Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc808.1 Carica papaya HOM05D002231 ORTHO05D006103 4.4e-62 241.1 123 100.0
CANSAT01G1083 Cannabis sativa HOM05D002231 ORTHO05D006103 2.0e-54 215.7 120 90.8
Cfa009373 Carpinus fangiana HOM05D002231 ORTHO05D006103 3.4e-54 214.9 120 89.2
MD13G1119600 Malus domestica HOM05D002231 ORTHO05D006103 5.8e-54 214.2 120 87.5
MD16G1119800 Malus domestica HOM05D002231 ORTHO05D006103 5.8e-54 214.2 120 87.5
Prupe.1G225400 Prunus persica HOM05D002231 ORTHO05D006103 5.8e-54 214.2 120 88.3
Cc11_g16940 Coffea canephora HOM05D002231 ORTHO05D006103 7.6e-54 213.8 120 89.2
Gorai.002G183300 Gossypium raimondii HOM05D002231 ORTHO05D006103 9.9e-54 213.4 120 90.0
arahy.Tifrunner.gnm1.ann1.4LX5KX Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-53 213.0 120 88.3
arahy.Tifrunner.gnm1.ann1.A5UQ16 Arachis hypogaea HOM05D002231 ORTHO05D006103 1.3e-53 213.0 120 88.3
Gohir.A01G160300 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.3e-53 213.0 120 89.2
Potri.001G056500 Populus trichocarpa HOM05D002231 ORTHO05D006103 1.3e-53 213.0 120 88.3
Sc11g0000450 Simmondsia chinensis HOM05D002231 ORTHO05D006103 1.3e-53 213.0 120 88.3
Thecc.02G207900 Theobroma cacao HOM05D002231 ORTHO05D006103 1.3e-53 213.0 120 89.2
RcHm_v2.0_Chr4g0430201 Rosa chinensis HOM05D002231 ORTHO05D006103 1.7e-53 212.6 120 86.7
Actinidia30646 Actinidia chinensis HOM05D002231 ORTHO05D006103 2.2e-53 212.2 120 88.3
GSVIVG01010488001 Vitis vinifera HOM05D002231 ORTHO05D006103 2.9e-53 211.8 120 87.5
CiPaw.05G109300 Carya illinoinensis HOM05D002231 ORTHO05D006103 3.8e-53 211.5 120 88.3
Nn3g16455 Nelumbo nucifera HOM05D002231 ORTHO05D006103 3.8e-53 211.5 119 89.1
TPR.G17792 Trifolium pratense HOM05D002231 ORTHO05D006103 3.8e-53 211.5 120 87.5
Dinv10954 Davidia involucrata HOM05D002231 ORTHO05D006103 4.9e-53 211.1 119 87.4
Manes.12G011000 Manihot esculenta HOM05D002231 ORTHO05D006103 6.4e-53 210.7 120 87.5
Medtr3g085280 Medicago truncatula HOM05D002231 ORTHO05D006103 6.4e-53 210.7 120 87.5
Gohir.D01G147100 Gossypium hirsutum HOM05D002231 ORTHO05D006103 8.4e-53 210.3 120 88.3
CiPaw.06G102900 Carya illinoinensis HOM05D002231 ORTHO05D006103 1.1e-52 209.9 120 86.7
Lalb_Chr23g0278101 Lupinus albus HOM05D002231 ORTHO05D006103 1.1e-52 209.9 120 86.7
Dinv17566 Davidia involucrata HOM05D002231 ORTHO05D005593 1.4e-52 209.5 118 87.3
Psat5g096440 Pisum sativum HOM05D002231 ORTHO05D006103 1.4e-52 209.5 120 87.5
Sabra01G0040900 Salix brachista HOM05D002231 ORTHO05D006103 1.4e-52 209.5 119 87.4
Aqoxy5G03366 Aquilegia oxysepala HOM05D002231 ORTHO05D006103 2.4e-52 208.8 120 86.7
