Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc81.142 Carica papaya HOM05D007750 ORTHO05D009803 1.8e-102 377.5 193 100.0
Gohir.D03G125600 Gossypium hirsutum HOM05D007750 ORTHO05D009803 4.1e-62 243.4 193 62.2
Gohir.A03G042099 Gossypium hirsutum HOM05D007750 ORTHO05D009803 1.6e-61 241.5 193 61.7
Gorai.003G131800 Gossypium raimondii HOM05D007750 ORTHO05D009803 1.6e-61 241.5 193 61.7
CiPaw.13G094000 Carya illinoinensis HOM05D007750 ORTHO05D009803 7.8e-61 239.2 193 64.8
QL01p031803 Quercus lobata HOM05D007750 ORTHO05D009803 3.0e-60 237.3 193 64.2
Haze_24099 Corylus avellana HOM05D007750 ORTHO05D009803 7.3e-59 232.6 193 63.2
Duzib150G0757 Durio zibethinus HOM05D007750 ORTHO05D009803 9.6e-59 232.3 193 59.6
TAR623G1496 Trochodendron aralioides HOM05D007750 ORTHO05D009803 9.6e-59 232.3 194 61.9
Cfa011507 Carpinus fangiana HOM05D007750 ORTHO05D009803 2.0e-56 224.6 193 61.7
GSVIVG01024955001 Vitis vinifera HOM05D007750 ORTHO05D009803 3.4e-56 223.8 193 59.6
Manes.02G132900 Manihot esculenta HOM05D007750 ORTHO05D009803 1.7e-55 221.5 190 60.5
Thecc.09G321000 Theobroma cacao HOM05D007750 ORTHO05D009803 1.7e-55 221.5 193 57.5
Prupe.6G076800 Prunus persica HOM05D007750 ORTHO05D009803 2.9e-55 220.7 193 59.6
Atru.chr3.3911 Acer truncatum HOM05D007750 ORTHO05D009803 4.9e-55 219.9 194 58.2
CSS0037746 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.4e-54 218.4 194 59.3
RcHm_v2.0_Chr5g0064911 Rosa chinensis HOM05D007750 ORTHO05D009803 1.0e-52 212.2 193 57.5
CSS0028051 Camellia sinensis var. sinensis HOM05D007750 ORTHO05D009803 1.9e-51 208.0 184 59.8
Thhalv10028537m.g Eutrema salsugineum HOM05D007750 ORTHO05D009803 3.3e-51 207.2 193 53.4
THA.LOC104801704 Tarenaya hassleriana HOM05D007750 ORTHO05D009803 4.8e-50 203.4 193 54.9
Carub.0006s3078 Capsella rubella HOM05D007750 ORTHO05D009803 6.2e-50 203.0 193 51.8
CANSAT54G1947 Cannabis sativa HOM05D007750 ORTHO05D009803 1.1e-49 202.2 193 55.4
TPR.G7494 Trifolium pratense HOM05D007750 ORTHO05D009803 1.1e-49 202.2 193 57.0
Ca_04398_v3 Cicer arietinum L. HOM05D007750 ORTHO05D009803 2.4e-49 201.1 193 56.0
RcHm_v2.0_Chr5g0064671 Rosa chinensis HOM05D007750 ORTHO05D009803 4.0e-49 200.3 193 54.9
Aa31LG9G10670 Aethionema arabicum HOM05D007750 ORTHO05D009803 9.0e-49 199.1 193 51.8
Aqoxy496s001 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 9.0e-49 199.1 193 55.4
Aqoxy4G02931 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 9.0e-49 199.1 193 55.4
Nn1g04208 Nelumbo nucifera HOM05D007750 ORTHO05D009803 9.0e-49 199.1 195 55.4
BraA09t38312Z Brassica rapa HOM05D007750 ORTHO05D009803 1.2e-48 198.7 193 52.8
FAN16G0393 Fragaria x ananassa HOM05D007750 ORTHO05D009803 2.0e-48 198.0 193 52.8
Aqoxy7G03815 Aquilegia oxysepala HOM05D007750 ORTHO05D009803 4.5e-48 196.8 193 54.4
FAN25G2068 Fragaria x ananassa HOM05D007750 ORTHO05D009803 4.5e-48 196.8 193 52.3
MD03G1092900 Malus domestica HOM05D007750 ORTHO05D009803 7.6e-48 196.1 193 52.8
CARHR254670 Cardamine hirsuta HOM05D007750 ORTHO05D009803 9.9e-48 195.7 193 50.8
FvH4_3g36170 Fragaria vesca HOM05D007750 ORTHO05D009803 9.9e-48 195.7 193 52.8
FAN11G0214 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.3e-47 195.3 193 52.8
FAN21G3841 Fragaria x ananassa HOM05D007750 ORTHO05D009803 1.3e-47 195.3 193 51.8
A09p27430 Brassica napus HOM05D007750 ORTHO05D009803 4.9e-47 193.4 193 51.8
PGSC0003DMG400022754 Solanum tuberosum HOM05D007750 ORTHO05D009803 6.4e-47 193.0 193 51.3
CAN.G981.43 Capsicum annuum HOM05D007750 ORTHO05D009803 8.4e-47 192.6 193 51.3
