Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc81.2 Carica papaya HOM05D005409 ORTHO05D006456 5.1e-310 1067.0 576 100.0
Thecc.06G207400 Theobroma cacao HOM05D005409 ORTHO05D006456 2.0e-136 490.3 439 62.9
Duzib235G0390 Durio zibethinus HOM05D005409 ORTHO05D006456 9.1e-134 481.5 439 60.1
Duzib192G0995 Durio zibethinus HOM05D005409 ORTHO05D006456 1.6e-133 480.7 440 59.8
COL.COLO4_33645 Corchorus olitorius HOM05D005409 ORTHO05D006456 5.0e-132 475.7 439 61.0
Gorai.006G084700 Gossypium raimondii HOM05D005409 ORTHO05D006456 2.5e-131 473.4 439 58.1
Gohir.D09G070300 Gossypium hirsutum HOM05D005409 ORTHO05D006456 2.7e-130 469.9 439 57.9
Gohir.A09G070200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 7.0e-126 455.3 439 57.2
Ciclev10014614m.g Citrus clementina HOM05D005409 ORTHO05D006456 4.2e-123 446.0 435 55.9
Gohir.D10G017400 Gossypium hirsutum HOM05D005409 ORTHO05D006456 1.5e-120 437.6 438 57.3
Gorai.011G019300 Gossypium raimondii HOM05D005409 ORTHO05D006456 1.5e-120 437.6 438 57.3
Haze_06671 Corylus avellana HOM05D005409 ORTHO05D006456 1.3e-119 434.5 452 55.8
Manes.17G030300 Manihot esculenta HOM05D005409 ORTHO05D006456 6.3e-119 432.2 433 54.3
Prupe.4G030000 Prunus persica HOM05D005409 ORTHO05D006456 1.8e-118 430.6 438 55.7
Cfa016400 Carpinus fangiana HOM05D005409 ORTHO05D006456 4.1e-118 429.5 442 56.3
QL05p077347 Quercus lobata HOM05D005409 ORTHO05D006456 3.5e-117 426.4 442 56.3
Dinv18952 Davidia involucrata HOM05D005409 ORTHO05D006456 3.9e-116 422.9 465 53.1
Gohir.A10G017200 Gossypium hirsutum HOM05D005409 ORTHO05D006456 5.0e-116 422.5 436 55.7
MD05G1335400 Malus domestica HOM05D005409 ORTHO05D006456 1.5e-115 421.0 438 54.8
CiPaw.10G113200 Carya illinoinensis HOM05D005409 ORTHO05D006456 2.5e-115 420.2 436 55.5
TWI63G1109 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 7.3e-115 418.7 437 54.0
CiPaw.10G113100 Carya illinoinensis HOM05D005409 ORTHO05D006456 2.8e-114 416.8 436 55.0
TAR624G1144 Trochodendron aralioides HOM05D005409 ORTHO05D006456 2.9e-111 406.8 442 53.6
MD10G1310800 Malus domestica HOM05D005409 ORTHO05D006456 8.3e-111 405.2 443 53.5
FAN25G1204 Fragaria x ananassa HOM05D005409 ORTHO05D006456 1.1e-110 404.8 462 52.2
CANSAT35G0463 Cannabis sativa HOM05D005409 ORTHO05D006456 1.9e-107 394.0 440 53.4
Eucgr.E03596 Eucalyptus grandis HOM05D005409 ORTHO05D006456 7.3e-107 392.1 436 53.0
FvH4_3g03030 Fragaria vesca HOM05D005409 ORTHO05D006456 1.1e-105 388.3 463 50.8
MELO3C002515.2 Cucumis melo HOM05D005409 ORTHO05D006456 2.6e-104 383.6 443 52.8
Lj4g0002185 Lotus japonicus HOM05D005409 ORTHO05D006456 8.3e-103 378.6 445 51.0
Sc17g0006920 Simmondsia chinensis HOM05D005409 ORTHO05D006456 3.2e-102 376.7 436 49.1
Nn1g06923 Nelumbo nucifera HOM05D005409 ORTHO05D006456 5.4e-102 375.9 440 51.4
CsaV3_1G011380 Cucumis sativus L. HOM05D005409 ORTHO05D006456 2.7e-101 373.6 443 51.0
