Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc809.1 Carica papaya HOM05D000803 ORTHO05D009288 6.0e-32 140.2 69 100.0
Ciclev10032824m.g Citrus clementina HOM05D000803 ORTHO05D009288 1.3e-26 122.5 69 82.6
CiPaw.05G170800 Carya illinoinensis HOM05D000803 ORTHO05D009288 8.4e-26 119.8 69 82.6
GSVIVG01026149001 Vitis vinifera HOM05D000803 ORTHO05D009288 1.4e-25 119.0 69 82.6
QL03p046068 Quercus lobata HOM05D000803 ORTHO05D009288 1.9e-25 118.6 68 82.4
QL03p046129 Quercus lobata HOM05D000803 ORTHO05D009288 1.9e-25 118.6 68 82.4
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 3.2e-25 117.9 69 79.7
Dinv17639 Davidia involucrata HOM05D000803 ORTHO05D009288 3.2e-25 117.9 69 79.7
Glyma.10G285000 Glycine max HOM05D000803 ORTHO05D009288 3.2e-25 117.9 69 81.2
arahy.Tifrunner.gnm1.ann1.NS7DLW Arachis hypogaea HOM05D000803 ORTHO05D009288 4.1e-25 117.5 69 81.2
Glyma.20G104000 Glycine max HOM05D000803 ORTHO05D009288 4.1e-25 117.5 69 81.2
Gohir.D04G148500 Gossypium hirsutum HOM05D000803 ORTHO05D009288 4.1e-25 117.5 69 81.2
Gorai.012G134800 Gossypium raimondii HOM05D000803 ORTHO05D009288 4.1e-25 117.5 69 81.2
Atru.chr11.1152 Acer truncatum HOM05D000803 ORTHO05D009288 7.1e-25 116.7 69 79.7
FvH4_4g06760 Fragaria vesca HOM05D000803 ORTHO05D009288 9.2e-25 116.3 69 81.2
FAN12G0291 Fragaria x ananassa HOM05D000803 ORTHO05D009288 9.2e-25 116.3 69 81.2
Gohir.A04G109000 Gossypium hirsutum HOM05D000803 ORTHO05D009288 9.2e-25 116.3 69 79.7
Duzib052G0208 Durio zibethinus HOM05D000803 ORTHO05D009288 1.2e-24 115.9 69 81.2
RcHm_v2.0_Chr4g0398691 Rosa chinensis HOM05D000803 ORTHO05D009288 1.2e-24 115.9 69 79.7
Lalb_Chr02g0143601 Lupinus albus HOM05D000803 ORTHO05D009288 1.6e-24 115.5 67 80.6
Sabra07G0061800 Salix brachista HOM05D000803 ORTHO05D009288 1.6e-24 115.5 69 78.3
Duzib132G0129 Durio zibethinus HOM05D000803 ORTHO05D009288 2.1e-24 115.2 69 79.7
THA.LOC104826518 Tarenaya hassleriana HOM05D000803 ORTHO05D009288 2.1e-24 115.2 69 75.4
TWI74G0120 Tripterygium wilfordii HOM05D000803 ORTHO05D009288 2.1e-24 115.2 69 81.2
FAN07G2540 Fragaria x ananassa HOM05D000803 ORTHO05D009288 2.7e-24 114.8 69 79.7
Medtr1g114290 Medicago truncatula HOM05D000803 ORTHO05D009288 4.6e-24 114.0 69 75.4
Prupe.1G070700 Prunus persica HOM05D000803 ORTHO05D009288 4.6e-24 114.0 69 79.7
Lj5g0005958 Lotus japonicus HOM05D000803 ORTHO05D009288 7.8e-24 113.2 66 78.8
Potri.007G074000 Populus trichocarpa HOM05D000803 ORTHO05D009288 1.0e-23 112.8 69 75.4
arahy.Tifrunner.gnm1.ann1.UN3H83 Arachis hypogaea HOM05D000803 ORTHO05D009288 1.7e-23 112.1 69 76.8
Cc00_g16790 Coffea canephora HOM05D000803 ORTHO05D009288 1.7e-23 112.1 69 76.8
Haze_11775 Corylus avellana HOM05D000803 ORTHO05D009288 1.7e-23 112.1 69 76.8
arahy.Tifrunner.gnm1.ann1.SVRA7T Arachis hypogaea HOM05D000803 ORTHO05D009288 3.0e-23 111.3 69 76.8
Migut.O00873 Erythranthe guttata HOM05D000803 ORTHO05D009288 3.0e-23 111.3 66 77.3
TPR.G4141 Trifolium pratense HOM05D000803 ORTHO05D009288 3.0e-23 111.3 69 76.8
TAR622G1240 Trochodendron aralioides HOM05D000803 ORTHO05D009288 3.0e-23 111.3 69 73.9
Eucgr.J00880 Eucalyptus grandis HOM05D000803 ORTHO05D009288 5.1e-23 110.5 69 73.9
MBI06_g27502_MAGBIO Magnolia biondii HOM05D000803 ORTHO05D009288 5.1e-23 110.5 69 75.4
