Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 5.1e-238 827.4 430 100.0
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 1.8e-155 553.1 427 67.4
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 2.6e-149 532.7 427 65.8
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.3e-148 530.4 427 65.1
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.2e-146 523.9 427 65.1
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 2.1e-143 513.1 431 62.4
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.7e-137 493.4 431 58.9
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 2.3e-137 493.0 389 66.6
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 8.6e-137 491.1 420 60.2
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 4.3e-136 488.8 426 60.1
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 9.8e-133 477.6 432 60.6
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 1.3e-129 467.2 425 58.1
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 2.5e-128 463.0 425 59.3
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 7.3e-128 461.5 426 56.6
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 1.1e-126 457.6 417 57.6
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 5.8e-125 451.8 433 57.5
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 9.9e-125 451.1 427 55.7
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 2.9e-124 449.5 427 55.7
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 4.9e-124 448.7 427 56.9
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 2.4e-123 446.4 422 55.7
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 5.4e-123 445.3 404 57.9
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 3.9e-121 439.1 418 56.0
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 4.3e-120 435.6 426 55.4
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 2.1e-119 433.3 424 55.0
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.2e-117 427.6 427 53.2
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 3.4e-117 426.0 369 59.3
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 1.7e-116 423.7 430 54.4
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 4.9e-116 422.2 430 53.0
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 1.6e-114 417.2 413 53.8
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 3.5e-114 416.0 530 46.8
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 6.0e-114 415.2 419 52.5
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 6.0e-114 415.2 419 52.5
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 7.8e-114 414.8 426 52.1
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 2.3e-113 413.3 425 52.0
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.3e-113 413.3 570 44.0
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 3.9e-113 412.5 415 54.5
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 6.6e-113 411.8 425 52.0
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 8.7e-113 411.4 551 45.2
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 1.9e-112 410.2 432 51.2
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 4.8e-111 405.6 432 50.9
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 1.4e-110 404.1 434 50.5
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 1.4e-110 404.1 432 51.2
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 1.2e-109 401.0 454 48.2
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 1.1e-107 394.4 348 59.5
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 6.0e-106 388.7 426 51.9
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 3.0e-105 386.3 430 50.2
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.1e-104 384.4 418 50.5
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 1.6e-103 380.6 409 49.6
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.4e-102 377.5 450 46.9
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 2.0e-101 373.6 404 49.3
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 7.6e-101 371.7 404 49.0
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 3.8e-100 369.4 418 49.0
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 1.9e-99 367.1 432 47.9
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.2e-99 365.9 408 49.3
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 7.1e-99 365.2 416 49.0
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 1.2e-98 364.4 386 52.8
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 2.1e-98 363.6 424 47.9
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 2.7e-98 363.2 559 42.4
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 2.3e-97 360.1 363 51.0
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 6.7e-97 358.6 409 50.4
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.9e-96 357.1 362 51.7
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.4e-96 355.1 441 46.5
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 9.6e-96 354.8 416 47.1
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 9.6e-96 354.8 441 46.5
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 1.1e-94 351.3 423 47.8
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.4e-94 350.9 408 47.1
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 1.9e-91 340.5 418 44.7
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 7.1e-91 338.6 416 45.2
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 3.9e-89 332.8 403 46.7
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 8.7e-89 331.6 387 49.9
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.6e-87 327.4 384 46.9
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.4e-86 324.3 286 62.2
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 1.8e-86 323.9 397 45.3
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 2.9e-84 316.6 407 44.5
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 4.2e-83 312.8 411 44.5
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 2.1e-82 310.5 402 43.0
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 2.3e-81 307.0 398 44.2
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 5.1e-81 305.8 413 41.6
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 5.1e-81 305.8 384 46.6
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.1e-80 304.7 413 41.4
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 5.7e-80 302.4 258 59.7
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.4e-78 297.7 258 59.3
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 1.2e-77 294.7 405 44.0
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 3.2e-75 286.6 354 45.8
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 2.3e-73 280.4 386 42.0
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 3.9e-73 279.6 354 46.0
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 2.5e-72 276.9 377 44.0
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 7.4e-72 275.4 348 44.0
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 2.4e-70 270.4 389 41.6
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 7.2e-67 258.8 388 43.8
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.8e-65 254.2 245 59.6
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 2.0e-61 240.7 170 68.2
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 1.0e-60 238.4 426 38.0
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 7.2e-59 232.3 282 48.6
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 1.2e-58 231.5 261 50.2
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 3.0e-57 226.9 306 43.5
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 3.7e-55 219.9 420 33.3
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 4.8e-55 219.5 271 49.1
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 2.4e-54 217.2 222 49.5
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.0e-53 214.2 305 42.3
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 1.3e-52 211.5 305 42.0
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 8.5e-52 208.8 310 41.9
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 8.0e-50 202.2 263 43.0
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 4.8e-47 193.0 150 64.0
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 5.4e-46 189.5 255 42.4
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 2.9e-44 183.7 351 35.3
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.2e-40 171.8 138 63.0
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 2.3e-33 147.5 252 39.3
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.7e-31 140.2 268 36.2
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 1.8e-30 137.9 164 50.6
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 4.6e-29 133.3 169 46.7
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 2.3e-28 131.0 417 28.8
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 1.4e-25 121.7 140 50.7
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 2.0e-24 117.9 129 48.8
FAN17G0457 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.9e-20 103.6 133 44.4
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 7.3e-19 99.4 94 55.3
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.8e-17 92.8 123 41.5
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 6.8e-17 92.8 123 41.5
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 5.8e-16 89.7 109 46.8
Mapoly0008s0044 Marchantia polymorpha HOM05D006138 ORTHO05D007778 1.9e-14 84.7 457 22.5
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 5.2e-09 66.6 63 54.0
Ciclev10006864m.g Citrus clementina HOM05D006138 ORTHO05D007778 8.9e-09 65.9 69 52.2
RcHm_v2.0_Chr4g0419401 Rosa chinensis HOM05D006138 ORTHO05D007778 3.4e-08 63.9 95 38.9
Sabra17G0071800 Salix brachista HOM05D006138 ORTHO05D007778 2.9e-07 60.8 124 35.5
BolC5t33834H Brassica oleracea HOM05D006138 ORTHO05D032537 1.1e-06 58.9 73 41.1
CSS0037607 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.4e-06 58.5 57 57.9
BcaC09g47899 Brassica carinata HOM05D006138 ORTHO05D032537 3.2e-06 57.4 73 39.7
C02p59990 Brassica napus HOM05D006138 ORTHO05D032537 7.1e-06 56.2 73 39.7


User provided reference genes

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