Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc83.102 Carica papaya HOM05D002117 ORTHO05D002151 1.1e-43 179.5 89 100.0
Cpa.g.sc728.1 Carica papaya HOM05D002117 ORTHO05D002151 3.5e-16 88.2 57 80.7
SalBow3G3483 Salvia bowleyana HOM05D002117 ORTHO05D002151 1.3e-15 86.3 73 61.6
Nitab4.5_0013083g0010 Nicotiana tabacum HOM05D002117 ORTHO05D002151 5.0e-15 84.3 74 56.8
BcaB02g06932 Brassica carinata HOM05D002117 ORTHO05D002151 6.6e-15 84.0 80 53.8
Nitab4.5_0003058g0040 Nicotiana tabacum HOM05D002117 ORTHO05D002151 8.6e-15 83.6 74 56.8
PGSC0003DMG400003814 Solanum tuberosum HOM05D002117 ORTHO05D002151 8.6e-15 83.6 78 53.8
Solyc09g074260.1 Solanum lycopersicum HOM05D002117 ORTHO05D002151 4.2e-14 81.3 75 54.7
Sopen09g029080 Solanum pennellii HOM05D002117 ORTHO05D002151 4.2e-14 81.3 75 54.7
C08p00560 Brassica napus HOM05D002117 ORTHO05D002151 7.2e-14 80.5 75 53.3
Oeu002689.1 Olea europaea HOM05D002117 ORTHO05D002151 7.2e-14 80.5 73 56.2
Ca_10387_v3 Cicer arietinum L. HOM05D002117 ORTHO05D002151 1.2e-13 79.7 72 54.2
Hma1.2p1_0209F.1_g089300 Hydrangea macrophylla HOM05D002117 ORTHO05D002151 1.6e-13 79.3 59 64.4
VMungo0720G1483 Vigna mungo HOM05D002117 ORTHO05D002151 1.6e-13 79.3 71 54.9
Atru.chr5.1312 Acer truncatum HOM05D002117 ORTHO05D002151 2.1e-13 79.0 59 66.1
CSS0022446 Camellia sinensis var. sinensis HOM05D002117 ORTHO05D002151 2.1e-13 79.0 78 48.7
ClCG09G006680 Citrullus lanatus HOM05D002117 ORTHO05D002151 2.1e-13 79.0 71 59.2
Dinv11277 Davidia involucrata HOM05D002117 ORTHO05D002151 2.1e-13 79.0 59 62.7
Thhalv10028712m.g Eutrema salsugineum HOM05D002117 ORTHO05D002151 2.1e-13 79.0 75 56.0
THA.LOC104826006 Tarenaya hassleriana HOM05D002117 ORTHO05D002151 2.1e-13 79.0 72 58.3
Oeu001451.1 Olea europaea HOM05D002117 ORTHO05D002151 3.6e-13 78.2 59 62.7
Glyma.10G023100 Glycine max HOM05D002117 ORTHO05D002151 4.7e-13 77.8 73 49.3
HanXRQChr11g0339121 Helianthus annuus HOM05D002117 ORTHO05D002151 4.7e-13 77.8 79 49.4
Hma1.2p1_1651F.1_g295740 Hydrangea macrophylla HOM05D002117 ORTHO05D002151 4.7e-13 77.8 70 57.1
Oeu045201.2 Olea europaea HOM05D002117 ORTHO05D002151 4.7e-13 77.8 94 47.9
GSVIVG01011042001 Vitis vinifera HOM05D002117 ORTHO05D002151 6.1e-13 77.4 70 58.6
CARHR251400 Cardamine hirsuta HOM05D002117 ORTHO05D002151 8.0e-13 77.0 73 56.2
Dinv32977 Davidia involucrata HOM05D002117 ORTHO05D002151 1.0e-12 76.6 71 56.3
Glyma.02G150900 Glycine max HOM05D002117 ORTHO05D002151 1.0e-12 76.6 73 50.7