MSTRG.501 Avicennia marina HOM05D002231 ORTHO05D006103 2.4e-52 208.8 120 86.7
PGR102G0892 Punica granatum HOM05D002231 ORTHO05D006103 2.4e-52 208.8 120 85.0
Eucgr.B03496 Eucalyptus grandis HOM05D002231 ORTHO05D006103 3.2e-52 208.4 120 87.5
FAN17G0493 Fragaria x ananassa HOM05D002231 ORTHO05D005593 3.2e-52 208.4 119 84.9
FAN22G0585 Fragaria x ananassa HOM05D002231 ORTHO05D006103 3.2e-52 208.4 120 85.0
CSS0047868 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.2e-52 208.0 120 85.0
CSS0048016 Camellia sinensis var. sinensis HOM05D002231 ORTHO05D006103 4.2e-52 208.0 120 85.0
Potri.003G172000 Populus trichocarpa HOM05D002231 ORTHO05D006103 4.2e-52 208.0 120 85.8
Ciclev10032446m.g Citrus clementina HOM05D002231 ORTHO05D006103 5.4e-52 207.6 120 85.8
Glyma.11G250900 Glycine max HOM05D002231 ORTHO05D006103 5.4e-52 207.6 120 85.8
Lj6g0006303 Lotus japonicus HOM05D002231 ORTHO05D006103 5.4e-52 207.6 120 85.8
TWI36G0137 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 7.1e-52 207.2 120 86.7
EL10Ac6g13507 Beta vulgaris HOM05D002231 ORTHO05D006103 1.6e-51 206.1 120 85.8
AUR62028925 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.6e-51 206.1 120 84.2
Glyma.18G006100 Glycine max HOM05D002231 ORTHO05D006103 1.6e-51 206.1 120 85.0
Sabra03G0125900 Salix brachista HOM05D002231 ORTHO05D005593 1.6e-51 206.1 119 85.7
vmacro01059 Vaccinium macrocarpon HOM05D002231 ORTHO05D006103 1.6e-51 206.1 122 82.0
MSTRG.8006 Avicennia marina HOM05D002231 ORTHO05D006103 2.7e-51 205.3 120 83.3
Nitab4.5_0000067g0140 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.5e-51 204.9 121 85.1
Phvul.001G262200 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 3.5e-51 204.9 120 84.2
VMungo1383G1118 Vigna mungo HOM05D002231 ORTHO05D006103 3.5e-51 204.9 120 85.0
Lsat_1_v5_gn_4_3541 Lactuca sativa HOM05D002231 ORTHO05D006103 4.6e-51 204.5 120 84.2
Lalb_Chr08g0230621 Lupinus albus HOM05D002231 ORTHO05D006103 6.0e-51 204.1 120 84.2
Sed0020663 Sechium edule HOM05D002231 ORTHO05D006103 6.0e-51 204.1 120 83.3
ECA234G2919 Erigeron canadensis HOM05D002231 ORTHO05D006103 7.8e-51 203.8 120 83.3
Hma1.2p1_0275F.1_g110740 Hydrangea macrophylla HOM05D002231 ORTHO05D006103 1.0e-50 203.4 120 85.0
Manes.13G011701 Manihot esculenta HOM05D002231 ORTHO05D006103 1.0e-50 203.4 119 84.9
SGA_v2.0_scaffold9G04675 Striga asiatica HOM05D002231 ORTHO05D006103 1.3e-50 203.0 120 83.3
CsaV3_5G030240 Cucumis sativus L. HOM05D002231 ORTHO05D006103 3.0e-50 201.8 120 82.5
Nitab4.5_0002558g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 3.0e-50 201.8 120 85.0
Sopen04g017470 Solanum pennellii HOM05D002231 ORTHO05D006103 3.0e-50 201.8 120 85.0