Sed0006411 Sechium edule HOM05D005409 ORTHO05D006456 3.5e-101 373.2 457 49.9
TAR626G0140 Trochodendron aralioides HOM05D005409 ORTHO05D006456 6.0e-101 372.5 440 50.9
Potri.011G031900 Populus trichocarpa HOM05D005409 ORTHO05D006456 1.7e-100 370.9 438 50.0
Phvul.002G218900 Phaseolus vulgaris HOM05D005409 ORTHO05D006456 6.6e-100 369.0 441 50.3
ClCG03G005190 Citrullus lanatus HOM05D005409 ORTHO05D006456 3.3e-99 366.7 442 51.8
VMungo0251G1750 Vigna mungo HOM05D005409 ORTHO05D006456 5.6e-99 365.9 450 49.6
Glyma.07G187300 Glycine max HOM05D005409 ORTHO05D006456 2.3e-97 360.5 441 49.0
Sabra11G0025100 Salix brachista HOM05D005409 ORTHO05D006456 6.8e-97 359.0 436 48.2
Glyma.08G061800 Glycine max HOM05D005409 ORTHO05D006456 8.9e-97 358.6 442 48.9
Ca_18454_v3 Cicer arietinum L. HOM05D005409 ORTHO05D006456 5.8e-96 355.9 446 49.3
Hma1.2p1_0809F.1_g221760 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 7.6e-96 355.5 453 49.9
Hma1.2p1_0809F.1_g221770 Hydrangea macrophylla HOM05D005409 ORTHO05D006456 7.6e-96 355.5 453 49.9
Sopen02g024640 Solanum pennellii HOM05D005409 ORTHO05D006456 1.1e-94 351.7 449 48.1
Hund23539 Selenicereus undatus HOM05D005409 ORTHO05D006456 1.4e-94 351.3 447 48.1
Lalb_Chr09g0327161 Lupinus albus HOM05D005409 ORTHO05D006456 1.9e-94 350.9 439 50.6
PGSC0003DMG400021722 Solanum tuberosum HOM05D005409 ORTHO05D006456 7.1e-94 349.0 449 47.7
Solyc02g079880.3 Solanum lycopersicum HOM05D005409 ORTHO05D006456 4.6e-93 346.3 449 48.1
Nitab4.5_0000503g0080 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.0e-92 345.1 456 47.6
Actinidia11830 Actinidia chinensis HOM05D005409 ORTHO05D006456 3.9e-92 343.2 464 47.0
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 6.6e-92 342.4 443 47.9
Nitab4.5_0006456g0010 Nicotiana tabacum HOM05D005409 ORTHO05D006456 1.1e-91 341.7 456 46.5
Cc02_g11840 Coffea canephora HOM05D005409 ORTHO05D006456 3.1e-89 333.6 455 45.1
Sabra11G0019200 Salix brachista HOM05D005409 ORTHO05D006456 1.9e-86 324.3 438 46.1
Oeu016146.1 Olea europaea HOM05D005409 ORTHO05D006456 1.6e-85 321.2 453 45.5
Lalb_Chr16g0383301 Lupinus albus HOM05D005409 ORTHO05D006456 6.0e-85 319.3 440 46.6
Peaxi162Scf00759g00211 Petunia axillaris HOM05D005409 ORTHO05D006456 1.0e-84 318.5 454 45.6
PGR042G2399 Punica granatum HOM05D005409 ORTHO05D006456 5.1e-84 316.2 378 52.1
PSO675G2591 Papaver somniferum HOM05D005409 ORTHO05D006456 2.5e-83 313.9 447 47.4
THA.LOC104818924 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 3.3e-83 313.5 437 46.9
Lj2A276T57 Lonicera japonica HOM05D005409 ORTHO05D006456 4.3e-83 313.2 450 45.6
PSO541G2946 Papaver somniferum HOM05D005409 ORTHO05D006456 2.1e-82 310.8 446 46.4
THA.LOC104809524 Tarenaya hassleriana HOM05D005409 ORTHO05D006456 6.2e-82 309.3 436 47.5
TPR.G13934 Trifolium pratense HOM05D005409 ORTHO05D006456 1.1e-81 308.5 442 46.8
SalBow8G4343 Salvia bowleyana HOM05D005409 ORTHO05D006456 1.4e-81 308.1 462 43.5
