Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.15 Carica papaya HOM05D002342 ORTHO05D002407 1.0e-210 736.5 372 100.0
Cpa.g.c30822.1 Carica papaya HOM05D002342 ORTHO05D002407 4.1e-135 485.3 316 81.3
Haze_11627 Corylus avellana HOM05D002342 ORTHO05D002407 4.6e-54 216.1 334 41.3
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.1e-52 211.5 310 43.9
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 4.8e-51 206.1 312 41.3
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.0e-48 198.4 331 39.0
CiPaw.01G119000 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.5e-48 195.7 317 38.8
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 8.4e-48 195.3 326 38.3
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.1e-47 194.9 331 39.6
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.4e-47 194.5 313 40.9
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 1.6e-46 191.0 318 40.6
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 7.9e-46 188.7 319 39.2
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 3.9e-45 186.4 316 38.9
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 5.1e-45 186.0 316 38.6
Dinv27217 Davidia involucrata HOM05D002342 ORTHO05D002407 1.5e-44 184.5 317 40.4
Prupe.1G159000 Prunus persica HOM05D002342 ORTHO05D002407 1.5e-44 184.5 304 39.8
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.5e-44 183.7 330 38.8
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 3.3e-44 183.3 325 38.8
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 5.7e-44 182.6 289 41.9
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 7.4e-44 182.2 316 40.2
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 7.4e-44 182.2 330 38.2
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 7.4e-44 182.2 330 38.2
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 9.7e-44 181.8 318 38.4
CiPaw.01G119300 Carya illinoinensis HOM05D002342 ORTHO05D002407 1.3e-43 181.4 318 38.4
Atru.chr4.1627 Acer truncatum HOM05D002342 ORTHO05D002407 2.8e-43 180.3 310 37.4
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 2.8e-43 180.3 287 40.4
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 4.8e-43 179.5 325 38.2
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.4e-42 177.9 317 35.6
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 2.4e-42 177.2 287 38.3
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.4e-42 177.2 312 38.8
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 3.1e-42 176.8 302 38.7
QL05p014631 Quercus lobata HOM05D002342 ORTHO05D002407 4.1e-42 176.4 290 37.2
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 6.9e-42 175.6 306 37.9
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 2.0e-41 174.1 286 38.1
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 2.0e-41 174.1 316 38.6
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.6e-41 173.7 312 36.2
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 4.5e-41 172.9 309 37.5
Hma1.2p1_0383F.1_g140560 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 4.5e-41 172.9 309 39.2
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 4.5e-41 172.9 316 35.8
Eucgr.H02741 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.6e-41 172.2 317 36.3
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.0e-40 171.8 288 39.2
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 1.3e-40 171.4 287 38.3
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 1.3e-40 171.4 288 39.2
C08p07730 Brassica napus HOM05D002342 ORTHO05D002407 1.3e-40 171.4 287 38.3
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 1.3e-40 171.4 287 38.3
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.3e-40 171.4 288 38.9
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-40 171.4 311 37.3
FAN27G2824 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-40 171.4 309 38.2
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.3e-40 171.4 311 39.9
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.7e-40 171.0 311 37.3
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 5.0e-40 169.5 329 36.5
Lj6C525G6 Lonicera japonica HOM05D002342 ORTHO05D002407 5.0e-40 169.5 308 37.0
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 5.0e-40 169.5 303 37.0
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 8.5e-40 168.7 283 40.6
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 1.4e-39 167.9 321 38.9
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.4e-39 167.9 301 36.2
Atru.chr4.1622 Acer truncatum HOM05D002342 ORTHO05D002407 1.9e-39 167.5 282 38.3
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.9e-39 167.5 302 37.1
Hma1.2p1_0383F.1_g140370 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 2.5e-39 167.2 302 37.4
Lj6C526T11 Lonicera japonica HOM05D002342 ORTHO05D002407 2.5e-39 167.2 309 36.2
