Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 7.3e-78 293.9 156 100.0
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 1.9e-54 216.1 152 73.0
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 2.5e-54 215.7 155 69.0
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 3.3e-54 215.3 155 73.5
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 7.4e-54 214.2 157 68.8
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 1.3e-53 213.4 155 70.3
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 3.7e-53 211.8 155 73.5
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 3.7e-53 211.8 154 73.4
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 6.2e-53 211.1 154 66.9
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.1e-52 210.3 153 67.3
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 1.1e-52 210.3 136 74.3
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 3.1e-52 208.8 136 79.4
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 3.1e-52 208.8 136 75.0
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 4.0e-52 208.4 155 67.1
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 5.3e-52 208.0 156 67.3
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 5.3e-52 208.0 152 71.1
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 6.9e-52 207.6 139 75.5
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 1.5e-51 206.5 153 66.0
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 1.7e-50 203.0 153 68.6
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 2.2e-50 202.6 149 69.8
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 3.8e-50 201.8 126 77.8
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 4.9e-50 201.4 155 67.1
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 1.9e-49 199.5 155 63.2
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 3.2e-49 198.7 126 77.8
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 3.2e-49 198.7 155 65.8
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 4.2e-49 198.4 158 67.1
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 5.5e-49 198.0 157 63.7
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 7.1e-49 197.6 126 82.5
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 7.1e-49 197.6 153 66.7
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 9.3e-49 197.2 154 65.6
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 9.3e-49 197.2 154 65.6
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 9.3e-49 197.2 121 76.9
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 9.3e-49 197.2 124 76.6
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.2e-48 196.8 154 65.6
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.2e-48 196.8 152 67.8
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 1.6e-48 196.4 154 65.6
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 1.6e-48 196.4 152 68.4
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.6e-48 196.4 155 63.2
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.1e-48 196.1 155 62.6
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 2.7e-48 195.7 156 66.7
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 3.5e-48 195.3 153 64.7
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 3.5e-48 195.3 152 67.1
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 4.6e-48 194.9 152 65.8
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 7.9e-48 194.1 153 65.4
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 7.9e-48 194.1 121 76.0
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 7.9e-48 194.1 155 62.6
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 1.0e-47 193.7 124 71.8
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 1.3e-47 193.4 153 66.0
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 1.8e-47 193.0 156 64.7
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.8e-47 193.0 126 80.2
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 1.8e-47 193.0 156 61.5
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 2.3e-47 192.6 128 77.3
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.3e-47 192.6 152 68.4
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 2.3e-47 192.6 152 63.8
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 3.0e-47 192.2 155 61.9
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 5.1e-47 191.4 123 74.8
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 5.1e-47 191.4 158 68.4
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 8.7e-47 190.7 135 72.6
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 8.7e-47 190.7 126 71.4
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.5e-46 189.9 122 73.8
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 3.3e-46 188.7 123 77.2
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 3.3e-46 188.7 123 74.0
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 4.3e-46 188.3 122 72.1
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 7.4e-46 187.6 157 65.0
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 7.4e-46 187.6 128 71.9
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 1.6e-45 186.4 126 69.8
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 2.1e-45 186.0 126 69.8
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 2.8e-45 185.7 128 70.3
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 4.8e-45 184.9 138 68.8
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 4.8e-45 184.9 154 63.6
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 4.8e-45 184.9 138 65.9
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 4.8e-45 184.9 130 70.8
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 1.4e-44 183.3 123 69.9
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.8e-44 183.0 137 62.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 3.1e-44 182.2 123 72.4
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 3.1e-44 182.2 124 71.8
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 4.0e-44 181.8 147 60.5
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 2.0e-43 179.5 152 64.5
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 2.6e-43 179.1 123 71.5
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 3.4e-43 178.7 124 67.7
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 4.5e-43 178.3 148 64.2
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 7.6e-43 177.6 129 65.9
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 1.1e-41 173.7 151 63.6
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 1.1e-41 173.7 148 64.9
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 1.4e-41 173.3 122 69.7
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 1.9e-41 172.9 152 60.5
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 7.1e-41 171.0 152 59.9
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 1.2e-40 170.2 148 64.2
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 3.5e-40 168.7 127 70.1
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 4.6e-40 168.3 127 64.6
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 7.9e-40 167.5 119 68.1
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 1.0e-39 167.2 155 60.0
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.8e-39 166.4 124 68.5
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 1.8e-39 166.4 116 67.2
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.8e-39 166.4 122 65.6
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 3.0e-39 165.6 146 54.8
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 1.1e-38 163.7 118 66.9
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 1.3e-37 160.2 152 55.3
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 6.3e-37 157.9 121 65.3
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 8.2e-37 157.5 123 67.5
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 1.1e-36 157.1 121 65.3
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.8e-36 156.4 124 62.1
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 1.2e-35 153.7 127 61.4
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.2e-34 149.4 123 58.5
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 3.8e-34 148.7 132 57.6
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 4.2e-33 145.2 155 52.9
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 5.5e-33 144.8 155 52.9
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 7.4e-30 134.4 121 52.1
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 2.2e-29 132.9 94 70.2
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 2.2e-26 122.9 123 48.0
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 3.8e-26 122.1 103 62.1
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 1.6e-24 116.7 112 52.7
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.4e-23 113.6 117 50.4
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 3.3e-22 109.0 135 51.9
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 6.3e-21 104.8 84 57.1
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 3.1e-20 102.4 121 48.8
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 4.1e-20 102.1 149 43.0
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 5.9e-19 98.2 110 45.5
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 5.9e-19 98.2 94 59.6
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.8e-18 95.5 85 54.1
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 1.4e-17 93.6 81 56.8
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 3.6e-16 89.0 121 47.1
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 5.5e-09 65.1 60 60.0
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 6.1e-08 61.6 104 39.4
BcaC08g47102 Brassica carinata HOM05D006402 ORTHO05D008099 2.3e-07 59.7 50 60.0


User provided reference genes

Program Settings