Psat1g083360 Pisum sativum HOM05D007750 ORTHO05D009803 8.4e-47 192.6 193 54.9
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 2.4e-46 191.0 191 50.3
C09p34750 Brassica napus HOM05D007750 ORTHO05D009803 3.2e-46 190.7 193 51.3
BolC9t56321H Brassica oleracea HOM05D007750 ORTHO05D009803 3.2e-46 190.7 193 51.3
Medtr6g022260 Medicago truncatula HOM05D007750 ORTHO05D009803 4.2e-46 190.3 193 52.3
arahy.Tifrunner.gnm1.ann1.7C1NTJ Arachis hypogaea HOM05D007750 ORTHO05D009803 4.6e-45 186.8 194 56.2
Lj2g0016115 Lotus japonicus HOM05D007750 ORTHO05D009803 4.6e-45 186.8 193 51.3
Lalb_Chr12g0196171 Lupinus albus HOM05D007750 ORTHO05D009803 7.9e-45 186.0 193 48.7
Sopen08g028580 Solanum pennellii HOM05D007750 ORTHO05D009803 1.3e-44 185.3 193 50.3
Cc01_g12900 Coffea canephora HOM05D007750 ORTHO05D009803 6.6e-44 183.0 193 51.3
Phvul.003G092000 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 6.6e-44 183.0 193 52.8
Phvul.003G091900 Phaseolus vulgaris HOM05D007750 ORTHO05D009803 8.7e-44 182.6 193 51.3
arahy.Tifrunner.gnm1.ann1.T5BWJF Arachis hypogaea HOM05D007750 ORTHO05D009803 1.9e-43 181.4 191 55.5
VMungo1215G1573 Vigna mungo HOM05D007750 ORTHO05D009803 1.9e-43 181.4 193 52.8
Glyma.07G217200 Glycine max HOM05D007750 ORTHO05D009803 9.6e-43 179.1 193 53.4
Glyma.06G033500 Glycine max HOM05D007750 ORTHO05D009803 1.3e-42 178.7 196 52.0
AT4G11690 Arabidopsis thaliana HOM05D007750 ORTHO05D009803 5.3e-41 173.3 195 48.2
Migut.N02392 Erythranthe guttata HOM05D007750 ORTHO05D009803 6.9e-41 172.9 194 44.8
MBI14_g36920_MAGBIO Magnolia biondii HOM05D002509 ORTHO05D002758 6.9e-41 172.9 193 49.2
Rhsim13G0082600 Rhododendron simsii HOM05D007750 ORTHO05D009803 5.8e-40 169.9 155 57.4
Glyma.17G016400 Glycine max HOM05D007750 ORTHO05D009803 1.1e-38 165.6 193 49.7
Potri.017G131600 Populus trichocarpa HOM05D007750 ORTHO05D009803 9.3e-38 162.5 193 48.2
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 9.3e-38 162.5 192 45.8
Sc21g0005800 Simmondsia chinensis HOM05D007750 ORTHO05D009803 4.6e-37 160.2 194 47.9
SalBow3G4043 Salvia bowleyana HOM05D007750 ORTHO05D009803 1.4e-33 148.7 194 40.7
Sabra17G0109600 Salix brachista HOM05D007750 ORTHO05D009803 2.6e-32 144.4 111 59.5
Actinidia07034 Actinidia chinensis HOM05D007750 ORTHO05D009803 3.8e-31 140.6 176 51.1
BcaB01g01674 Brassica carinata HOM05D007750 ORTHO05D009803 3.8e-31 140.6 179 45.8
COL.COLO4_18513 Corchorus olitorius HOM05D007750 ORTHO05D009803 1.2e-29 135.6 193 40.4
AUR62018631 Chenopodium quinoa HOM05D007750 ORTHO05D009803 2.1e-29 134.8 174 44.8
Lj1P153T20 Lonicera japonica HOM05D007750 ORTHO05D009803 3.0e-28 131.0 112 50.9
Ciclev10030066m.g Citrus clementina HOM05D007750 ORTHO05D009803 5.1e-28 130.2 196 42.9
ClCG09G016230 Citrullus lanatus HOM05D007750 ORTHO05D009803 2.1e-26 124.8 154 46.1
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 3.7e-26 124.0 196 43.9
Glyma.07G257600 Glycine max HOM05D007750 ORTHO05D009803 2.4e-25 121.3 193 42.0
AL6G46300 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 9.0e-25 119.4 84 61.9
AL6G46430 Arabidopsis lyrata HOM05D007750 ORTHO05D009803 9.0e-25 119.4 84 61.9
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 3.4e-24 117.5 193 32.1
CsaV3_7G007090 Cucumis sativus L. HOM05D007750 ORTHO05D009803 3.6e-21 107.5 152 43.4
Nitab4.5_0007891g0010 Nicotiana tabacum HOM05D007750 ORTHO05D009803 3.3e-19 100.9 84 52.4
Nitab4.5_0001714g0210 Nicotiana tabacum HOM05D007750 ORTHO05D009803 1.3e-18 99.0 84 52.4
EL10Ac5g12003 Beta vulgaris HOM05D007750 ORTHO05D009803 1.4e-17 95.5 84 51.2