Migut.J00960 Erythranthe guttata HOM05D002231 ORTHO05D006103 8.7e-50 200.3 120 81.7
unitig_747.g21125 Utricularia gibba HOM05D002231 ORTHO05D006103 1.5e-49 199.5 120 80.8
Aa31LG7G9850 Aethionema arabicum HOM05D002231 ORTHO05D006103 1.9e-49 199.1 120 79.2
Duzib251G0325 Durio zibethinus HOM05D002231 ORTHO05D006103 1.9e-49 199.1 126 81.7
Gohir.D04G183000 Gossypium hirsutum HOM05D002231 ORTHO05D006103 1.9e-49 199.1 120 82.5
Gorai.012G176000 Gossypium raimondii HOM05D002231 ORTHO05D006103 1.9e-49 199.1 120 82.5
Gohir.A04G139800 Gossypium hirsutum HOM05D002231 ORTHO05D006103 2.5e-49 198.7 120 83.3
CDE02G1146 Ceratophyllum demersum HOM05D002231 ORTHO05D006103 3.3e-49 198.4 117 84.6
PSO017G2330 Papaver somniferum HOM05D002231 ORTHO05D006103 5.6e-49 197.6 120 81.7
Sp1g23610 Schrenkiella parvula HOM05D002231 ORTHO05D006103 5.6e-49 197.6 120 80.0
THA.LOC104807538 Tarenaya hassleriana HOM05D002231 ORTHO05D006103 7.3e-49 197.2 120 79.2
A09p38550 Brassica napus HOM05D002231 ORTHO05D006103 9.6e-49 196.8 120 79.2
A07p11870 Brassica napus HOM05D002231 ORTHO05D006103 1.3e-48 196.4 120 79.2
BraA07t28971Z Brassica rapa HOM05D002231 ORTHO05D006103 1.3e-48 196.4 120 79.2
BcaC06g35283 Brassica carinata HOM05D002231 ORTHO05D006103 1.6e-48 196.1 120 78.3
C07p17810 Brassica napus HOM05D002231 ORTHO05D006103 1.6e-48 196.1 120 78.3
BolC7t42287H Brassica oleracea HOM05D002231 ORTHO05D006103 1.6e-48 196.1 120 78.3
FAN07G0699 Fragaria x ananassa HOM05D002231 ORTHO05D006103 1.6e-48 196.1 142 71.8
Peaxi162Scf00518g00424 Petunia axillaris HOM05D002231 ORTHO05D006103 1.6e-48 196.1 120 82.5
Carub.0001s2592 Capsella rubella HOM05D002231 ORTHO05D006103 2.1e-48 195.7 120 78.3
CARHR026970 Cardamine hirsuta HOM05D002231 ORTHO05D006103 2.1e-48 195.7 120 77.5
AL1G40790 Arabidopsis lyrata HOM05D002231 ORTHO05D006103 2.8e-48 195.3 120 77.5
BolC5t31328H Brassica oleracea HOM05D002231 ORTHO05D006103 2.8e-48 195.3 119 78.2
Hund25467 Selenicereus undatus HOM05D002231 ORTHO05D006103 2.8e-48 195.3 120 80.8
BraA09t39361Z Brassica rapa HOM05D002231 ORTHO05D006103 3.6e-48 194.9 118 78.8
C05p26090 Brassica napus HOM05D002231 ORTHO05D006103 6.2e-48 194.1 119 77.3
FAN12G0590 Fragaria x ananassa HOM05D002231 ORTHO05D006103 8.1e-48 193.7 143 70.6
Thhalv10008813m.g Eutrema salsugineum HOM05D002231 ORTHO05D006103 1.1e-47 193.4 120 77.5
AT1G27385 Arabidopsis thaliana HOM05D002231 ORTHO05D006103 1.4e-47 193.0 118 78.0
QL03p052604 Quercus lobata HOM05D002231 ORTHO05D006103 2.4e-47 192.2 170 63.5
Glyma.08G104500 Glycine max HOM05D002231 ORTHO05D006103 9.0e-47 190.3 120 78.3