Manes.05G070900 Manihot esculenta HOM05D002117 ORTHO05D002151 1.0e-12 76.6 59 64.4
Sp6g03050 Schrenkiella parvula HOM05D002117 ORTHO05D002151 1.0e-12 76.6 75 53.3
Actinidia00718 Actinidia chinensis HOM05D002117 ORTHO05D002151 1.4e-12 76.3 59 61.0
CDE05G1044 Ceratophyllum demersum HOM05D002117 ORTHO05D002151 1.4e-12 76.3 73 53.4
AL6G49920 Arabidopsis lyrata HOM05D002117 ORTHO05D002151 1.8e-12 75.9 70 58.6
CANSAT25G0410 Cannabis sativa HOM05D002117 ORTHO05D002151 1.8e-12 75.9 59 64.4
Lj2P1181T18 Lonicera japonica HOM05D002117 ORTHO05D002151 1.8e-12 75.9 74 52.7
Lj2P1220T26 Lonicera japonica HOM05D002117 ORTHO05D002151 1.8e-12 75.9 74 52.7
Lsat_1_v5_gn_5_189941 Lactuca sativa HOM05D002117 ORTHO05D002151 2.3e-12 75.5 73 50.7
Duzib133G0448 Durio zibethinus HOM05D002117 ORTHO05D002151 4.0e-12 74.7 56 64.3
Lj5g0025828 Lotus japonicus HOM05D002117 ORTHO05D002151 4.0e-12 74.7 75 49.3
BcaC07g36968 Brassica carinata HOM05D002117 ORTHO05D002151 5.2e-12 74.3 80 48.8
Carub.0006s3404 Capsella rubella HOM05D002117 ORTHO05D002151 5.2e-12 74.3 73 56.2
Phvul.007G167800 Phaseolus vulgaris HOM05D002117 ORTHO05D002151 5.2e-12 74.3 57 61.4
MSTRG.17428 Avicennia marina HOM05D002117 ORTHO05D002151 6.8e-12 73.9 57 64.9
Medtr1g089280 Medicago truncatula HOM05D002117 ORTHO05D002151 6.8e-12 73.9 57 59.6
vmacro02532 Vaccinium macrocarpon HOM05D002117 ORTHO05D002151 6.8e-12 73.9 55 63.6
A10p01980 Brassica napus HOM05D002117 ORTHO05D002151 8.9e-12 73.6 58 60.3
CiPaw.07G097600 Carya illinoinensis HOM05D002117 ORTHO05D002151 8.9e-12 73.6 55 63.6
MELO3C015878.2 Cucumis melo HOM05D002117 ORTHO05D002151 8.9e-12 73.6 59 61.0
CsaV3_7G028440 Cucumis sativus L. HOM05D002117 ORTHO05D002151 8.9e-12 73.6 59 61.0
ECA248G3319 Erigeron canadensis HOM05D002117 ORTHO05D002151 8.9e-12 73.6 71 52.1
C09p02450 Brassica napus HOM05D002117 ORTHO05D002151 1.5e-11 72.8 74 52.7
BolC9t53175H Brassica oleracea HOM05D002117 ORTHO05D002151 1.5e-11 72.8 74 52.7
Cc01_g19960 Coffea canephora HOM05D002117 ORTHO05D002151 1.5e-11 72.8 58 62.1
MBI18_g16960_MAGBIO Magnolia biondii HOM05D002117 ORTHO05D002151 1.5e-11 72.8 58 62.1
Prupe.8G249500 Prunus persica HOM05D002117 ORTHO05D002151 1.5e-11 72.8 55 61.8
SalBow6G0670 Salvia bowleyana HOM05D002117 ORTHO05D002151 1.5e-11 72.8 58 62.1
MSTRG.12582 Avicennia marina HOM05D002117 ORTHO05D002151 2.6e-11 72.0 59 62.7
A09p02330 Brassica napus HOM05D002117 ORTHO05D002151 2.6e-11 72.0 74 52.7
