Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc82.3 Carica papaya HOM05D000134 ORTHO05D003318 3.7e-25 117.5 62 100.0
GSVIVG01020728001 Vitis vinifera HOM05D000134 ORTHO05D003318 1.7e-14 82.0 53 79.2
TWI23G0057 Tripterygium wilfordii HOM05D000134 ORTHO05D003318 4.3e-13 77.4 51 78.4
Ciclev10015515m.g Citrus clementina HOM05D000134 ORTHO05D003318 7.3e-13 76.6 53 75.5
Hma1.2p1_0178F.1_g078660 Hydrangea macrophylla HOM05D000134 ORTHO05D003318 7.3e-13 76.6 53 79.2
Thhalv10006022m.g Eutrema salsugineum HOM05D000134 ORTHO05D003318 9.5e-13 76.3 51 80.4
BcaC07g40286 Brassica carinata HOM05D000134 ORTHO05D003318 1.2e-12 75.9 51 80.4
C08p34010 Brassica napus HOM05D000134 ORTHO05D003318 1.2e-12 75.9 51 80.4
Aa31LG10G13300 Aethionema arabicum HOM05D000134 ORTHO05D003318 2.8e-12 74.7 51 76.5
CiPaw.04G134000 Carya illinoinensis HOM05D000134 ORTHO05D003318 2.8e-12 74.7 51 74.5
Prupe.3G115500 Prunus persica HOM05D000134 ORTHO05D003318 2.8e-12 74.7 51 78.4
BcaB02g07510 Brassica carinata HOM05D000134 ORTHO05D003318 6.2e-12 73.6 48 81.2
BcaC07g40217 Brassica carinata HOM05D000134 ORTHO05D003318 6.2e-12 73.6 48 81.2
FAN14G5880 Fragaria x ananassa HOM05D000134 ORTHO05D003318 6.2e-12 73.6 51 76.5
RcHm_v2.0_Chr2g0130301 Rosa chinensis HOM05D000134 ORTHO05D003318 6.2e-12 73.6 51 76.5
AL5G40460 Arabidopsis lyrata HOM05D000134 ORTHO05D003318 8.1e-12 73.2 46 82.6
AT3G58690 Arabidopsis thaliana HOM05D000134 ORTHO05D003318 8.1e-12 73.2 46 82.6
Carub.0005s2548 Capsella rubella HOM05D000134 ORTHO05D003318 8.1e-12 73.2 46 82.6
FvH4_6g27620 Fragaria vesca HOM05D000134 ORTHO05D003318 1.1e-11 72.8 51 76.5
FAN05G3266 Fragaria x ananassa HOM05D000134 ORTHO05D003318 1.1e-11 72.8 51 76.5
MD17G1265400 Malus domestica HOM05D000134 ORTHO05D003318 1.1e-11 72.8 51 70.6
Sp5g04160 Schrenkiella parvula HOM05D000134 ORTHO05D003318 1.4e-11 72.4 51 76.5
A07p24280 Brassica napus HOM05D000134 ORTHO05D003318 2.3e-11 71.6 48 79.2
MELO3C004977.2 Cucumis melo HOM05D000134 ORTHO05D003318 2.3e-11 71.6 51 74.5
BcaC08g44938 Brassica carinata HOM05D001556 ORTHO05D003318 3.1e-11 71.2 45 82.2
A09p51220 Brassica napus HOM05D000134 ORTHO05D003318 3.1e-11 71.2 52 78.8
C06p25650 Brassica napus HOM05D000134 ORTHO05D003318 3.1e-11 71.2 45 82.2
BolC6t37728H Brassica oleracea HOM05D000134 ORTHO05D003318 3.1e-11 71.2 45 82.2
BraA09t40565Z Brassica rapa HOM05D000134 ORTHO05D003318 3.1e-11 71.2 52 78.8
Eucgr.K01143 Eucalyptus grandis HOM05D000134 ORTHO05D003318 3.1e-11 71.2 49 77.6
FAN02G4023 Fragaria x ananassa HOM05D000134 ORTHO05D003318 3.1e-11 71.2 51 72.5
BraA07t30071Z Brassica rapa HOM05D000134 ORTHO05D003318 5.2e-11 70.5 46 80.4
Dinv07681 Davidia involucrata HOM05D000134 ORTHO05D003318 5.2e-11 70.5 53 73.6
Sed0022674 Sechium edule HOM05D000134 ORTHO05D003318 5.2e-11 70.5 48 79.2
Atru.chr6.2770 Acer truncatum HOM05D000134 ORTHO05D003318 6.8e-11 70.1 53 69.8
PGR142G2175 Punica granatum HOM05D000134 ORTHO05D003318 8.9e-11 69.7 47 80.9
Sc21g0004120 Simmondsia chinensis HOM05D000134 ORTHO05D003318 8.9e-11 69.7 53 64.2
Thecc.01G152900 Theobroma cacao HOM05D000134 ORTHO05D003318 1.5e-10 68.9 51 74.5
Cc05_g08470 Coffea canephora HOM05D000134 ORTHO05D003318 2.6e-10 68.2 55 70.9
FAN09G1193 Fragaria x ananassa HOM05D000134 ORTHO05D003318 2.6e-10 68.2 51 74.5