Rhsim12G0025500 Rhododendron simsii HOM05D002231 ORTHO05D006103 4.5e-46 188.0 157 65.0
Phvul.L002246 Phaseolus vulgaris HOM05D002231 ORTHO05D006103 5.8e-46 187.6 120 79.2
MELO3C011862.2 Cucumis melo HOM05D002231 ORTHO05D006103 1.7e-45 186.0 120 78.3
Os02g0507400 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 1.4e-44 183.0 120 71.7
SalBow8G1223 Salvia bowleyana HOM05D002231 ORTHO05D006103 1.4e-44 183.0 120 75.8
TAR629G1028 Trochodendron aralioides HOM05D002231 ORTHO05D006103 1.4e-44 183.0 111 81.1
Os04g0386500 Oryza sativa ssp. japonica HOM05D002231 ORTHO05D006103 5.4e-44 181.0 120 74.2
TWI18G1086 Tripterygium wilfordii HOM05D002231 ORTHO05D006103 5.4e-44 181.0 106 85.8
Atru.chr11.2328 Acer truncatum HOM05D002231 ORTHO05D006103 7.1e-44 180.6 102 87.3
Lsat_1_v5_gn_3_31041 Lactuca sativa HOM05D002231 ORTHO05D006103 2.7e-43 178.7 120 73.3
Zm00001eb421060 Zea mays HOM05D002231 ORTHO05D006103 2.7e-43 178.7 120 73.3
Ah.02g130890 Amaranthus hybridus HOM05D002231 ORTHO05D006103 6.0e-43 177.6 120 76.7
Lj4g0021495 Lotus japonicus HOM05D002231 ORTHO05D006103 7.9e-43 177.2 120 75.0
FvH4_4g23720 Fragaria vesca HOM05D002231 ORTHO05D006103 2.3e-42 175.6 102 83.3
ClCG11G013620 Citrullus lanatus HOM05D002231 ORTHO05D006103 5.1e-42 174.5 119 75.6
Solyc04g045580.4 Solanum lycopersicum HOM05D002231 ORTHO05D006103 8.7e-42 173.7 102 85.3
ECA246G2515 Erigeron canadensis HOM05D002231 ORTHO05D006103 1.9e-41 172.6 120 69.2
Ca_16456_v3 Cicer arietinum L. HOM05D002231 ORTHO05D006103 3.3e-41 171.8 101 85.1
Lj3C1069T6 Lonicera japonica HOM05D002231 ORTHO05D006103 3.3e-41 171.8 99 84.8
SalBow1G3407 Salvia bowleyana HOM05D002231 ORTHO05D006103 4.3e-41 171.4 196 51.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 9.6e-41 170.2 98 84.7
HanXRQChr12g0385441 Helianthus annuus HOM05D002231 ORTHO05D006103 2.1e-40 169.1 113 72.6
HanXRQChr06g0174651 Helianthus annuus HOM05D002231 ORTHO05D006103 2.8e-40 168.7 120 68.3
HanXRQChr08g0207851 Helianthus annuus HOM05D002231 ORTHO05D006103 8.1e-40 167.2 121 70.2
ECA233G1565 Erigeron canadensis HOM05D002231 ORTHO05D006103 6.9e-39 164.1 120 68.3
BcaC05g26745 Brassica carinata HOM05D002231 ORTHO05D006103 9.0e-39 163.7 116 69.8
BcaB03g13989 Brassica carinata HOM05D002231 ORTHO05D006103 4.5e-38 161.4 101 75.2
BcaC05g26552 Brassica carinata HOM05D002231 ORTHO05D006103 1.3e-37 159.8 101 74.3
Zm00001eb085510 Zea mays HOM05D002231 ORTHO05D006103 2.2e-37 159.1 122 64.8
MBI11_g05330_MAGBIO Magnolia biondii HOM05D002231 ORTHO05D006103 2.9e-37 158.7 94 84.0
DCAR_007004 Daucus carota HOM05D002231 ORTHO05D006103 6.4e-37 157.5 110 72.7
