Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 3.7e-219 764.6 395 100.0
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 1.5e-188 662.9 377 89.9
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 2.2e-187 659.1 391 86.2
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 6.4e-187 657.5 377 89.4
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 8.3e-187 657.1 376 89.6
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 2.4e-186 655.6 377 89.1
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 4.1e-186 654.8 391 86.7
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 7.0e-186 654.1 377 89.7
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 6.0e-185 651.0 377 89.7
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 7.8e-185 650.6 376 89.1
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 7.8e-185 650.6 391 85.4
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 1.3e-184 649.8 377 89.7
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 3.9e-184 648.3 377 88.9
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 8.6e-184 647.1 377 87.3
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.5e-183 645.6 377 87.0
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 4.3e-183 644.8 377 87.8
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 7.3e-183 644.0 377 87.8
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.6e-182 642.9 376 87.5
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 2.1e-182 642.5 391 85.4
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.1e-182 642.5 391 85.4
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.1e-182 642.5 391 85.4
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 2.1e-182 642.5 376 89.1
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 2.8e-182 642.1 391 84.4
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 4.7e-182 641.3 376 87.5
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.7e-182 641.3 376 88.6
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.7e-182 641.3 377 86.7
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.1e-181 640.2 376 88.3
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 4.0e-181 638.3 391 84.7
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 4.0e-181 638.3 377 87.3
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 5.2e-181 637.9 391 84.1
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 1.2e-180 636.7 376 88.0
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 1.5e-180 636.3 391 84.4
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.5e-180 636.3 377 87.3
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.5e-180 636.3 380 85.8
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 2.0e-180 636.0 391 84.7
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 2.0e-180 636.0 375 87.7
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 3.4e-180 635.2 377 86.7
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 4.4e-180 634.8 376 87.8
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 4.4e-180 634.8 391 84.4
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 9.9e-180 633.6 377 86.2
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 4.9e-179 631.3 377 86.2
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 4.9e-179 631.3 377 86.2
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 8.3e-179 630.6 395 82.0
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.4e-178 629.8 376 86.2
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 3.2e-178 628.6 391 82.4
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 4.1e-178 628.2 377 84.9
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 5.4e-178 627.9 377 85.4
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 7.1e-178 627.5 377 85.7
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 1.2e-177 626.7 377 86.2
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 1.2e-177 626.7 376 86.2
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 1.2e-177 626.7 391 82.6
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 1.6e-177 626.3 378 85.4
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 2.7e-177 625.5 391 80.3
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 4.6e-177 624.8 376 86.7
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 6.0e-177 624.4 391 81.8
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.0e-176 623.6 391 82.6
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 1.0e-176 623.6 391 83.4
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 1.0e-176 623.6 376 86.4
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.7e-176 622.9 377 86.2
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 3.9e-176 621.7 391 80.8
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 6.6e-176 620.9 376 84.0
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 6.6e-176 620.9 391 81.1
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 9.5e-175 617.1 377 85.1
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.2e-174 616.7 391 81.3
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 6.2e-174 614.4 391 79.8
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 1.1e-173 613.6 376 82.7
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.4e-173 613.2 376 83.0
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 5.2e-173 611.3 391 80.6
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 5.2e-173 611.3 377 84.6
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 5.2e-173 611.3 376 83.5
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 2.6e-172 609.0 418 77.3
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 3.4e-172 608.6 376 82.2
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 3.4e-172 608.6 376 82.2
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 3.4e-172 608.6 377 82.0
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 3.4e-172 608.6 376 83.2
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 7.6e-172 607.4 376 83.0
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 7.6e-172 607.4 442 73.5
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 2.2e-171 605.9 376 82.4
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 8.4e-171 604.0 376 81.9
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 8.4e-171 604.0 376 81.4
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 1.1e-170 603.6 391 78.5
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 1.9e-170 602.8 463 71.5
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 3.2e-170 602.1 377 82.2