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 3.2e-39 166.8 327 35.8
Eucgr.A01634 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.2e-39 166.4 309 33.7
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 4.2e-39 166.4 311 35.7
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 5.5e-39 166.0 312 36.2
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 9.3e-39 165.2 306 36.3
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 3.6e-38 163.3 287 37.6
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 3.6e-38 163.3 309 37.5
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 3.6e-38 163.3 314 35.4
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 6.1e-38 162.5 293 38.2
Oeu045313.1 Olea europaea HOM05D002342 ORTHO05D002407 2.3e-37 160.6 311 37.6
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.3e-37 160.6 292 37.7
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 3.0e-37 160.2 291 39.2
Lj6C517T2 Lonicera japonica HOM05D002342 ORTHO05D002407 3.9e-37 159.8 310 34.8
Hma1.2p1_0383F.1_g140620 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 6.7e-37 159.1 283 37.5
AUR62018579 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.5e-36 157.9 316 38.3
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.5e-36 157.9 316 38.3
Lalb_Chr12g0205541 Lupinus albus HOM05D002342 ORTHO05D002407 1.5e-36 157.9 318 36.2
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.9e-36 157.5 315 37.1
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 1.9e-36 157.5 314 34.4
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 3.3e-36 156.8 297 35.0
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 7.4e-36 155.6 314 33.4
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 7.4e-36 155.6 323 36.2
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 9.7e-36 155.2 314 36.0
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 1.3e-35 154.8 313 35.1
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.7e-35 154.5 335 34.9
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.2e-35 154.1 307 35.5
Lj6C523G2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.2e-35 154.1 314 34.7
Lj6C525G9 Lonicera japonica HOM05D002342 ORTHO05D002407 2.2e-35 154.1 299 34.8
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 2.2e-35 154.1 296 37.5
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 2.8e-35 153.7 290 34.8
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 2.8e-35 153.7 297 35.0
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 2.8e-35 153.7 327 33.9
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 2.8e-35 153.7 315 33.0
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 3.7e-35 153.3 322 36.6
MD04G1013100 Malus domestica HOM05D002342 ORTHO05D002407 5.3e-34 149.4 279 36.6
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 6.9e-34 149.1 299 35.8
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 9.1e-34 148.7 305 33.4
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 1.5e-33 147.9 317 34.1
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.4e-33 146.7 300 35.3
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 3.4e-33 146.7 319 32.6
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.4e-33 146.7 301 35.5
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 4.5e-33 146.4 315 37.1
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 5.9e-33 146.0 306 36.3
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.7e-32 144.4 323 33.4
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 2.2e-32 144.1 303 35.3
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 3.8e-32 143.3 310 33.2
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 5.0e-32 142.9 267 36.0
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 1.1e-31 141.7 303 34.3
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.5e-31 140.6 289 34.6
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 3.2e-31 140.2 316 33.9
VMungo1127G2260 Vigna mungo HOM05D002342 ORTHO05D002407 3.2e-31 140.2 301 34.6
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 4.2e-31 139.8 290 34.8
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.2e-31 139.8 290 34.8
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 4.2e-31 139.8 301 32.6
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 5.5e-31 139.4 288 35.4
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.1e-30 137.5 290 34.5
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 2.1e-30 137.5 355 31.0
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 2.1e-30 137.5 325 33.8
Eucgr.H02759 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.6e-30 136.7 312 33.7
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 4.7e-30 136.3 161 46.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 6.1e-30 136.0 303 32.7