AagrBONN_evm.TU.Sc2ySwM_368.423 Anthoceros agrestis HOM05D002231 ORTHO05D006103 8.4e-37 157.1 121 66.9
arahy.Tifrunner.gnm1.ann1.RN2E3G Arachis hypogaea HOM05D002231 ORTHO05D006103 9.3e-36 153.7 103 75.7
Duzib248G1458 Durio zibethinus HOM05D002231 ORTHO05D006103 3.5e-35 151.8 120 68.3
arahy.Tifrunner.gnm1.ann1.1IJF7J Arachis hypogaea HOM05D002231 ORTHO05D006103 4.6e-35 151.4 93 78.5
SMO364G0411 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.0e-34 150.2 120 63.3
AUR62005623 Chenopodium quinoa HOM05D002231 ORTHO05D006103 1.3e-34 149.8 120 66.7
SMO246G0027 Selaginella moellendorffii HOM05D002231 ORTHO05D006103 1.3e-34 149.8 119 63.9
Nn4g22308 Nelumbo nucifera HOM05D002231 ORTHO05D006103 7.4e-33 144.1 87 81.6
Pp3c15_19360 Physcomitrium patens HOM05D002231 ORTHO05D006103 3.7e-32 141.7 123 61.0
CBR_g57027 Chara braunii HOM05D002231 ORTHO05D006103 1.1e-31 140.2 120 57.5
Haze_12423 Corylus avellana HOM05D002231 ORTHO05D006103 1.3e-29 133.3 73 87.7
Pp3c9_19480 Physcomitrium patens HOM05D002231 ORTHO05D006103 2.2e-29 132.5 123 56.9
Oeu049136.1 Olea europaea HOM05D002231 ORTHO05D006103 2.9e-29 132.1 96 69.8
Oeu029193.1 Olea europaea HOM05D002231 ORTHO05D006103 4.2e-28 128.3 73 83.6
COL.COLO4_20407 Corchorus olitorius HOM05D002231 ORTHO05D006103 5.5e-28 127.9 73 83.6
SalBow2G1775 Salvia bowleyana HOM05D002231 ORTHO05D006103 7.1e-28 127.5 73 82.2
DCAR_026462 Daucus carota HOM05D002231 ORTHO05D006103 4.6e-27 124.8 73 80.8
Nitab4.5_0000155g0190 Nicotiana tabacum HOM05D002231 ORTHO05D006103 4.6e-27 124.8 73 82.2
ATR0059G025 Amborella trichopoda HOM05D002231 ORTHO05D006103 1.3e-26 123.2 73 82.2
Nitab4.5_0004003g0010 Nicotiana tabacum HOM05D002231 ORTHO05D006103 2.3e-26 122.5 72 81.9
Lsat_1_v5_gn_4_56001 Lactuca sativa HOM05D002231 ORTHO05D006103 2.0e-22 109.4 118 52.5
PRCOL_00004939 Prasinoderma coloniale HOM05D002231 ORTHO05D006103 2.0e-22 109.4 121 47.1
RcHm_v2.0_Chr3g0491761 Rosa chinensis HOM05D002231 ORTHO05D006103 3.6e-19 98.6 62 80.6
MCO02G005 Micromonas commoda HOM05D003605 ORTHO05D004292 7.4e-17 90.9 121 39.7
Cre12.g508300 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 3.1e-15 85.5 88 51.1
Cre02.g074700 Chlamydomonas reinhardtii HOM05D002231 ORTHO05D006103 2.6e-14 82.4 122 39.3
CDE05G2241 Ceratophyllum demersum HOM05D001859 ORTHO05D001836 9.7e-09 63.9 38 78.9
TAR383G1026 Trochodendron aralioides HOM05D002231 ORTHO05D006103 9.7e-09 63.9 35 85.7
TAR636G2964 Trochodendron aralioides HOM05D002231 ORTHO05D006103 2.8e-08 62.4 38 78.9
C02p58440 Brassica napus HOM05D001393 ORTHO05D032808 4.1e-07 58.5 36 72.2


User provided reference genes

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