Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 2.2e-212 742.3 444 100.0
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.7e-159 565.5 450 78.9
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 5.3e-158 561.6 446 71.3
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 3.5e-157 558.9 447 73.6
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 3.5e-157 558.9 449 78.2
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 2.9e-156 555.8 449 69.5
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.1e-155 553.9 447 72.0
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.3e-153 546.2 453 77.5
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 4.0e-153 545.4 446 73.8
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 2.9e-148 529.3 449 70.4
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-144 517.3 452 67.9
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 1.0e-140 504.2 446 68.6
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.9e-140 502.7 448 73.0
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 1.9e-139 500.0 448 73.0
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 4.7e-138 495.4 447 71.4
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 3.1e-137 492.7 453 68.9
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.9e-137 491.1 447 70.7
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 5.8e-136 488.4 451 71.2
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 9.8e-136 487.6 446 68.2
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 6.4e-135 485.0 465 65.8
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 2.4e-134 483.0 449 65.5
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 5.4e-134 481.9 458 62.0
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 2.0e-133 479.9 443 67.0
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.0e-132 477.6 450 70.7
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 3.0e-132 476.1 447 68.9
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 8.6e-132 474.6 459 68.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 1.1e-131 474.2 444 71.2
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 7.3e-131 471.5 458 62.2
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 7.3e-131 471.5 458 62.2
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 3.4e-128 462.6 453 66.4
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.5e-128 461.5 460 67.0
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 2.9e-127 459.5 449 65.3
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.7e-127 459.1 427 71.2
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 1.1e-126 457.6 452 65.7
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 5.4e-126 455.3 427 67.4
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 1.2e-125 454.1 477 58.1
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 6.0e-125 451.8 446 61.0
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.0e-124 449.5 450 62.4
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 1.9e-123 446.8 454 65.4
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 9.5e-123 444.5 463 62.4
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.6e-122 443.7 446 65.7
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 2.3e-121 439.9 450 64.9
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 3.1e-121 439.5 427 56.9
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 4.0e-121 439.1 451 62.1
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 6.8e-121 438.3 445 67.6
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 8.9e-121 438.0 445 67.4
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 1.3e-119 434.1 451 64.3
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.7e-119 432.6 412 67.5
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.4e-118 429.9 450 63.1
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 4.6e-117 425.6 450 63.1
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 7.8e-117 424.9 450 63.1
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 1.0e-116 424.5 449 57.9
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.0e-116 422.9 445 65.8
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 3.0e-116 422.9 445 65.8
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 6.6e-116 421.8 445 63.1
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 7.3e-115 418.3 445 63.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.4e-113 414.1 445 64.0
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 2.4e-113 413.3 450 61.3
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 4.9e-111 405.6 449 51.7
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 5.4e-110 402.1 422 68.0
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 1.1e-105 387.9 445 60.7
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 6.9e-105 385.2 462 56.1
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 2.4e-102 376.7 450 59.8
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.1e-97 359.8 427 53.6
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 9.0e-97 358.2 380 64.2
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.4e-94 350.9 455 57.6
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 6.9e-89 332.0 456 47.8
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 9.0e-89 331.6 445 54.4
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 1.0e-84 318.2 422 55.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 3.9e-84 316.2 444 43.2
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 2.5e-83 313.5 446 52.7
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 1.6e-82 310.8 460 54.3
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 8.2e-82 308.5 439 47.6
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 3.2e-78 296.6 232 63.4
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 8.8e-68 261.9 367 58.3
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 1.1e-67 261.5 444 47.7
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.5e-67 261.2 465 50.3
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 6.5e-63 245.7 449 53.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 8.8e-52 208.8 135 68.9
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 8.8e-52 208.8 135 68.9
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 1.7e-50 204.5 465 40.6
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 2.6e-43 180.6 274 43.4
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 7.5e-43 179.1 277 42.6
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 1.3e-42 178.3 278 39.2
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 1.3e-42 178.3 278 39.2
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 1.3e-42 178.3 273 39.9
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 3.7e-42 176.8 281 43.4
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 4.8e-42 176.4 450 44.7
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.4e-41 174.1 314 37.6
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 7.0e-41 172.6 450 33.6
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-40 171.0 139 57.6
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 2.0e-40 171.0 139 57.6
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.7e-40 170.6 281 41.6
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 3.5e-40 170.2 211 47.9
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 3.5e-40 170.2 273 40.7
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 4.5e-40 169.9 273 41.4
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 4.5e-40 169.9 286 39.5
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 4.5e-40 169.9 286 39.5
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 1.3e-39 168.3 228 45.6
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 1.3e-39 168.3 161 51.6
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.3e-39 168.3 271 42.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 2.2e-39 167.5 276 40.2
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 2.2e-39 167.5 155 53.5
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 2.9e-39 167.2 166 51.2
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 8.5e-39 165.6 278 42.4
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 8.5e-39 165.6 276 40.2
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 1.1e-38 165.2 466 42.9
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.1e-38 165.2 275 41.1
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 1.9e-38 164.5 271 39.9
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 3.2e-38 163.7 123 58.5
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 4.2e-38 163.3 144 53.5
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 5.5e-38 162.9 272 39.3
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 5.5e-38 162.9 275 38.5
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 5.5e-38 162.9 273 39.2
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 7.2e-38 162.5 123 59.3
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 7.2e-38 162.5 123 57.7
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.2e-37 161.8 270 38.5
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 1.2e-37 161.8 288 38.9
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 2.1e-37 161.0 123 61.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 2.1e-37 161.0 266 38.7
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 2.1e-37 161.0 136 55.9
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.7e-37 160.6 427 30.9
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.7e-37 160.6 283 38.5
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 3.6e-37 160.2 274 39.1
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 3.6e-37 160.2 123 58.5
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 4.7e-37 159.8 140 52.9
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 8.0e-37 159.1 162 49.4
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.8e-36 157.9 123 58.5
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 2.3e-36 157.5 270 39.3
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 3.0e-36 157.1 270 41.9
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 4.0e-36 156.8 148 52.0
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 4.0e-36 156.8 282 39.0
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 6.8e-36 156.0 271 40.2
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.8e-36 155.6 279 39.1
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.0e-35 154.5 123 56.1
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 2.0e-35 154.5 123 56.1
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 2.6e-35 154.1 279 39.1
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 2.6e-35 154.1 123 57.7
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 3.4e-35 153.7 273 38.8
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 4.4e-35 153.3 254 39.4
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 7.5e-35 152.5 278 37.1
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 9.8e-35 152.1 287 38.3
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 9.8e-35 152.1 230 38.3
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 9.8e-35 152.1 230 38.3
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 1.3e-34 151.8 276 39.1
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.7e-34 151.4 173 43.9
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.2e-34 151.0 308 37.0
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 2.2e-34 151.0 277 39.0
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 2.2e-34 151.0 123 54.5
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 2.8e-34 150.6 282 36.9
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.8e-34 150.6 277 37.9
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 2.8e-34 150.6 280 37.9
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 6.3e-34 149.4 279 37.3
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 8.3e-34 149.1 371 47.7
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 2.4e-33 147.5 269 40.5
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 4.1e-33 146.7 140 57.1
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 1.6e-32 144.8 271 36.9
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 1.9e-30 137.9 78 82.1
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 4.1e-09 67.0 81 50.6
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 1.0e-07 62.4 56 55.4
Peaxi162Scf00003g00001 Petunia axillaris HOM05D004237 ORTHO05D005002 8.6e-07 59.3 113 36.3


User provided reference genes

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