Psat6g233480 Pisum sativum HOM05D000803 ORTHO05D009288 6.6e-23 110.2 69 73.9
Solyc01g008250.3 Solanum lycopersicum HOM05D000803 ORTHO05D009288 6.6e-23 110.2 69 75.4
Migut.E00687 Erythranthe guttata HOM05D000803 ORTHO05D009288 8.6e-23 109.8 66 75.8
Nn3g18624 Nelumbo nucifera HOM05D000803 ORTHO05D009288 8.6e-23 109.8 69 75.4
Sopen01g003770 Solanum pennellii HOM05D000803 ORTHO05D009288 8.6e-23 109.8 69 73.9
Aa31LG10G3930 Aethionema arabicum HOM05D000803 ORTHO05D009288 1.1e-22 109.4 69 72.5
Peaxi162Scf00021g02221 Petunia axillaris HOM05D000803 ORTHO05D009288 1.1e-22 109.4 69 73.9
CANSAT78G0634 Cannabis sativa HOM05D000803 ORTHO05D009288 1.5e-22 109.0 69 75.4
Oeu006340.1 Olea europaea HOM05D000803 ORTHO05D009288 1.5e-22 109.0 69 72.5
Rhsim09G0069900 Rhododendron simsii HOM05D000803 ORTHO05D009288 1.5e-22 109.0 69 73.9
RhsimUnG0173800 Rhododendron simsii HOM05D000803 ORTHO05D009288 1.5e-22 109.0 69 73.9
arahy.Tifrunner.gnm1.ann1.6Y22KH Arachis hypogaea HOM05D000803 ORTHO05D009288 1.9e-22 108.6 67 76.1
Phvul.007G015500 Phaseolus vulgaris HOM05D000803 ORTHO05D009288 1.9e-22 108.6 69 75.4
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 1.9e-22 108.6 69 75.4
PGR044G0351 Punica granatum HOM05D000803 ORTHO05D009288 2.5e-22 108.2 69 69.6
Sp1g37160 Schrenkiella parvula HOM05D000803 ORTHO05D009288 2.5e-22 108.2 69 69.6
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 2.5e-22 108.2 69 72.5
Actinidia04326 Actinidia chinensis HOM05D000803 ORTHO05D009288 3.3e-22 107.8 69 75.4
Lsat_1_v5_gn_3_36620 Lactuca sativa HOM05D000803 ORTHO05D009288 3.3e-22 107.8 69 71.0
ATR0618G274 Amborella trichopoda HOM05D000803 ORTHO05D009288 4.3e-22 107.5 62 77.4
Thhalv10012400m.g Eutrema salsugineum HOM05D000803 ORTHO05D009288 4.3e-22 107.5 69 69.6
Nitab4.5_0002387g0050 Nicotiana tabacum HOM05D000803 ORTHO05D009288 4.3e-22 107.5 69 72.5
AT1G50320 Arabidopsis thaliana HOM05D000803 ORTHO05D009288 5.6e-22 107.1 69 69.6
arahy.Tifrunner.gnm1.ann1.7N4CEX Arachis hypogaea HOM05D000803 ORTHO05D009288 5.6e-22 107.1 69 72.5
CSS0035072 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 5.6e-22 107.1 69 72.5
CSS0035181 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 5.6e-22 107.1 69 72.5
arahy.Tifrunner.gnm1.ann1.2L9GNP Arachis hypogaea HOM05D000803 ORTHO05D009288 7.3e-22 106.7 69 73.9
PGSC0003DMG400016361 Solanum tuberosum HOM05D000803 ORTHO05D009288 7.3e-22 106.7 69 72.5
Aqoxy7G01361 Aquilegia oxysepala HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 72.5
AL1G57960 Arabidopsis lyrata HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 68.1
MSTRG.13680 Avicennia marina HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 71.0
A06p03220 Brassica napus HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 71.0
C06p05410 Brassica napus HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 71.0
BolC6t35646H Brassica oleracea HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 71.0
BraA06t23533Z Brassica rapa HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 71.0
CAN.G282.48 Capsicum annuum HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 69.6
CARHR039560 Cardamine hirsuta HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 68.1