FvH4_2g24330 Fragaria vesca HOM05D002117 ORTHO05D002151 2.6e-11 72.0 54 64.8
FAN15G3146 Fragaria x ananassa HOM05D002117 ORTHO05D002151 2.6e-11 72.0 54 64.8
FAN24G1921 Fragaria x ananassa HOM05D002117 ORTHO05D002151 2.6e-11 72.0 54 64.8
Gohir.A08G071200 Gossypium hirsutum HOM05D002117 ORTHO05D002151 2.6e-11 72.0 55 63.6
Gorai.004G084400 Gossypium raimondii HOM05D002117 ORTHO05D002151 2.6e-11 72.0 55 63.6
Lalb_Chr06g0163251 Lupinus albus HOM05D002117 ORTHO05D002151 2.6e-11 72.0 71 50.7
TWI23G0334 Tripterygium wilfordii HOM05D002117 ORTHO05D002151 2.6e-11 72.0 59 57.6
BcaB01g01929 Brassica carinata HOM05D002117 ORTHO05D002151 3.4e-11 71.6 81 50.6
BcaB01g01930 Brassica carinata HOM05D002117 ORTHO05D002151 3.4e-11 71.6 81 50.6
A08p37360 Brassica napus HOM05D002117 ORTHO05D002151 3.4e-11 71.6 58 58.6
BraA08t35633Z Brassica rapa HOM05D002117 ORTHO05D002151 3.4e-11 71.6 58 58.6
PGR119G0995 Punica granatum HOM05D002117 ORTHO05D002151 3.4e-11 71.6 59 59.3
BraA09t35882Z Brassica rapa HOM05D002117 ORTHO05D002151 4.4e-11 71.2 73 53.4
MD03G1273000 Malus domestica HOM05D002117 ORTHO05D002151 4.4e-11 71.2 53 66.0
Peaxi162Scf00006g00386 Petunia axillaris HOM05D002117 ORTHO05D002151 4.4e-11 71.2 74 52.7
PGR044G0680 Punica granatum HOM05D002117 ORTHO05D002151 4.4e-11 71.2 59 59.3
CARHR002790 Cardamine hirsuta HOM05D002117 ORTHO05D002151 5.7e-11 70.9 53 66.0
COL.COLO4_08059 Corchorus olitorius HOM05D002117 ORTHO05D002151 5.7e-11 70.9 55 61.8
FAN20G0726 Fragaria x ananassa HOM05D002117 ORTHO05D002151 5.7e-11 70.9 54 63.0
Lalb_Chr21g0306661 Lupinus albus HOM05D002117 ORTHO05D002151 5.7e-11 70.9 71 49.3
MSTRG.21590 Avicennia marina HOM05D002117 ORTHO05D002151 7.5e-11 70.5 50 70.0
BolC8t46856H Brassica oleracea HOM05D002117 ORTHO05D002151 7.5e-11 70.5 58 56.9
QL12p023137 Quercus lobata HOM05D002117 ORTHO05D002151 7.5e-11 70.5 56 58.9
Thecc.01G287100 Theobroma cacao HOM05D002117 ORTHO05D002151 7.5e-11 70.5 55 61.8
BraA10t42471Z Brassica rapa HOM05D002117 ORTHO05D002151 9.8e-11 70.1 53 64.2
MD11G1294000 Malus domestica HOM05D002117 ORTHO05D002151 9.8e-11 70.1 53 64.2
Migut.N02130 Erythranthe guttata HOM05D002117 ORTHO05D002151 1.3e-10 69.7 59 61.0
Sp1g02410 Schrenkiella parvula HOM05D002117 ORTHO05D002151 1.3e-10 69.7 53 64.2
AT4G03010 Arabidopsis thaliana HOM05D002117 ORTHO05D002151 1.7e-10 69.3 58 58.6
TPR.G16936 Trifolium pratense HOM05D002117 ORTHO05D002151 1.7e-10 69.3 56 57.1