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 3.2e-170 602.1 376 81.9
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 7.1e-170 600.9 391 80.3
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.6e-169 599.7 391 80.1
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 2.7e-169 599.0 391 78.5
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 4.6e-169 598.2 391 78.5
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 6.0e-169 597.8 377 83.0
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.3e-168 596.7 391 79.3
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 1.9e-167 592.8 391 78.8
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.3e-167 591.7 391 78.8
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 1.2e-166 590.1 394 79.9
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 4.7e-166 588.2 391 78.8
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 8.1e-166 587.4 382 80.9
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 8.1e-166 587.4 382 80.9
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 9.0e-165 583.9 377 80.1
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 9.9e-164 580.5 388 80.4
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 3.2e-162 575.5 376 77.7
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 9.3e-162 573.9 377 80.6
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 1.2e-161 573.5 382 77.7
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 3.9e-160 568.5 377 76.1
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 2.1e-158 562.8 376 79.5
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 5.3e-157 558.1 376 79.0
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 1.5e-156 556.6 379 77.6
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 4.9e-155 551.6 377 75.3
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 5.4e-154 548.1 376 75.0
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 1.2e-153 547.0 376 75.0
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 1.5e-151 540.0 393 71.5
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 8.1e-150 534.3 401 72.6
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 2.9e-147 525.8 388 75.3
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 2.9e-147 525.8 491 62.5
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 1.4e-146 523.5 378 68.3
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 4.6e-145 518.5 344 76.2
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 1.8e-144 516.5 359 77.2
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 3.8e-139 498.8 391 66.0
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 2.5e-138 496.1 509 57.4
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 5.0e-131 471.9 391 68.0
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 1.1e-130 470.7 378 66.1
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 3.3e-127 459.1 312 76.0
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.8e-125 453.4 409 63.3
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 2.0e-116 423.3 340 63.8
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 3.8e-107 392.5 423 50.8
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 6.7e-104 381.7 388 60.6
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 1.8e-96 357.1 214 82.2
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 8.8e-96 354.8 375 55.7
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 7.5e-87 325.1 414 50.5
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 7.0e-85 318.5 210 78.1
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 5.4e-77 292.4 489 38.2
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 1.3e-59 234.6 168 71.4
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 2.5e-58 230.3 411 37.2
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 1.7e-54 217.6 141 82.3
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 7.3e-50 202.2 277 49.5
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 9.6e-50 201.8 126 87.3
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 6.2e-49 199.1 126 86.5
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 4.0e-48 196.4 126 84.9
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 2.6e-47 193.7 130 76.2
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 2.6e-47 193.7 126 85.7
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 9.9e-47 191.8 126 83.3
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 1.3e-43 181.4 111 87.4
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 1.3e-38 164.9 104 88.5
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 8.4e-30 135.6 373 29.0
Gohir.D08G133700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.1e-26 125.2 104 65.4
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 3.3e-26 123.6 76 86.8
Gorai.004G136800 Gossypium raimondii HOM05D003653 ORTHO05D004249 9.6e-26 122.1 104 64.4
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.1e-24 118.6 82 80.5
RcHm_v2.0_Chr2g0096141 Rosa chinensis HOM05D003653 ORTHO05D004249 1.8e-24 117.9 61 90.2
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 1.7e-22 111.3 83 77.1
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 2.5e-21 107.5 76 75.0
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 2.3e-19 100.9 50 94.0
Haze_16164 Corylus avellana HOM05D003653 ORTHO05D004249 3.9e-19 100.1 63 79.4
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 3.9e-19 100.1 96 63.5
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 3.3e-18 97.1 75 70.7
Lsat_1_v5_gn_6_63001 Lactuca sativa HOM05D003653 ORTHO05D004249 1.1e-16 92.0 50 92.0
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 6.9e-16 89.4 94 59.6
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.2e-13 80.1 61 72.1
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 9.7e-10 68.9 94 43.6
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 1.3e-09 68.6 167 34.1
CSS0022852 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 4.1e-08 63.5 32 90.6
Lsat_1_v5_gn_2_35921 Lactuca sativa HOM05D003653 ORTHO05D004249 4.1e-08 63.5 41 80.5
CSS0016412 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 6.9e-08 62.8 34 82.4
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 9.1e-08 62.4 61 57.4
SEGI_20750 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.0e-06 58.9 54 53.7
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 8.5e-06 55.8 66 50.0


User provided reference genes

Program Settings