Oeu050809.4 Olea europaea HOM05D005409 ORTHO05D006456 2.4e-81 307.4 436 44.3
EL10As6g23684 Beta vulgaris HOM05D005409 ORTHO05D006456 3.1e-81 307.0 448 45.1
Medtr4g092050 Medicago truncatula HOM05D005409 ORTHO05D006456 6.9e-81 305.8 439 45.8
CARHR011750 Cardamine hirsuta HOM05D005409 ORTHO05D006456 4.4e-80 303.1 439 46.2
Sp1g10100 Schrenkiella parvula HOM05D005409 ORTHO05D006456 2.2e-79 300.8 439 45.1
CSS0017238 Camellia sinensis var. sinensis HOM05D005409 ORTHO05D006456 2.9e-79 300.4 433 45.0
AUR62012574 Chenopodium quinoa HOM05D005409 ORTHO05D006456 2.9e-79 300.4 447 45.2
Rhsim02G0115600 Rhododendron simsii HOM05D005409 ORTHO05D006456 2.9e-79 300.4 488 43.6
MSTRG.15953 Avicennia marina HOM05D005409 ORTHO05D006456 8.4e-79 298.9 457 44.6
ECA236G3644 Erigeron canadensis HOM05D005409 ORTHO05D006456 1.1e-78 298.5 447 44.3
Lj1A1221T57 Lonicera japonica HOM05D005409 ORTHO05D006456 1.1e-78 298.5 444 45.9
MBI02_g26225_MAGBIO Magnolia biondii HOM05D005409 ORTHO05D006456 7.1e-78 295.8 447 44.5
Actinidia26959 Actinidia chinensis HOM05D005409 ORTHO05D006456 1.2e-77 295.0 461 45.8
TWI38G0167 Tripterygium wilfordii HOM05D005409 ORTHO05D006456 3.5e-77 293.5 381 49.1
Carub.0001s1109 Capsella rubella HOM05D005409 ORTHO05D006456 6.0e-77 292.7 439 44.0
AUR62014626 Chenopodium quinoa HOM05D005409 ORTHO05D006456 6.0e-77 292.7 447 44.5
BcaNung07116 Brassica carinata HOM05D005409 ORTHO05D006456 2.3e-76 290.8 439 45.1
GSVIVG01006401001 Vitis vinifera HOM05D005409 ORTHO05D006456 1.1e-75 288.5 460 41.5
Thhalv10007161m.g Eutrema salsugineum HOM05D005409 ORTHO05D006456 1.9e-75 287.7 439 45.3
AT1G11480 Arabidopsis thaliana HOM05D005409 ORTHO05D006456 1.3e-74 285.0 439 44.0
C05p09680 Brassica napus HOM05D005409 ORTHO05D006456 1.3e-74 285.0 440 44.8
BolC5t29709H Brassica oleracea HOM05D005409 ORTHO05D006456 1.3e-74 285.0 440 44.8
Oeu050499.1 Olea europaea HOM05D005409 ORTHO05D006456 2.8e-74 283.9 440 43.0
A06p08100 Brassica napus HOM05D005409 ORTHO05D006456 3.6e-74 283.5 440 44.8
Ah.14g088510 Amaranthus hybridus HOM05D005409 ORTHO05D006456 1.1e-73 282.0 454 44.1
Aa31LG1G3270 Aethionema arabicum HOM05D005409 ORTHO05D006456 1.4e-73 281.6 436 44.5
Aqoxy1G03830 Aquilegia oxysepala HOM05D005409 ORTHO05D006456 1.4e-73 281.6 479 42.4
BcaC05g25024 Brassica carinata HOM05D005409 ORTHO05D006456 1.4e-73 281.6 440 44.1
BraA06t24009Z Brassica rapa HOM05D005409 ORTHO05D006456 4.9e-71 273.1 440 44.3
vmacro15844 Vaccinium macrocarpon HOM05D005409 ORTHO05D006456 7.1e-70 269.2 439 42.8
CDE12G0800 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 2.1e-69 267.7 441 43.3
HanXRQChr15g0482781 Helianthus annuus HOM05D005409 ORTHO05D006456 3.5e-69 266.9 458 42.1
GSVIVG01030650001 Vitis vinifera HOM05D005409 ORTHO05D006456 6.0e-69 266.2 439 43.1
DCAR_008109 Daucus carota HOM05D005409 ORTHO05D006456 1.3e-68 265.0 444 41.0
AL1G22590 Arabidopsis lyrata HOM05D005409 ORTHO05D006456 2.3e-68 264.2 436 42.9