Gohir.D08G079300 Gossypium hirsutum HOM05D002117 ORTHO05D002151 2.2e-10 68.9 55 61.8
Nn3g21211 Nelumbo nucifera HOM05D002117 ORTHO05D002151 2.2e-10 68.9 54 63.0
Psat6g169160 Pisum sativum HOM05D002117 ORTHO05D002151 2.2e-10 68.9 53 60.4
RcHm_v2.0_Chr6g0292211 Rosa chinensis HOM05D002117 ORTHO05D002151 2.2e-10 68.9 50 68.0
AL1G12940 Arabidopsis lyrata HOM05D002117 ORTHO05D002151 2.8e-10 68.6 53 62.3
MELO3C014415.2 Cucumis melo HOM05D002117 ORTHO05D002151 2.8e-10 68.6 53 62.3
CsaV3_6G037010 Cucumis sativus L. HOM05D002117 ORTHO05D002151 2.8e-10 68.6 53 62.3
SGA_v2.0_scaffold1G00431 Striga asiatica HOM05D002117 ORTHO05D002151 2.8e-10 68.6 55 61.8
AT1G03440 Arabidopsis thaliana HOM05D002117 ORTHO05D002151 3.7e-10 68.2 53 62.3
BcaC05g24529 Brassica carinata HOM05D002117 ORTHO05D002151 3.7e-10 68.2 53 62.3
C05p01930 Brassica napus HOM05D002117 ORTHO05D002151 3.7e-10 68.2 53 62.3
BolC5t28972H Brassica oleracea HOM05D002117 ORTHO05D002151 3.7e-10 68.2 53 62.3
Migut.D00246 Erythranthe guttata HOM05D002117 ORTHO05D002151 3.7e-10 68.2 53 64.2
Thhalv10007833m.g Eutrema salsugineum HOM05D002117 ORTHO05D002151 3.7e-10 68.2 56 58.9
ClCG07G000150 Citrullus lanatus HOM05D002117 ORTHO05D002151 4.9e-10 67.8 53 64.2
Gohir.A08G184500 Gossypium hirsutum HOM05D002117 ORTHO05D002151 4.9e-10 67.8 53 64.2
Gohir.D08G202928 Gossypium hirsutum HOM05D002117 ORTHO05D002151 4.9e-10 67.8 53 64.2
Gorai.004G214500 Gossypium raimondii HOM05D002117 ORTHO05D002151 4.9e-10 67.8 53 64.2
Sabra14G0102600 Salix brachista HOM05D002117 ORTHO05D002151 4.9e-10 67.8 50 66.0
TWI14G1283 Tripterygium wilfordii HOM05D002117 ORTHO05D002151 4.9e-10 67.8 50 64.0
Rhsim13G0020500 Rhododendron simsii HOM05D002117 ORTHO05D002151 6.3e-10 67.4 55 60.0
Lsat_1_v5_gn_9_1701 Lactuca sativa HOM05D002117 ORTHO05D002151 8.3e-10 67.0 53 62.3
Peaxi162Scf01039g10028 Petunia axillaris HOM05D002117 ORTHO05D002151 8.3e-10 67.0 50 68.0
Sc17g0003810 Simmondsia chinensis HOM05D002117 ORTHO05D002151 8.3e-10 67.0 50 66.0
CDE09G0580 Ceratophyllum demersum HOM05D002117 ORTHO05D002151 1.1e-09 66.6 71 50.7
Potri.014G136100 Populus trichocarpa HOM05D002117 ORTHO05D002151 1.1e-09 66.6 50 64.0
Solyc06g084420.1 Solanum lycopersicum HOM05D002117 ORTHO05D002151 1.1e-09 66.6 48 66.7
Sopen06g035810 Solanum pennellii HOM05D002117 ORTHO05D002151 1.1e-09 66.6 48 66.7
PGSC0003DMG400020178 Solanum tuberosum HOM05D002117 ORTHO05D002151 1.1e-09 66.6 48 66.7
