8
Mapoly0054s0075 Marchantia polymorpha HOM05D003115 ORTHO05D003595 2.7e-18 95.5 105 47.6
Ah.04g149340 Amaranthus hybridus HOM05D003115 ORTHO05D003595 1.8e-14 82.8 99 49.5
BraA09t39536Z Brassica rapa HOM05D003115 ORTHO05D003595 2.0e-13 79.3 99 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2833 Anthoceros agrestis HOM05D003115 ORTHO05D003595 3.5e-13 78.6 102 45.1
A09p40400 Brassica napus HOM05D003115 ORTHO05D003595 5.9e-13 77.8 81 51.9
Cre10.g461000 Chlamydomonas reinhardtii HOM05D003115 ORTHO05D003595 2.2e-12 75.9 101 41.6
TPR.G14701 Trifolium pratense HOM05D003115 ORTHO05D003595 1.1e-11 73.6 49 81.6
Carub.0001s2400 Capsella rubella HOM05D003115 ORTHO05D003595 3.0e-09 65.5 53 66.0
MCO13G565 Micromonas commoda HOM05D003115 ORTHO05D003595 4.0e-09 65.1 104 35.6
Hma1.2p1_0039F.1_g024570 Hydrangea macrophylla HOM05D003115 ORTHO05D003595 5.2e-09 64.7 50 64.0
HPP92_007258 Vanilla planifolia HOM05D003115 ORTHO05D003595 5.2e-09 64.7 53 64.2
TPR.G860 Trifolium pratense HOM05D003115 ORTHO05D003595 2.6e-08 62.4 57 54.4
BcaB06g28128 Brassica carinata HOM05D022923 ORTHO05D024227 9.8e-08 60.5 49 69.4
A09p40410 Brassica napus HOM05D003115 ORTHO05D019968 3.7e-07 58.5 52 61.5
BraA09t39537Z Brassica rapa HOM05D003115 ORTHO05D019968 3.7e-07 58.5 52 61.5
Nitab4.5_0000697g0090 Nicotiana tabacum HOM05D003115 ORTHO05D003595 8.3e-07 57.4 45 55.6
BolC5t31124H Brassica oleracea HOM05D003115 ORTHO05D019968 2.4e-06 55.8 53 60.4


User provided reference genes

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