Oeu012315.1 Olea europaea HOM05D007750 ORTHO05D009803 4.5e-16 90.5 84 46.4
Hma1.2p1_0418F.1_g149220 Hydrangea macrophylla HOM05D007750 ORTHO05D009803 7.2e-14 83.2 58 62.1
Eucgr.H02967 Eucalyptus grandis HOM05D007750 ORTHO05D009803 6.7e-12 76.6 84 44.0
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.7e-10 70.9 174 28.7
Migut.H00180 Erythranthe guttata HOM05D000891 ORTHO05D000761 9.1e-09 66.2 107 31.8
Lsat_1_v5_gn_9_106260 Lactuca sativa HOM05D007455 ORTHO05D009431 2.6e-08 64.7 193 24.9
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 3.4e-08 64.3 183 26.2
SEGI_21882 Sequoiadendron giganteum HOM05D007750 ORTHO05D009431 3.4e-08 64.3 139 29.5
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 4.5e-08 63.9 178 28.7
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.9e-08 63.5 186 29.0
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 1.3e-07 62.4 108 28.7
Atru.chr3.547 Acer truncatum HOM05D000891 ORTHO05D000761 2.2e-07 61.6 107 29.0
DCAR_030120 Daucus carota HOM05D000424 ORTHO05D000355 2.2e-07 61.6 102 28.4
Sp3g28900 Schrenkiella parvula HOM05D007083 ORTHO05D008801 2.9e-07 61.2 177 29.9
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 2.9e-07 61.2 177 28.8
MSTRG.23543 Avicennia marina HOM05D000891 ORTHO05D000761 3.8e-07 60.8 107 31.8
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 3.8e-07 60.8 177 28.2
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 6.5e-07 60.1 179 24.6
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 6.5e-07 60.1 192 26.0
SGA_v2.0_scaffold33G13374 Striga asiatica HOM05D000891 ORTHO05D000761 8.5e-07 59.7 107 32.7
DCAR_030127 Daucus carota HOM05D000424 ORTHO05D000355 1.4e-06 58.9 102 27.5
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 1.4e-06 58.9 85 35.3
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 2.5e-06 58.2 181 27.6
AT4G36680 Arabidopsis thaliana HOM05D000891 ORTHO05D000761 3.2e-06 57.8 110 29.1
COL.COLO4_22110 Corchorus olitorius HOM05D000891 ORTHO05D000761 3.2e-06 57.8 108 27.8
Prupe.8G019300 Prunus persica HOM05D007083 ORTHO05D008801 3.2e-06 57.8 190 26.3
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 4.2e-06 57.4 180 23.3
Oeu014918.1 Olea europaea HOM05D000891 ORTHO05D000761 4.2e-06 57.4 97 34.0
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 5.5e-06 57.0 166 21.7
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 7.2e-06 56.6 113 24.8
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 7.2e-06 56.6 110 28.2
Carub.0007s0364 Capsella rubella HOM05D000891 ORTHO05D000761 7.2e-06 56.6 110 29.1
Ciclev10025762m.g Citrus clementina HOM05D000891 ORTHO05D000761 7.2e-06 56.6 107 28.0
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 7.2e-06 56.6 194 26.3
Thhalv10022592m.g Eutrema salsugineum HOM05D007083 ORTHO05D008801 7.2e-06 56.6 97 33.0
Thhalv10027579m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 7.2e-06 56.6 110 28.2
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 7.2e-06 56.6 193 21.8
SGA_v2.0_scaffold496G52473 Striga asiatica HOM05D007455 ORTHO05D009431 7.2e-06 56.6 169 24.9
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 7.2e-06 56.6 192 25.5
Glyma.06G020900 Glycine max HOM05D000424 ORTHO05D000355 9.4e-06 56.2 102 29.4
Psat5g012240 Pisum sativum HOM05D000424 ORTHO05D000355 9.4e-06 56.2 102 28.4
Potri.001G171300 Populus trichocarpa HOM05D000891 ORTHO05D000761 9.4e-06 56.2 106 28.3
Sabra05G0103000 Salix brachista HOM05D000891 ORTHO05D000761 9.4e-06 56.2 107 29.0


User provided reference genes

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