Os04g0676100 Oryza sativa ssp. japonica HOM05D000803 ORTHO05D009288 1.2e-21 105.9 69 71.0
Carub.0001s3942 Capsella rubella HOM05D000803 ORTHO05D009288 1.6e-21 105.5 69 66.7
Sc02g0004820 Simmondsia chinensis HOM05D000803 ORTHO05D009288 1.6e-21 105.5 66 72.7
Zm00001eb066320 Zea mays HOM05D000803 ORTHO05D009288 1.6e-21 105.5 68 72.1
PSO063G3598 Papaver somniferum HOM05D000803 ORTHO05D009288 8.1e-21 103.2 67 70.1
PSO782G1772 Papaver somniferum HOM05D000803 ORTHO05D009288 5.2e-20 100.5 67 64.2
DCAR_002593 Daucus carota HOM05D000803 ORTHO05D009288 1.5e-19 99.0 67 65.7
FAN22G0075 Fragaria x ananassa HOM05D000803 ORTHO05D009288 1.5e-19 99.0 56 83.9
Nitab4.5_0000069g0180 Nicotiana tabacum HOM05D000803 ORTHO05D009288 1.5e-19 99.0 61 73.8
SEGI_04482 Sequoiadendron giganteum HOM05D000803 ORTHO05D009288 2.6e-19 98.2 66 68.2
arahy.Tifrunner.gnm1.ann1.2X0IV6 Arachis hypogaea HOM05D000803 ORTHO05D009288 5.8e-19 97.1 68 69.1
Zm00001eb433660 Zea mays HOM05D000803 ORTHO05D009288 2.2e-18 95.1 64 67.2
CDE04G3619 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 2.4e-17 91.7 69 58.0
SMO364G0178 Selaginella moellendorffii HOM05D000803 ORTHO05D009288 2.7e-16 88.2 64 59.4
CDE02G1801 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 4.6e-16 87.4 62 61.3
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 4.6e-16 87.4 55 70.9
Thecc.02G157100 Theobroma cacao HOM05D000803 ORTHO05D009288 4.6e-16 87.4 47 85.1
Cre01.g052250 Chlamydomonas reinhardtii HOM05D000803 ORTHO05D009288 1.7e-15 85.5 58 63.8
Cfa008764 Carpinus fangiana HOM05D000803 ORTHO05D009288 3.9e-15 84.3 46 84.8
Mapoly0022s0050 Marchantia polymorpha HOM05D000803 ORTHO05D009288 1.6e-13 79.0 66 57.6
Pp3c8_8140 Physcomitrium patens HOM05D000803 ORTHO05D009288 4.8e-13 77.4 69 50.7
AagrBONN_evm.TU.Sc2ySwM_117.4096 Anthoceros agrestis HOM05D000803 ORTHO05D009288 1.8e-12 75.5 65 50.8
MCO03G062 Micromonas commoda HOM05D000803 ORTHO05D009288 4.0e-12 74.3 55 60.0
Pp3c24_4980 Physcomitrium patens HOM05D000803 ORTHO05D009288 6.9e-12 73.6 69 50.7
vmacro15984 Vaccinium macrocarpon HOM05D000803 ORTHO05D009288 6.0e-08 60.5 35 74.3
SalBow7G1797 Salvia bowleyana HOM05D000803 ORTHO05D007008 2.3e-07 58.5 60 46.7
SalBow7G3643 Salvia bowleyana HOM05D000803 ORTHO05D007008 2.3e-07 58.5 60 46.7
PSO541G3025 Papaver somniferum HOM05D000803 ORTHO05D007008 3.0e-07 58.2 63 42.9
PSO734G0001 Papaver somniferum HOM05D000803 ORTHO05D007008 3.0e-07 58.2 63 42.9
A07p42400 Brassica napus HOM05D000803 ORTHO05D007008 5.1e-07 57.4 60 45.0
BraA07t31766Z Brassica rapa HOM05D000803 ORTHO05D007008 5.1e-07 57.4 60 45.0
PSO675G7586 Papaver somniferum HOM05D000803 ORTHO05D007008 5.1e-07 57.4 63 41.3
EL10Ac1g01567 Beta vulgaris HOM05D000803 ORTHO05D007008 6.7e-07 57.0 63 44.4
AUR62040603 Chenopodium quinoa HOM05D000803 ORTHO05D007008 8.7e-07 56.6 63 44.4
MD10G1028500 Malus domestica HOM05D000803 ORTHO05D007008 8.7e-07 56.6 64 40.6
Aqoxy5G00856 Aquilegia oxysepala HOM05D000803 ORTHO05D007008 1.1e-06 56.2 59 44.1
MD05G1027800 Malus domestica HOM05D000803 ORTHO05D007008 1.1e-06 56.2 64 40.6
Atru.chr13.2085 Acer truncatum HOM05D000803 ORTHO05D007008 1.5e-06 55.8 59 45.8