Ah.08g212810 Amaranthus hybridus HOM05D002117 ORTHO05D002151 1.4e-09 66.2 50 64.0
EL10Ac7g17174 Beta vulgaris HOM05D002117 ORTHO05D002151 1.4e-09 66.2 50 64.0
SGA_v2.0_scaffold36G14370 Striga asiatica HOM05D002117 ORTHO05D002151 1.4e-09 66.2 50 64.0
CSS0019881 Camellia sinensis var. sinensis HOM05D002117 ORTHO05D002151 2.4e-09 65.5 50 62.0
Cfa006062 Carpinus fangiana HOM05D002117 ORTHO05D002151 2.4e-09 65.5 56 55.4
DCAR_002773 Daucus carota HOM05D002117 ORTHO05D002151 2.4e-09 65.5 51 62.7
Duzib138G1773 Durio zibethinus HOM05D002117 ORTHO05D002151 2.4e-09 65.5 55 56.4
Aqoxy2G03171 Aquilegia oxysepala HOM05D002117 ORTHO05D002151 3.1e-09 65.1 50 66.0
Haze_04788 Corylus avellana HOM05D002117 ORTHO05D002151 3.1e-09 65.1 55 56.4
Gohir.A12G007400 Gossypium hirsutum HOM05D002117 ORTHO05D002151 3.1e-09 65.1 56 57.1
Manes.01G212100 Manihot esculenta HOM05D002117 ORTHO05D002151 3.1e-09 65.1 48 66.7
Nitab4.5_0001949g0010 Nicotiana tabacum HOM05D002117 ORTHO05D002151 3.1e-09 65.1 48 64.6
Nitab4.5_0002093g0050 Nicotiana tabacum HOM05D002117 ORTHO05D002151 3.1e-09 65.1 48 64.6
CAN.G1682.5 Capsicum annuum HOM05D002117 ORTHO05D002151 4.1e-09 64.7 48 64.6
Ciclev10020489m.g Citrus clementina HOM05D002117 ORTHO05D002151 4.1e-09 64.7 50 64.0
Aa31LG5G2560 Aethionema arabicum HOM05D002117 ORTHO05D002151 5.4e-09 64.3 61 54.1
PSO063G3055 Papaver somniferum HOM05D002117 ORTHO05D002151 5.4e-09 64.3 55 60.0
PSO832G2803 Papaver somniferum HOM05D002117 ORTHO05D002151 5.4e-09 64.3 55 60.0
AUR62036683 Chenopodium quinoa HOM05D002117 ORTHO05D002151 7.0e-09 63.9 48 64.6
Sed0011168 Sechium edule HOM05D002117 ORTHO05D002151 7.0e-09 63.9 53 62.3
BcaB01g01990 Brassica carinata HOM05D002117 ORTHO05D002151 9.2e-09 63.5 80 47.5
CDE02G4801 Ceratophyllum demersum HOM05D002117 ORTHO05D002151 9.2e-09 63.5 60 50.0
HanXRQChr01g0002051 Helianthus annuus HOM05D002117 ORTHO05D002151 9.2e-09 63.5 56 55.4
Nn4g26099 Nelumbo nucifera HOM05D002117 ORTHO05D002151 9.2e-09 63.5 49 61.2
PSO675G3263 Papaver somniferum HOM05D002117 ORTHO05D002151 9.2e-09 63.5 62 51.6
PSO732G0257 Papaver somniferum HOM05D002117 ORTHO05D002151 9.2e-09 63.5 62 51.6
Eucgr.K03420 Eucalyptus grandis HOM05D002117 ORTHO05D002151 1.2e-08 63.2 52 55.8
Aa31LG1G9150 Aethionema arabicum HOM05D002117 ORTHO05D002151 1.6e-08 62.8 53 56.6
Gohir.D12G006800 Gossypium hirsutum HOM05D002117 ORTHO05D002151 1.6e-08 62.8 54 57.4
Gorai.008G007000 Gossypium raimondii HOM05D002117 ORTHO05D002151 1.6e-08 62.8 54 57.4