Actinidia03639 Actinidia chinensis HOM05D000134 ORTHO05D003318 4.4e-10 67.4 51 64.7
EL10Ac9g20966 Beta vulgaris HOM05D000134 ORTHO05D003318 4.4e-10 67.4 53 64.2
COL.COLO4_33601 Corchorus olitorius HOM05D000134 ORTHO05D003318 4.4e-10 67.4 48 77.1
Gohir.A10G154400 Gossypium hirsutum HOM05D000134 ORTHO05D003318 4.4e-10 67.4 48 77.1
Gohir.D10G111600 Gossypium hirsutum HOM05D000134 ORTHO05D003318 4.4e-10 67.4 48 77.1
Gorai.011G123200 Gossypium raimondii HOM05D000134 ORTHO05D003318 4.4e-10 67.4 48 77.1
AUR62024055 Chenopodium quinoa HOM05D000134 ORTHO05D003318 5.8e-10 67.0 59 52.5
Manes.01G132200 Manihot esculenta HOM05D000134 ORTHO05D003318 7.5e-10 66.6 52 73.1
Phvul.005G094300 Phaseolus vulgaris HOM05D000134 ORTHO05D003318 1.3e-09 65.9 59 55.9
Potri.014G143100 Populus trichocarpa HOM05D000134 ORTHO05D003318 2.2e-09 65.1 50 72.0
Solyc07g055180.3 Solanum lycopersicum HOM05D000134 ORTHO05D003318 2.9e-09 64.7 51 68.6
Sopen07g027050 Solanum pennellii HOM05D000134 ORTHO05D003318 2.9e-09 64.7 51 68.6
PGSC0003DMG400020438 Solanum tuberosum HOM05D000134 ORTHO05D003318 2.9e-09 64.7 51 68.6
TAR486G0004 Trochodendron aralioides HOM05D000085 ORTHO05D003318 2.9e-09 64.7 52 67.3
TAR626G1051 Trochodendron aralioides HOM05D000134 ORTHO05D003318 2.9e-09 64.7 52 67.3
Rhsim04G0075100 Rhododendron simsii HOM05D000134 ORTHO05D003318 4.9e-09 63.9 51 62.7
Actinidia00861 Actinidia chinensis HOM05D000134 ORTHO05D003318 6.4e-09 63.5 51 64.7
AUR62041729 Chenopodium quinoa HOM05D000134 ORTHO05D003318 6.4e-09 63.5 53 56.6
Glyma.12G211800 Glycine max HOM05D000134 ORTHO05D003318 6.4e-09 63.5 59 55.9
Nitab4.5_0000249g0210 Nicotiana tabacum HOM05D000134 ORTHO05D003318 1.1e-08 62.8 50 66.0
vmacro09208 Vaccinium macrocarpon HOM05D000134 ORTHO05D003318 1.9e-08 62.0 50 62.0
Glyma.13G289900 Glycine max HOM05D000134 ORTHO05D003318 2.4e-08 61.6 59 54.2
Nitab4.5_0004409g0010 Nicotiana tabacum HOM05D000134 ORTHO05D003318 3.2e-08 61.2 51 62.7
Nn1g04483 Nelumbo nucifera HOM05D000134 ORTHO05D003318 4.1e-08 60.8 51 62.7
Peaxi162Scf00469g00525 Petunia axillaris HOM05D000134 ORTHO05D003318 5.4e-08 60.5 47 61.7
Lj8C100T14 Lonicera japonica HOM05D000134 ORTHO05D003318 7.1e-08 60.1 54 61.1
Sabra14G0108100 Salix brachista HOM05D000134 ORTHO05D003318 9.2e-08 59.7 47 72.3
Duzib264G0832 Durio zibethinus HOM05D000134 ORTHO05D003318 1.2e-07 59.3 55 67.3
Hund07774 Selenicereus undatus HOM05D000134 ORTHO05D003318 1.6e-07 58.9 53 52.8
SGA_v2.0_scaffold76G25131 Striga asiatica HOM05D000085 ORTHO05D003318 2.1e-07 58.5 52 53.8
SGA_v2.0_scaffold9G04841 Striga asiatica HOM05D000134 ORTHO05D003318 2.1e-07 58.5 52 53.8
Lalb_Chr22g0356981 Lupinus albus HOM05D000134 ORTHO05D003318 2.7e-07 58.2 56 55.4
Lj3g0027553 Lotus japonicus HOM05D000134 ORTHO05D003318 3.5e-07 57.8 53 62.3
CSS0024179 Camellia sinensis var. sinensis HOM05D000134 ORTHO05D003318 4.6e-07 57.4 54 61.1
CAN.G1081.6 Capsicum annuum HOM05D000134 ORTHO05D003318 7.8e-07 56.6 46 60.9
ClCG07G002710 Citrullus lanatus HOM05D000085 ORTHO05D003318 1.0e-06 56.2 51 62.7
Ca_01863_v3 Cicer arietinum L. HOM05D000134 ORTHO05D003318 1.7e-06 55.5 59 47.5
QL08p042199 Quercus lobata HOM05D000134 ORTHO05D003318 3.9e-06 54.3 43 65.1
Migut.M00273 Erythranthe guttata HOM05D000134 ORTHO05D003318 8.6e-06 53.1 50 52.0


User provided reference genes

Program Settings