HanXRQChr15g0482771 Helianthus annuus HOM05D005409 ORTHO05D006456 1.4e-65 255.0 457 40.7
Migut.M01258 Erythranthe guttata HOM05D005409 ORTHO05D006456 6.9e-65 252.7 450 40.4
Lsat_1_v5_gn_7_18380 Lactuca sativa HOM05D005409 ORTHO05D006456 6.9e-65 252.7 444 40.5
SGA_v2.0_scaffold7G03896 Striga asiatica HOM05D005409 ORTHO05D006456 6.5e-63 246.1 455 40.0
Potri.017G041300 Populus trichocarpa HOM05D005409 ORTHO05D006456 6.7e-60 236.1 443 41.5
CDE01G0308 Ceratophyllum demersum HOM05D005409 ORTHO05D006456 1.5e-59 235.0 434 39.2
Sabra07G0096100 Salix brachista HOM05D005409 ORTHO05D006456 1.5e-59 235.0 447 41.2
Sabra17G0028000 Salix brachista HOM05D005409 ORTHO05D006456 9.6e-59 232.3 491 37.5
Potri.007G119200 Populus trichocarpa HOM05D005409 ORTHO05D006456 2.1e-58 231.1 454 40.1
DCAR_004174 Daucus carota HOM05D005409 ORTHO05D006456 1.1e-57 228.8 424 38.9
Actinidia26760 Actinidia chinensis HOM05D005409 ORTHO05D006456 2.6e-56 224.2 346 43.6
Atru.chr6.3116 Acer truncatum HOM05D005409 ORTHO05D006456 6.5e-55 219.5 453 39.3
ATR0804G077 Amborella trichopoda HOM05D005409 ORTHO05D006456 1.3e-52 211.8 518 37.5
arahy.Tifrunner.gnm1.ann1.XK38U2 Arachis hypogaea HOM05D005409 ORTHO05D006456 2.3e-52 211.1 442 38.9
arahy.Tifrunner.gnm1.ann1.QZ9QK3 Arachis hypogaea HOM05D005409 ORTHO05D006456 8.7e-52 209.1 442 39.6
Atru.chr10.2047 Acer truncatum HOM05D005409 ORTHO05D006456 1.9e-51 208.0 251 49.4
Actinidia24044 Actinidia chinensis HOM05D005409 ORTHO05D006456 5.7e-51 206.5 290 44.8
GSVIVG01006635001 Vitis vinifera HOM05D005409 ORTHO05D006456 6.3e-50 203.0 165 61.2
RcHm_v2.0_Chr5g0004671 Rosa chinensis HOM05D005409 ORTHO05D006456 3.1e-49 200.7 145 69.7
RcHm_v2.0_Chr5g0004681 Rosa chinensis HOM05D005409 ORTHO05D006456 4.1e-49 200.3 270 45.6
HPP92_000870 Vanilla planifolia HOM05D005409 ORTHO05D006456 5.5e-46 189.9 458 36.5
Ah.09g237100 Amaranthus hybridus HOM05D000067 ORTHO05D006456 6.7e-36 156.4 347 36.6
Os07g0546100 Oryza sativa ssp. japonica HOM05D005409 ORTHO05D006456 4.8e-26 123.6 443 30.9
Atru.chr10.2048 Acer truncatum HOM05D005409 ORTHO05D006456 8.2e-26 122.9 158 44.9
Zm00001eb323520 Zea mays HOM05D005409 ORTHO05D006456 5.5e-22 110.2 441 31.3
Mapoly0113s0049 Marchantia polymorpha HOM05D005409 ORTHO05D006456 4.0e-20 104.0 138 47.1
Zm00001eb106500 Zea mays HOM05D005409 ORTHO05D006456 6.8e-20 103.2 423 30.0
SMO118G0050 Selaginella moellendorffii HOM05D005409 ORTHO05D006456 3.4e-19 100.9 556 26.6
Pp3c20_3440 Physcomitrium patens HOM05D005409 ORTHO05D006456 4.8e-18 97.1 349 32.4
QL05p012359 Quercus lobata HOM05D005409 ORTHO05D006456 1.4e-17 95.5 132 46.2
AagrBONN_evm.TU.Sc2ySwM_228.455 Anthoceros agrestis HOM05D005409 ORTHO05D006456 4.5e-16 90.5 121 47.9
CBR_g36658 Chara braunii HOM05D005409 ORTHO05D006456 1.0e-12 79.3 116 44.8


User provided reference genes

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