unitig_749.g13915 Utricularia gibba HOM05D000803 ORTHO05D007008 1.5e-06 55.8 65 40.0
Ciclev10002691m.g Citrus clementina HOM05D000803 ORTHO05D007008 1.9e-06 55.5 59 44.1
TPR.G17024 Trifolium pratense HOM05D000803 ORTHO05D007008 1.9e-06 55.5 59 44.1
MSTRG.25310 Avicennia marina HOM05D000803 ORTHO05D007008 2.5e-06 55.1 61 44.3
CSS0028056 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D007008 2.5e-06 55.1 60 41.7
Prupe.8G033500 Prunus persica HOM05D000803 ORTHO05D007008 2.5e-06 55.1 60 41.7
C06p50970 Brassica napus HOM05D000803 ORTHO05D007008 3.3e-06 54.7 60 43.3
BolC6t40121H Brassica oleracea HOM05D000803 ORTHO05D007008 3.3e-06 54.7 60 43.3
Nitab4.5_0001187g0140 Nicotiana tabacum HOM05D000803 ORTHO05D007008 3.3e-06 54.7 60 43.3
Psat1g027360 Pisum sativum HOM05D000803 ORTHO05D007008 3.3e-06 54.7 60 45.0
THA.LOC104812033 Tarenaya hassleriana HOM05D000803 ORTHO05D007008 3.3e-06 54.7 61 42.6
vmacro12407 Vaccinium macrocarpon HOM05D000803 ORTHO05D007008 3.3e-06 54.7 60 41.7
Gohir.A05G244100 Gossypium hirsutum HOM05D000803 ORTHO05D007008 4.3e-06 54.3 59 44.1
Hma1.2p1_0105F.1_g050550 Hydrangea macrophylla HOM05D000803 ORTHO05D007008 4.3e-06 54.3 60 41.7
Sp5g31910 Schrenkiella parvula HOM05D000803 ORTHO05D007008 4.3e-06 54.3 60 43.3
PGSC0003DMG400024095 Solanum tuberosum HOM05D000803 ORTHO05D007008 4.3e-06 54.3 60 43.3
Carub.0002s2367 Capsella rubella HOM05D000803 ORTHO05D007008 5.6e-06 53.9 60 43.3
FvH4_2g13460 Fragaria vesca HOM05D000803 ORTHO05D007008 5.6e-06 53.9 60 41.7
FAN15G1904 Fragaria x ananassa HOM05D000803 ORTHO05D007008 5.6e-06 53.9 60 41.7
FAN24G3234 Fragaria x ananassa HOM05D000803 ORTHO05D007008 5.6e-06 53.9 60 41.7
FAN27G3502 Fragaria x ananassa HOM05D000803 ORTHO05D007008 5.6e-06 53.9 60 41.7
Gohir.D05G245100 Gossypium hirsutum HOM05D000803 ORTHO05D007008 5.6e-06 53.9 59 42.4
Gorai.009G254900 Gossypium raimondii HOM05D000803 ORTHO05D007008 5.6e-06 53.9 59 42.4
SEGI_08164 Sequoiadendron giganteum HOM05D000803 ORTHO05D007008 5.6e-06 53.9 60 46.7
Ca_10681_v3 Cicer arietinum L. HOM05D000803 ORTHO05D007008 7.4e-06 53.5 60 43.3
Lalb_Chr02g0141441 Lupinus albus HOM05D000803 ORTHO05D007008 7.4e-06 53.5 60 43.3
Medtr1g098660 Medicago truncatula HOM05D000803 ORTHO05D007008 7.4e-06 53.5 59 42.4
Nitab4.5_0002497g0030 Nicotiana tabacum HOM05D000803 ORTHO05D007008 7.4e-06 53.5 60 43.3
RcHm_v2.0_Chr6g0275081 Rosa chinensis HOM05D000803 ORTHO05D007008 7.4e-06 53.5 60 41.7
GSVIVG01034548001 Vitis vinifera HOM05D000803 ORTHO05D007008 7.4e-06 53.5 60 40.0
CAN.G1215.9 Capsicum annuum HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 41.7
Cc10_g14920 Coffea canephora HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 38.3
Dinv25877 Davidia involucrata HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 40.0
Manes.18G093000 Manihot esculenta HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 41.7
Phvul.007G080600 Phaseolus vulgaris HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 41.7
Solyc04g071560.4 Solanum lycopersicum HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 43.3
Sopen04g027540 Solanum pennellii HOM05D000803 ORTHO05D007008 9.6e-06 53.1 60 43.3


User provided reference genes

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