Eucgr.H02757 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.9e-30 135.6 313 34.2
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.4e-29 134.8 290 32.1
Eucgr.H02755 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.4e-29 134.8 291 33.7
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.3e-29 134.0 306 33.0
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 2.3e-29 134.0 162 46.3
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.0e-29 133.7 288 30.2
Eucgr.H02754 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.0e-29 133.7 310 32.9
ATR0829G112 Amborella trichopoda HOM05D002342 ORTHO05D002407 3.9e-29 133.3 320 33.4
AL1G18710 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.9e-29 133.3 132 51.5
ECA233G4033 Erigeron canadensis HOM05D002342 ORTHO05D002407 5.1e-29 132.9 315 32.7
Aa31LG9G3860 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.5e-28 131.3 177 42.9
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 1.5e-28 131.3 132 51.5
HPP92_020875 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.5e-28 131.3 278 33.1
HPP92_028111 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.5e-28 131.3 295 32.9
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 3.3e-28 130.2 132 50.8
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 3.3e-28 130.2 132 50.8
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 3.3e-28 130.2 132 50.8
Lj6A517T28 Lonicera japonica HOM05D002342 ORTHO05D002407 3.3e-28 130.2 285 34.0
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 5.7e-28 129.4 326 32.8
Eucgr.H02765 Eucalyptus grandis HOM05D002342 ORTHO05D002407 9.7e-28 128.6 313 32.9
HanXRQChr16g0515531 Helianthus annuus HOM05D000002 ORTHO05D000001 1.7e-27 127.9 287 34.5
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 2.2e-27 127.5 221 35.7
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 6.3e-27 125.9 132 49.2
HanXRQChr02g0059601 Helianthus annuus HOM05D002342 ORTHO05D002407 6.3e-27 125.9 280 33.9
HanXRQChr02g0059621 Helianthus annuus HOM05D002342 ORTHO05D002407 6.3e-27 125.9 280 33.9
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.4e-26 124.8 232 35.8
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 5.3e-26 122.9 107 56.1
Eucgr.H02762 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.0e-25 120.9 314 31.2
HPP92_003865 Vanilla planifolia HOM05D002342 ORTHO05D002407 5.9e-25 119.4 310 29.0
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 5.9e-25 119.4 323 30.3
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.3e-24 118.2 145 42.8
ECA246G4020 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.9e-24 117.1 140 44.3
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.1e-23 115.2 111 49.5
CARHR008160 Cardamine hirsuta HOM05D002342 ORTHO05D002407 5.5e-23 112.8 196 38.8
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 8.0e-22 109.0 168 36.9
SHI00031 Sapria himalayana HOM05D002342 ORTHO05D002407 8.0e-22 109.0 321 28.3
PGSC0003DMG402026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 8.0e-22 109.0 161 39.1
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.0e-21 108.6 168 37.5
Lj6A516T55 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-21 108.6 279 31.2
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 1.0e-21 108.6 320 27.5
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 2.3e-21 107.5 312 29.8
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.9e-21 106.7 131 45.8
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 2.0e-20 104.4 124 42.7
SEGI_10632 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 3.7e-19 100.1 318 27.4
SEGI_23744 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 3.7e-19 100.1 318 27.4
CAN.G1333.3 Capsicum annuum HOM05D002342 ORTHO05D002407 4.8e-19 99.8 126 41.3
TAR365G0582 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.4e-18 97.4 81 58.0
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 5.3e-18 96.3 127 40.9
SMO337G0030 Selaginella moellendorffii HOM05D002342 ORTHO05D002407 4.2e-15 86.7 282 25.5
AagrBONN_evm.TU.Sc2ySwM_228.1729 Anthoceros agrestis HOM05D002342 ORTHO05D002407 2.7e-14 84.0 139 37.4
TAR365G0886 Trochodendron aralioides HOM05D002342 ORTHO05D002407 2.3e-13 80.9 57 66.7
TPR.G357 Trifolium pratense HOM05D038100 ORTHO05D036767 6.7e-13 79.3 100 36.0
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 2.4e-10 70.9 101 38.6
Nitab4.5_0006964g0030 Nicotiana tabacum HOM05D002342 ORTHO05D002407 9.1e-10 68.9 244 30.3
VMungo1383G0106 Vigna mungo HOM05D002342 ORTHO05D002407 1.7e-08 64.7 137 32.8
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 8.5e-08 62.4 71 49.3
TPR.G3986 Trifolium pratense HOM05D002342 ORTHO05D002407 2.5e-07 60.8 95 33.7
Cre14.g608150 Chlamydomonas reinhardtii HOM05D002342 ORTHO05D002407 1.6e-06 58.2 66 45.5


User provided reference genes

Program Settings