PSO210G7183 Papaver somniferum HOM05D002117 ORTHO05D002151 1.6e-08 62.8 49 61.2
PSO832G2547 Papaver somniferum HOM05D002117 ORTHO05D002151 1.6e-08 62.8 49 61.2
Carub.0001s0257 Capsella rubella HOM05D002117 ORTHO05D002151 2.7e-08 62.0 50 60.0
CDE08G0274 Ceratophyllum demersum HOM05D002117 ORTHO05D002151 2.7e-08 62.0 82 42.7
Nn5g30649 Nelumbo nucifera HOM05D002117 ORTHO05D002151 2.7e-08 62.0 53 58.5
DCAR_012446 Daucus carota HOM05D002117 ORTHO05D002151 3.5e-08 61.6 53 52.8
ECA247G3670 Erigeron canadensis HOM05D002117 ORTHO05D002151 3.5e-08 61.6 53 56.6
HanXRQChr10g0283121 Helianthus annuus HOM05D002117 ORTHO05D002151 3.5e-08 61.6 56 57.1
Lj1C41T11 Lonicera japonica HOM05D002117 ORTHO05D002151 3.5e-08 61.6 50 60.0
Glyma.19G151800 Glycine max HOM05D002117 ORTHO05D002151 4.5e-08 61.2 53 54.7
TAR365G0704 Trochodendron aralioides HOM05D002117 ORTHO05D002151 4.5e-08 61.2 44 68.2
arahy.Tifrunner.gnm1.ann1.3J53SH Arachis hypogaea HOM05D002117 ORTHO05D002151 7.8e-08 60.5 49 57.1
arahy.Tifrunner.gnm1.ann1.KH9YDP Arachis hypogaea HOM05D002117 ORTHO05D002151 7.8e-08 60.5 49 57.1
Glyma.03G148500 Glycine max HOM05D002117 ORTHO05D002151 1.0e-07 60.1 50 56.0
Ca_08550_v3 Cicer arietinum L. HOM05D002117 ORTHO05D002151 1.3e-07 59.7 55 49.1
DCAR_005830 Daucus carota HOM05D002117 ORTHO05D002151 1.7e-07 59.3 50 54.0
Aqoxy5G00590 Aquilegia oxysepala HOM05D002117 ORTHO05D002151 2.9e-07 58.5 56 55.4
arahy.Tifrunner.gnm1.ann1.3L2DDP Arachis hypogaea HOM05D002117 ORTHO05D002151 2.9e-07 58.5 50 54.0
Lj1g0004302 Lotus japonicus HOM05D002117 ORTHO05D002151 2.9e-07 58.5 50 52.0
Eucgr.H01609 Eucalyptus grandis HOM05D002117 ORTHO05D002151 6.6e-07 57.4 49 57.1
HanXRQChr15g0466531 Helianthus annuus HOM05D002117 ORTHO05D002151 6.6e-07 57.4 50 56.0
HPP92_011801 Vanilla planifolia HOM05D002117 ORTHO05D002151 6.6e-07 57.4 56 51.8
Zm00001eb349640 Zea mays HOM05D002117 ORTHO05D002151 6.6e-07 57.4 50 60.0
ATR0487G005 Amborella trichopoda HOM05D002117 ORTHO05D002151 1.1e-06 56.6 77 44.2
Phvul.001G146600 Phaseolus vulgaris HOM05D002117 ORTHO05D002151 1.5e-06 56.2 50 54.0
SEGI_20469 Sequoiadendron giganteum HOM05D002117 ORTHO05D002151 1.9e-06 55.8 66 43.9
VMungo1383G1954 Vigna mungo HOM05D002117 ORTHO05D002151 4.3e-06 54.7 50 54.0
Os05g0406800 Oryza sativa ssp. japonica HOM05D002117 ORTHO05D002151 7.3e-06 53.9 50 56.0


User provided reference genes

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